Re: Sponsoring request: ITK-4.10 (addendum)

2016-07-14 Thread Steve M. Robbins
On Thursday, July 14, 2016 8:04:28 AM CDT Andreas Tille wrote: > On Wed, Jul 13, 2016 at 10:43:27PM +0200, Gert Wollny wrote: > > > I admit I either need to find a powerful box *and* a connection with > > > better bandwidth for upload than I usually have. I have put Steve > > > who did previous

Re: castxml sponsoring or upload rights and insighttoolkit-4.9

2016-02-03 Thread Steve M. Robbins
On February 3, 2016 12:55:59 PM Andreas Tille wrote: > On Wed, Feb 03, 2016 at 12:49:54PM +0100, Gert Wollny wrote: > > > I can't upload itk until I'm arrived in Kpenhagen (hope we have a > > > perfect connection there). IT would be cool if somebody else would be > > > faster than me with

Re: castxml sponsoring or upload rights and insighttoolkit-4.9

2016-02-03 Thread Steve M. Robbins
On February 3, 2016 03:35:06 PM Gert Wollny wrote: > On Wed, 2016-02-03 at 08:19 -0600, Steve M. Robbins wrote: > > I'd be happy to do the build & upload. > > Gert: Is the repo ready to go NOW? > > Yes, I tested the build last night on amd64. Great! I'm building now.

Re: Insight toolkit dependency (2 questions)

2015-11-18 Thread Steve M. Robbins
On November 18, 2015 01:59:32 PM Gregory Sharp wrote: > Hi, > > == Question 1 == > > I'm at a loss to figure out why plastimatch does not build on i386. [ ... ] > When I build on i386 with pbuilder, everything seems to build fine. My recollection is that the dependency resolver used by

Re: Please update from ITK v3 to v4 [Re: RM: insighttoolkit -- ROM; Obsoleted by insighttoolkit4]

2015-09-12 Thread Steve M. Robbins
On August 12, 2015 10:01:36 PM Steve M. Robbins wrote: > Hi, > > Previously on debian-med, I proposed that ITK v3 be dropped from the archive > [1]. The only respondent agreed with that. So I filed for removal [2] and > received notice that several packages still depend

Re: Alert about several medical imaging packages (Was: insighttoolkit4 is marked for autoremoval from testing)

2015-08-21 Thread Steve M. Robbins
Update on ITKv4: I have finally managed a complete build of ITK 4.8.0. Because it participates in the libstdc++ transition [1], I am uploading to experimental for staging. [1] https://release.debian.org/transitions/html/libstdc++6.html -Steve signature.asc Description: This is a digitally

Re: Please update from ITK v3 to v4 [Re: RM: insighttoolkit -- ROM; Obsoleted by insighttoolkit4]

2015-08-18 Thread Steve M. Robbins
On August 18, 2015 05:34:09 PM Gregory Sharp wrote: Hi Steve, Is ITK v4 now working on platforms that are not amd64 / i386? Sorry; no, it isn't. Or should the dependencies for other platforms be retained? ITK v3 is going to be removed, so I think the dependency won't help you. -Steve

Re: Perl's rename command will move.

2015-08-18 Thread Steve M. Robbins
)rename in your package follow: INSERT grep results - Any comments on this before I send these out? Is it possible your grep is showing false positives? I checked these two: Steve M. Robbins s...@debian.org gdcm (U) insighttoolkit4 (U) and found no use of rename. I did

Re: Please update from ITK v3 to v4 [Re: RM: insighttoolkit -- ROM; Obsoleted by insighttoolkit4]

2015-08-14 Thread Steve M. Robbins
On August 14, 2015 07:06:30 AM Andreas Tille wrote: On Thu, Aug 13, 2015 at 07:58:07PM -0500, Steve M. Robbins wrote: On August 13, 2015 01:47:37 PM Dmitry Smirnov wrote: On Wednesday 12 August 2015 22:01:36 Steve M. Robbins wrote: Could those package maintainers update to v4, please

