Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)
On Sat, Apr 13, 2013 at 09:48:05PM +0200, Anton Gladky wrote: On 04/13/2013 04:18 PM, Dirk Eddelbuettel wrote: So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F, '{print $1}'`; \ do echo -n $p,; apt-cache show $p | grep Maintainer | \ sed -e 's/.*//' -e 's/$//'; done | \ awk -F, '/^r-/ {print $2,$1}' | sort debian-med-packag...@lists.alioth.debian.org r-bioc-cummerbund ... debichem-de...@lists.alioth.debian.org r-cran-readbrukerflexdata i...@maintz.de r-cran-gtable lawre...@debian.org r-cran-pscl root@max:/# Cool, considering the deep freeze... +1 As previous discussion has shown the R change is at least questionable. I personally will not upgrade any R related package in Debian Med or Debian Science before Wheezy is released - I'm fine if anybody else wants to spend time into this, provided the relevant team VCS will be updated. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130415080652.gb19...@an3as.eu
Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)
On Sat, Apr 13, 2013 at 09:18:05AM -0500, Dirk Eddelbuettel wrote: Charles, failing that, shall we coordinate off-list? Re-building in chroot takes about a minute or two each but sadly some of these package appear effectively orphaned (eg gpplot2, single upload 15 months ago -- is that really work done to Debian standards?) Perhaps I misread this, but it seemed you are criticising folks for not working on things which don't impact wheezy? -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130415090947.GA5777@debian
Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)
Le Sat, Apr 13, 2013 at 09:18:05AM -0500, Dirk Eddelbuettel a écrit : I would be really terrific if the the debian-med, debian-science, debichem teams could update some of these packages. Charles, failing that, shall we coordinate off-list? Re-building in chroot takes about a minute or two each but sadly some of these package appear effectively orphaned (eg gpplot2, single upload 15 months ago -- is that really work done to Debian standards?) Hi Dirk and everybody, my pace is aproximately one package per day, partly because instead of rebuilding I take the opportunity to upgrade when new upstream releases are available (and as you noted, a lot accumulated during the Freeze). Everybody's help is welcome, especially for the trivial rebuilds. We have our packages managed in Subversion and Git repository, but if this is bothering, I think that we can cut corners with a simple NMU with no changes, that will be a branch in the version tree. Also, for the architecture-dependant packages, we can request binary NMUs, although I have been reluctant to do so in order to not disturb the Release team. For ggplot2, we are working on the update (#700862), but it needs the introduction of new packages (r-cran-gtable, accepted this week, and r-cran-scales, to be uploaded). For the short term, I just uploaded a NMU to rebuild the package. Have a nice Sunday, -- Charles -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130414083639.gc13...@falafel.plessy.net
Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)
So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F, '{print $1}'`; \ do echo -n $p,; apt-cache show $p | grep Maintainer | \ sed -e 's/.*//' -e 's/$//'; done | \ awk -F, '/^r-/ {print $2,$1}' | sort debian-med-packag...@lists.alioth.debian.org r-bioc-cummerbund debian-med-packag...@lists.alioth.debian.org r-bioc-edger debian-med-packag...@lists.alioth.debian.org r-bioc-hilbertvis debian-med-packag...@lists.alioth.debian.org r-bioc-limma debian-med-packag...@lists.alioth.debian.org r-bioc-qvalue debian-med-packag...@lists.alioth.debian.org r-cran-combinat debian-med-packag...@lists.alioth.debian.org r-cran-deal debian-med-packag...@lists.alioth.debian.org r-cran-diagnosismed debian-med-packag...@lists.alioth.debian.org r-cran-dichromat debian-med-packag...@lists.alioth.debian.org r-cran-epi debian-med-packag...@lists.alioth.debian.org r-cran-epibasix debian-med-packag...@lists.alioth.debian.org r-cran-epicalc debian-med-packag...@lists.alioth.debian.org r-cran-epir debian-med-packag...@lists.alioth.debian.org r-cran-epitools debian-med-packag...@lists.alioth.debian.org r-cran-evd debian-med-packag...@lists.alioth.debian.org r-cran-genabel debian-med-packag...@lists.alioth.debian.org r-cran-genetics debian-med-packag...@lists.alioth.debian.org r-cran-ggplot2 debian-med-packag...@lists.alioth.debian.org r-cran-haplo.stats debian-med-packag...@lists.alioth.debian.org r-cran-labeling debian-med-packag...@lists.alioth.debian.org r-cran-psy debian-med-packag...@lists.alioth.debian.org r-cran-pvclust debian-med-packag...@lists.alioth.debian.org r-cran-randomforest debian-med-packag...@lists.alioth.debian.org r-cran-reshape2 debian-med-packag...@lists.alioth.debian.org r-cran-rocr debian-med-packag...@lists.alioth.debian.org r-cran-stringr debian-med-packag...@lists.alioth.debian.org r-other-mott-happy debian-science-maintain...@lists.alioth.debian.org r-cran-amore debian-science-maintain...@lists.alioth.debian.org r-cran-msm debian-science-maintain...@lists.alioth.debian.org r-cran-plotrix debian-science-maintain...@lists.alioth.debian.org r-cran-sp debian-science-maintain...@lists.alioth.debian.org r-cran-spc debian-science-maintain...@lists.alioth.debian.org r-cran-teachingdemos debian-science-maintain...@lists.alioth.debian.org r-cran-vcd debian-science-maintain...@lists.alioth.debian.org r-cran-xtable debichem-de...@lists.alioth.debian.org r-cran-maldiquant debichem-de...@lists.alioth.debian.org r-cran-readbrukerflexdata i...@maintz.de r-cran-gtable lawre...@debian.org r-cran-pscl root@max:/# I would be really terrific if the the debian-med, debian-science, debichem teams could update some of these packages. Charles, failing that, shall we coordinate off-list? Re-building in chroot takes about a minute or two each but sadly some of these package appear effectively orphaned (eg gpplot2, single upload 15 months ago -- is that really work done to Debian standards?) Dirk [1] I filtered out things like littler (works fine with R 3.0.0), python-nwsserver (uses pipes, is fine too) and postgresql-9.1-plr which I suspect is fine just like littler is. -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20841.26909.357993.896...@max.nulle.part
Re: Further Update on R 3.0.0 migration (Was: R 3.0.0 and required rebuilds of all reverse Depends: of R)
On 04/13/2013 04:18 PM, Dirk Eddelbuettel wrote: So here is where we stand, with little improvement from last week: [1] root@max:/# for p in `apt-cache showpkg r-base-core | \ grep r-base-core 2 | sort | awk -F, '{print $1}'`; \ do echo -n $p,; apt-cache show $p | grep Maintainer | \ sed -e 's/.*//' -e 's/$//'; done | \ awk -F, '/^r-/ {print $2,$1}' | sort debian-med-packag...@lists.alioth.debian.org r-bioc-cummerbund debian-med-packag...@lists.alioth.debian.org r-bioc-edger debian-med-packag...@lists.alioth.debian.org r-bioc-hilbertvis debian-med-packag...@lists.alioth.debian.org r-bioc-limma debian-med-packag...@lists.alioth.debian.org r-bioc-qvalue debian-med-packag...@lists.alioth.debian.org r-cran-combinat debian-med-packag...@lists.alioth.debian.org r-cran-deal debian-med-packag...@lists.alioth.debian.org r-cran-diagnosismed debian-med-packag...@lists.alioth.debian.org r-cran-dichromat debian-med-packag...@lists.alioth.debian.org r-cran-epi debian-med-packag...@lists.alioth.debian.org r-cran-epibasix debian-med-packag...@lists.alioth.debian.org r-cran-epicalc debian-med-packag...@lists.alioth.debian.org r-cran-epir debian-med-packag...@lists.alioth.debian.org r-cran-epitools debian-med-packag...@lists.alioth.debian.org r-cran-evd debian-med-packag...@lists.alioth.debian.org r-cran-genabel debian-med-packag...@lists.alioth.debian.org r-cran-genetics debian-med-packag...@lists.alioth.debian.org r-cran-ggplot2 debian-med-packag...@lists.alioth.debian.org r-cran-haplo.stats debian-med-packag...@lists.alioth.debian.org r-cran-labeling debian-med-packag...@lists.alioth.debian.org r-cran-psy debian-med-packag...@lists.alioth.debian.org r-cran-pvclust debian-med-packag...@lists.alioth.debian.org r-cran-randomforest debian-med-packag...@lists.alioth.debian.org r-cran-reshape2 debian-med-packag...@lists.alioth.debian.org r-cran-rocr debian-med-packag...@lists.alioth.debian.org r-cran-stringr debian-med-packag...@lists.alioth.debian.org r-other-mott-happy debian-science-maintain...@lists.alioth.debian.org r-cran-amore debian-science-maintain...@lists.alioth.debian.org r-cran-msm debian-science-maintain...@lists.alioth.debian.org r-cran-plotrix debian-science-maintain...@lists.alioth.debian.org r-cran-sp debian-science-maintain...@lists.alioth.debian.org r-cran-spc debian-science-maintain...@lists.alioth.debian.org r-cran-teachingdemos debian-science-maintain...@lists.alioth.debian.org r-cran-vcd debian-science-maintain...@lists.alioth.debian.org r-cran-xtable debichem-de...@lists.alioth.debian.org r-cran-maldiquant debichem-de...@lists.alioth.debian.org r-cran-readbrukerflexdata i...@maintz.de r-cran-gtable lawre...@debian.org r-cran-pscl root@max:/# Cool, considering the deep freeze... Anton signature.asc Description: OpenPGP digital signature