Re: Please update from ITK v3 to v4 [Re: RM: insighttoolkit -- ROM; Obsoleted by insighttoolkit4]

2015-08-13 Thread Steve M. Robbins
On August 13, 2015 01:47:37 PM Dmitry Smirnov wrote: On Wednesday 12 August 2015 22:01:36 Steve M. Robbins wrote: Could those package maintainers update to v4, please? First ITK-4 needs to be re-build for GCC-5 transition. Yes, true. There is work in progress on that front [1]. I'm

Please update from ITK v3 to v4 [Re: RM: insighttoolkit -- ROM; Obsoleted by insighttoolkit4]

2015-08-12 Thread Steve M. Robbins
to v4, please? Thanks, -Steve [1] https://lists.debian.org/debian-med/2015/08/msg00010.html [2] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795019 On August 12, 2015 11:54:07 AM you wrote: On Sunday, August 09, 2015 10:48:36 AM Steve M. Robbins wrote: Package: ftp.debian.org Severity

Re: Alert about several medical imaging packages (incl. mummy, activiz)

2015-08-08 Thread Steve M. Robbins
On August 4, 2015 03:00:58 PM Andreas Tille wrote: On Tue, Aug 04, 2015 at 07:25:55AM -0500, Steve M. Robbins wrote: On August 2, 2015 07:13:09 AM Andreas Tille wrote: Gccxml: I have taken your idea of a compatibility wrapper around castxml, implemented the suggestions of Brad King [2

Re: gcc-5 transition of GDCM

2015-08-07 Thread Steve M. Robbins
Hi Sébastien, Great work! On August 6, 2015 04:28:37 PM Sébastien Jodogne wrote: Sorry for the multiple posts, but thanks to Steve's upload of gccxml last evening, I have finally managed to make the transition of the gdcm package to gcc-5. A single patch to the CMake scripts is necessary

Re: gcc-5 transition of GDCM

2015-08-06 Thread Steve M. Robbins
On August 5, 2015 03:29:30 PM Sébastien Jodogne wrote: I will try hard to get the script into VCS tonight and then I will welcome help in testing the builds on dependent packages. Great! Let me know when things are ready. OK. The gccxml package is updated with a wrapper around castxml

Re: gcc-5 transition of GDCM

2015-08-05 Thread Steve M. Robbins
On August 4, 2015 07:19:14 PM Sébastien Jodogne wrote: As a consequence, I would like to know when updated versions of the libgdcm2.4 and libgdcm2-dev packages built with gcc-5 will be available in the repositories. Is this information available somewhere? If you read the Debian

Re: Alert about several medical imaging packages (Was: insighttoolkit4 is marked for autoremoval from testing)

2015-08-04 Thread Steve M. Robbins
On August 2, 2015 07:13:09 AM Andreas Tille wrote: Hi, you might have noticed that we have gathered several gcc-5 related bugs. The situation in several medical imaging packages is specifically hard since it is a longer chain of dependencies and these seem to be specifically hard to solve.

Policy and Best Practices

2015-07-29 Thread Steve M. Robbins
On July 29, 2015 09:40:41 AM Ghislain Vaillant wrote: FYI, I am intending to write a piece on the d-science / d-med policies regarding DEP-14 and its relationship with import-orig and pure Git workflows. Just need to find the time for it. Just like to say: I would find that extremely

Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API

2015-07-24 Thread Steve M. Robbins
On July 24, 2015 06:09:10 PM Julien Lamy wrote: Philip and Steve: thank you for your suggestions. I have written the ITP bug report way too quickly, and the description indeed needs a lot of clarifying. My apologies for this. Would you agree with the following modifications? Suggested text

Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API

2015-07-24 Thread Steve M. Robbins
On July 23, 2015 08:44:04 PM Philip Hands wrote: Julien Lamy l...@unistra.fr writes: * Package name: dcmtkpp Version : 0.2.1 Upstream Author : Julien Lamy l...@unistra.fr * URL : https://github.com/lamyj/dcmtkpp * License : CeCILL-B

Re: Status of ITK 4.8 packaging

2015-07-24 Thread Steve M. Robbins
On July 21, 2015 04:46:40 PM Paul Novotny wrote: On Mon, 2015-07-20 at 11:34 -0500, Steve M. Robbins wrote: 1. Upstream now separates the test data from the source tarball. I would like to keep the tests so I planned to use the multiple orig tarball feature. I believe I've done

Re: Status of ITK 4.8 packaging

2015-07-24 Thread Steve M. Robbins
On July 21, 2015 03:03:55 PM Paul Novotny wrote: So, based on that commit message, and Gert's description of why the patch was added, I think this patch can be removed. As the library has been removed. I am building now to make sure the lintian warning is gone. OK, thanks for tracking down

Re: Status of ITK 4.8 packaging

2015-07-21 Thread Steve M. Robbins
On July 20, 2015 04:09:24 PM Paul Novotny wrote: On Mon, 2015-07-20 at 11:34 -0500, Steve M. Robbins wrote: 2. I disabled patches/0005-make-gdcm-helper-library-static.patch because it did not apply cleanly. I did not spend time investigating how to fix it or whether it is even needed

Status of ITK 4.8 packaging

2015-07-20 Thread Steve M. Robbins
On July 18, 2015 02:12:05 PM Steve M. Robbins wrote: I should also like to mention that I have started packaging the new ITK (4.8.0) using the CastXML. I have gotten ITK to build and will push the changes to alioth sometime this weekend. At this point, I've just done minimal changes to get

Re: Status of castxml [and ITK] packaging?

2015-07-19 Thread Steve M. Robbins
On July 18, 2015 09:53:35 PM Andreas Tille wrote: Hi Steve, On Sat, Jul 18, 2015 at 02:12:05PM -0500, Steve M. Robbins wrote: Just before your email, I got a response saying I had missed the license of some files. I fixed that and re-uploaded it a couple hours ago. So it is in NEW

Re: Status of castxml [and ITK] packaging?

2015-07-18 Thread Steve M. Robbins
Hi Andreas, On Sat, Jul 18, 2015 at 11:00:14AM +0200, Andreas Tille wrote: Hi Steve, as you most probably know several Debian Med packages (and probably others) seem to need castxml since gccxml does not build with gcc-5 and is not maintained any more. Could you be so kind to give a status

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-17 Thread Steve M. Robbins
On Fri, Jul 17, 2015 at 06:33:04PM +0200, Julien Lamy wrote: Le 16/07/2015 20:39, Andreas Tille a écrit : That's OK now. I guess your next commits will be a debian/ dir. Feel free to commit your latest stuff you just did and improve from there. I just pushed the first version of the

Re: Help needed to try to fix activiz.net

2015-07-09 Thread Steve M. Robbins
On July 9, 2015 03:50:58 PM Corentin Desfarges wrote: Thank you ! I'm faced a new problem : activiz is now working with libvtk6 [1], How did you manage that? I looked a couple months ago and the released, free ActiViz only built with VTK 5.8, not even with 5.10 let alone 6. -Steve

Re: ITK help is needed!

2015-06-29 Thread Steve M. Robbins
On May 6, 2015 10:41:08 PM Matt McCormick wrote: Hi Gianfranco, Gert, /«BUILDDIR»/insighttoolkit-3.20.1 +git20120521/Utilities/vxl/vcl/vcl_compiler.h:123:4: error: #error Dunno about this gcc A fix was contributed and merged: http://itk.org/gitweb?p=ITK.git;a=commit;h=7f54e864

Re: camitk vs. mitk vs. slicer?

2015-02-23 Thread Steve M. Robbins
Thanks, Paul, On February 23, 2015 09:05:58 AM Paul Novotny wrote: I have not used mitk or camitk, so I can't answer your question directly. But I have had luck prototyping applications using itk and vtk in python. It gives you a Matlab-y way to try things out in ITK, and visualize in VTK (or

camitk vs. mitk vs. slicer?

2015-02-22 Thread Steve M. Robbins
Hi, I'm about to dive into a small surgical planning project that will use some ITK algorithms (e.g. vesselness) and require visualization. For rapid prototyping the application, what is recommended today? I have used slicer in the past, though not for prototyping, and I've vaguely heard of

Re: preparing insighttookit 4.7

2015-01-27 Thread Steve M. Robbins
On January 27, 2015 06:46:44 PM Gert Wollny wrote: Hi all, I've prepared the upload of insighttoolkit version 4.7 in the svn. Since the library package names changes it needs to be sponsored (Steve ?), and the package should go to experimental. I can do the upload. There is still one

Re: preparing insighttookit 4.7

2015-01-27 Thread Steve M. Robbins
On January 27, 2015 11:59:02 PM Gert Wollny wrote: On Tue, 2015-01-27 at 13:28 -0600, Steve M. Robbins wrote: Hm. I agree that installing the doxygen sources is not terribly useful. Would be nice to actually run doxygen and build the docs. Considering that the ITK build already hits

Re: Status of igstk (should we remove the package?)

2014-08-21 Thread Steve M. Robbins
On August 21, 2014 09:50:56 AM Andreas Tille wrote: Hi, as you might have noticed igstk is RC buggy and also lagging behind upstream (5.2). If nobody has any interest in keeping the package alive I don't use the package and have no intention of maintaining it, I'm afraid. -Steve -- To

Re: Status of uw-prism packaging for Debian

2014-08-10 Thread Steve M. Robbins
Hi, I'm tuning in late, but regarding Ira Kalet's question: 3. Finally, there is still the issue of what the US FDA might say about distribution within the US, We have to worry about more than just the US. Almost every country regulates the marketing of medical devices. as software

Re: insighttoolki4, (was gccxml is uploaded)

2014-07-25 Thread Steve M. Robbins
On July 25, 2014 05:37:01 PM Gert Wollny wrote: Which brings me to #756015: #660547 is closed for some time now, I'd forgotten about that! did you ever try to build with system hdf5? I have basically been documenting the flags within debian/rules and this comment: # system HDF5 (omits

Re: insighttoolkit4

2014-06-05 Thread Steve M. Robbins
On June 5, 2014 07:15:33 PM costamagnagianfra...@yahoo.it wrote: Hi all, is somebody taking care of 746863? http://bugs.debian.org/746863 I am not actively working on it. In truth, I have very limited time available for Debian activities at the moment, so someone else will need to step up.

Re: insighttoolkit4

2014-05-29 Thread Steve M. Robbins
On May 29, 2014 12:26:43 PM Gert Wollny wrote: On Thu, 2014-05-29 at 10:48 +0100, Gianfranco Costamagna wrote: Yes, but wasn't the upload something like do the test, but just print them and don't fail if tests fails? No, never. The tests are there to make sure that the code is properly

Re: insighttoolkit4

2014-05-27 Thread Steve M. Robbins
On May 27, 2014 12:36:14 PM Gert Wollny wrote: Hello Gianfranco, On Tue, 2014-05-27 at 11:17 +0100, Gianfranco Costamagna wrote: do anybody plan to upload insighttoolkit4 in the next few days? I'm confident that Steve is at it, we just had to sort out the proper way to print out the test

Re: insighttoolkit4

2014-05-25 Thread Steve M. Robbins
On May 24, 2014 12:09:44 PM Gert Wollny wrote: Actually I'm not a DD, [...] OK, I'll take care of the upload. About the changes: this is the first time I've seen the .ONESHELL trick so the following may be just showing my ignorance, but the docs [1] state that this special target changes the

Re: insighttoolkit4

2014-05-23 Thread Steve M. Robbins
On May 23, 2014 02:25:52 PM Gert Wollny wrote: Hi Steve, I've uploaded the changes. I test build it in a i386 pbuilder and it ran through. I also added myself to the uploaders list, because it seems I work on this quite regularly, Oh! I didn't realize you were a Debian DD. If you got it

Re: insighttoolkit4

2014-05-22 Thread Steve M. Robbins
On May 22, 2014 09:39:42 PM Gert Wollny wrote: Hopefully tomorrow evening all is tested and I will commit the changes. Then I would then ping you that you can prepare the new upload with these changes in place if this is okay with you. OK, sounds good. Thanks! -Steve signature.asc

Re: itk-4.5 and python

2014-03-30 Thread Steve M. Robbins
On March 27, 2014 10:24:56 AM Steve M. Robbins wrote: On March 27, 2014 12:43:47 AM Steve M. Robbins wrote: On March 26, 2014 12:10:13 PM Gert Wollny wrote: Hi Steve, as expected cowbuilder did run through without problems for the latest upload and i386 + amd64, and the only

Re: itk-4.5 and python

2014-03-27 Thread Steve M. Robbins
On March 27, 2014 12:43:47 AM Steve M. Robbins wrote: On March 26, 2014 12:10:13 PM Gert Wollny wrote: Hi Steve, as expected cowbuilder did run through without problems for the latest upload and i386 + amd64, and the only lintian warning I see is * libinsighttoolkit4-dev: binary

Re: itk-4.5 and python

2014-03-26 Thread Steve M. Robbins
On March 26, 2014 12:10:13 PM Gert Wollny wrote: Hi Steve, as expected cowbuilder did run through without problems for the latest upload and i386 + amd64, and the only lintian warning I see is * libinsighttoolkit4-dev: binary-without-manpage usr/bin/itkTestDriver OK, thanks! I'll run a

Re: itk-4.5 and python

2014-03-17 Thread Steve M. Robbins
On March 12, 2014 11:16:05 PM Steve M. Robbins wrote: On March 12, 2014 04:40:35 PM Gert Wollny wrote: Hello Steve, just wanted to mention that my last revision r16399 built on both amd64 and i386 sid. OK, great! I noticed a discrepancy between control.in and control so I re

Re: itk and big endian arcitectures

2014-03-14 Thread Steve M. Robbins
Hi Paul, Glad to hear you can help! On March 9, 2014 06:25:21 PM Paul Novotny wrote: Ok, so I can help out. Do you think getting nightly builds up and running is a good goal? Or are there better places to focus my efforts on? The two big task categories are: 1. Care for debian package on

Re: itk-4.5 and python

2014-03-12 Thread Steve M. Robbins
On March 12, 2014 04:40:35 PM Gert Wollny wrote: Hello Steve, just wanted to mention that my last revision r16399 built on both amd64 and i386 sid. OK, great! I noticed a discrepancy between control.in and control so I re- generated and checked-in the latter. Running a build now... I've

Re: itk-4.5 and python

2014-03-05 Thread Steve M. Robbins
On March 4, 2014 02:38:51 PM Gert Wollny wrote: Hi, it seems all test pass now and the python package builds. That's fantastic! Thanks for doing this. I've uploaded the current state to a branch: svn.debian.org/svn/debian-med/trunk/packages/insighttoolkit/branches/itk4-en able-python

Re: Debian builds of ITK for non-x84/amd64 architectures

2013-11-06 Thread Steve M. Robbins
Hello Matt, On November 6, 2013 05:43:37 PM Matt McCormick wrote: Jean-Christophe noted this bug [1] at the CTK hackfest, which is blocking CTK for other architectures. Is it possible to get some of these architectures reporting nightly builds [2] to the ITK software quality dashboard [3],

Re: itk and tiff

2013-03-19 Thread Steve M. Robbins
On March 19, 2013 09:48:15 AM Paul Novotny wrote: On Mon, 2013-03-18 at 00:56 -0500, Steve M. Robbins wrote: So I turned on system tiff, added your patch, and updated the build depends. Depending on libtiff5-dev failed due to conflict with libvtk5- dev, so I used libtiff5-alt-dev instead

Re: itk and tiff

2013-03-18 Thread Steve M. Robbins
Hi Paul, Just getting back to some ITK work... On February 13, 2013 08:21:52 AM Paul Novotny wrote: So, long story short, we should use system tiff (-DITK_USE_SYSTEM_TIFF:BOOL=ON) and apply the attached patch. Or, not use system tiff and use the patch in [1]. I vote for using system tiff. I

Re: ITK 4 and Python

2013-01-03 Thread Steve M. Robbins
On January 3, 2013 07:58:50 AM Paul Novotny wrote: On on un-related note, what is your work-flow when working with the debian-svn? I think it's standard usage of svn-buildpackage. See http://svn- bp.alioth.debian.org/ch02.html to get started. ie, is there an easy way to setup the source

Re: ITK 4 and Python

2012-12-27 Thread Steve M. Robbins
On December 24, 2012 11:08:17 AM Paul Novotny wrote: I was thinking of taking a crack at enabling the python wrappings for insighttoolkit4. Correct me if I am wrong, but this was never enabled after the upgrade from insighttoolkit3 to insighttoolkit4? Yes, that is the case. My initial

Re: ITK 4.1 patches for gcc 4.7

2012-06-13 Thread Steve M. Robbins
On Tue, Jun 12, 2012 at 04:18:14PM -0400, Paul Novotny wrote: Ok, I have just built ITK 4.1 successfully with gcc 4.7 on amd64. All my patches are attached here (just to have them in one place). Thanks: impressive work! SpatialObject-Test-Segfaults.patch: Fixes the segfaults, in the spatial

Re: Plans for ITK version 4

2012-06-10 Thread Steve M. Robbins
On Tue, Jun 05, 2012 at 09:33:06PM -0500, Steve M. Robbins wrote: So I just noticed that my nightly build of ITK 4 has been failing ever since Debian switched to gcc 4.7. The previous night was successful. Might be worth switching to gcc-4.6 for the build. Since gcc 4.7's optimizer

Re: FEM debian test failures

2012-06-09 Thread Steve M. Robbins
On Sat, Jun 09, 2012 at 08:57:01AM -0400, Bill Lorensen wrote: We need someone to run the spatial object tests in a debugger to give us a hint. Well, I spent some time looking at itkReadWriteSpatialObjectTest and I've determined a few things. 1. It works when built using gcc 4.6 in Release

Re: FEM debian test failures

2012-06-09 Thread Steve M. Robbins
On Sun, Jun 10, 2012 at 12:03:39AM -0500, Steve M. Robbins wrote: Well, I spent some time looking at itkReadWriteSpatialObjectTest and I've determined a few things. [...] 2. It works when built using gcc 4.7 in RelWithDebInfo mode (flags -O2 -g). [...] 4. It fails when built using gcc 4.7

Re: Plans for ITK version 4

2012-06-05 Thread Steve M. Robbins
On Sun, Jun 03, 2012 at 02:17:52PM -0400, Paul Novotny wrote: On Sun, 2012-06-03 at 00:11 -0500, Steve M. Robbins wrote: On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
Hello, On Sat, Jun 02, 2012 at 02:27:00PM -0400, Paul Novotny wrote: What is the status of ITK version 4? I noticed that Wheezy is going to freeze soon, and was wondering what I could do to help get this into testing. Thank you! More hands for ITK is indeed welcome. Between ITK, Boost, and

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one issue currently filed (#670609), a trivial missing Conflicts

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one issue currently filed (#670609), a trivial missing Conflicts

Re: Plans for ITK version 4

2012-05-19 Thread Steve M. Robbins
On Sat, May 19, 2012 at 10:48:19AM -0400, Jay Berkenbilt wrote: I'm quoting the entire old thread below since it's been a while, but I have a solution now unless the release team rejects it. Yaroslav Halchenko deb...@onerussian.com wrote: there seems to be a new build-depends

Re: Bug#190753: Proposing to appeal to the tech. comittee about language extensions in scripts.

2012-04-28 Thread Steve M. Robbins
On Fri, Apr 27, 2012 at 04:18:45PM -0400, Joey Hess wrote: Charles Plessy wrote: As proposed in 2010 (http://bugs.debian.org/190753#98), I would like to ask the Technical Comittee to reconsider our Policy, and restrict it to cases where the name of a program is an interface

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
On Mon, Mar 19, 2012 at 04:46:42PM -0400, Paul Novotny wrote: On Sun, 2012-03-04 at 13:09 -0600, Steve M. Robbins wrote: Other architectures show a regression in that now the libraries don't even build whereas before they did build. Still others claim a dependency installability problem

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
Hi, To recap: I can build ITK 4.1.0 and run the test suite on Debian/unstable amd64 machine. However, the 32-bit i86 fails on seven FFT tests. Yaroslav provided some output from a Debug run: PlanRigor: FFTW_EXHAUSTIVE (8) ITKFFTTestDriver:

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
On Mon, Apr 23, 2012 at 09:40:28AM -0400, Paul Novotny wrote: SO, in the end, I learned more than I wanted. And the solution is probably to include my patch, changing #if to #ifdef. I agree. It never occurred to me that someone (#cmakedefine) would write #define WORDS_BIGENDIAN rather than

Re: Plans for ITK version 4

2012-03-04 Thread Steve M. Robbins
On Fri, Mar 02, 2012 at 07:56:40PM -0500, Luis Ibanez wrote: We just tagged the Git repository this morning with: v4.1.0 Would you mind trying this one ? Done: 4.1.0 was uploaded yesterday to Debian/experimental. We (ITK developers) will be happy to track any

Re: Plans for ITK version 4

2012-03-02 Thread Steve M. Robbins
On Fri, Mar 02, 2012 at 09:47:50AM -0500, Yaroslav Halchenko wrote: BTW -- just to keep itk4 packaging going forward: tried to build it on sid, seems to build (32bit tools on 64bit kernel) but some tests fail/segfault: is that something known? I discovered the same. I got the packages to

Re: [MoM] Packaging fis-get

2012-01-30 Thread Steve M. Robbins
On Mon, Jan 30, 2012 at 05:02:37PM +0100, Karsten Hilbert wrote: The problem with bootstrapping is that Debian does not allow to use foreign binaries (that is, binaries not buildable on Debian) in order to build packages. [KSB3] So Debian doesn't use gcc? Of course it does and

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Tue, Jan 24, 2012 at 12:18:34PM +0100, Mathieu Malaterre wrote: On Tue, Jan 24, 2012 at 8:21 AM, Andreas Tille andr...@an3as.eu wrote: On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As such, I think it would be a disservice to our users to force an abrupt transition

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4 in 'experimental'. Having coexisting packages is nice to have but will cause probably too much trouble (especially if we build all the language wrappers

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 03:11:18PM +0100, Mathieu Malaterre wrote: Since it's released, I was planning to upload straight to 'unstable'. Do you think there's a need to stage in 'experimental' first? ITK will be build against gdcm. I would prefer to see gdcm transition (#657288) to have

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 01:25:46PM -0500, Dominique Belhachemi wrote: On Sat, Jan 28, 2012 at 4:43 AM, Steve M. Robbins st...@sumost.ca wrote: On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 09:07:34PM +0100, Mathieu Malaterre wrote: Steve, On Sat, Jan 28, 2012 at 7:27 PM, Steve M. Robbins st...@sumost.ca wrote: On Sat, Jan 28, 2012 at 03:11:18PM +0100, Mathieu Malaterre wrote: Since it's released, I was planning to upload straight to 'unstable

Re: Debian Native Packages and README.Status

2012-01-23 Thread Steve M. Robbins
On Mon, Jan 23, 2012 at 07:48:00PM +0100, Thorsten Alteholz wrote: IMHO, the process would be more robust if, instead, the script uses the standard Debian method to describe whether the source package has an upstream tarball + patch, or not. Specifically, the absense of a debian revision in

Plans for ITK version 4

2012-01-23 Thread Steve M. Robbins
Hi, As some of you know ITK, the Insight Toolkit, version 4.0.0 was released last month [1]. This is a major update from the previous version 3.20.1, and upstream deliberately broke the API in certain cases [2]. As such, I think it would be a disservice to our users to force an abrupt

Re: libinsighttoolkit3-java ?

2011-11-22 Thread Steve M. Robbins
On Mon, Nov 21, 2011 at 03:36:57PM +0100, Mathieu Malaterre wrote: Hi all (and Steve); Does anyone knows what happen to libinsighttoolkit3-java ? I will need the wrapitk version of this library for bioimagexd at some point. Did the old libinsighttoolkit3-java package got removed to allow

Re: Ginkgo-CADx segfaults

2011-11-10 Thread Steve M. Robbins
On Thu, Nov 10, 2011 at 10:23:01AM +0100, Sebastian Hilbert wrote: On Thursday, November 10, 2011 10:03:09 AM Steffen Möller wrote: Sorry for saying the obvious here, but if the bug is not Debian-specific, then it should go to ITK upstream. I definitely encourage that patches for upstream

Re: About renaming scripts to remove suffixes.

2011-09-26 Thread Steve M. Robbins
On Mon, Sep 26, 2011 at 07:07:04PM +0900, Charles Plessy wrote: Le Mon, Sep 26, 2011 at 11:31:15AM +0200, Luca Capello a écrit : Given that ncbi-blast+ provides a 'legacy_blast' script without the .pl extension, the ncbi-blast+-legacy package should reflect that. Dear all, I would

Re: Bug#638883: Bug#506992: vtk: diff for NMU version 5.6.1-6.1

2011-08-28 Thread Steve M. Robbins
Hi, As Mathieu says: As said previously, I believe #506992 is starting to block other packages, so it would be nice to make some progress on this. Indeed. So I propose to simply add overrides for both embedded libraries. These libraries have not been a problem for the last 11 years that

Re: Bug#506992: vtk: diff for NMU version 5.6.1-6.1

2011-08-23 Thread Steve M. Robbins
On Tue, Aug 23, 2011 at 08:18:04AM +0200, Mathieu Malaterre wrote: On Tue, Aug 23, 2011 at 2:23 AM, Steve M. Robbins st...@sumost.ca wrote: On Mon, Aug 22, 2011 at 10:37:05PM +0200, Mathieu Malaterre wrote: I am fairly confident with the sqlite patch. I am a lot less confident

Re: Bug#506992: vtk: diff for NMU version 5.6.1-6.1

2011-08-22 Thread Steve M. Robbins
On Mon, Aug 22, 2011 at 10:37:05PM +0200, Mathieu Malaterre wrote: I am fairly confident with the sqlite patch. I am a lot less confident with the ftgl patch. For some reason FTLibrary.h is not installed in ftgl installation but seems to be used by VTK internals. What are the differences

ITK is too big for buildd

2011-08-16 Thread Steve M. Robbins
Thanks, Michael Schutte, for fixing one of the ITK bugs! I have another problem that could really use some help, namely trying to get insighttoolkit built on all architectures. I don't think version 3.20 has ever built successfully on all architectures. The problem seems to be all the wrappers.

Re: rev 6863 (Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6)

2011-05-29 Thread Steve M. Robbins
On Sun, May 29, 2011 at 08:51:45PM +0200, Sebastian Hilbert wrote: Am Sonntag, 29. Mai 2011, 05:27:08 schrieb Steve M. Robbins: OK, I built and uploaded it. Thanks a lot. http://ftp-master.debian.org/new.html When does it usually show up ? In this specific instance, unfortunately

Re: rev 6863 (Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6)

2011-05-28 Thread Steve M. Robbins
On Sat, May 28, 2011 at 05:45:26PM +0200, Andreas Tille wrote: On Sat, May 28, 2011 at 05:29:35PM +0200, Mathieu Malaterre wrote: I tried building Ginkgo-CADx and it looks ok to me now. So I agree with question r6861 :) I can confirm that the package builds in an unstable chroot and is

Ginkgo CADx

2011-03-05 Thread Steve M. Robbins
On Sat, Mar 05, 2011 at 07:07:15PM +0100, Andreas Tille wrote: There are many viewers targeted a the neurology specialists but I have found Ginkgo-CADx to work nicely for non neurological dicom images. It would be cool if somebody would work on packaging ... Intrigued by this thread,

Re: Change InsightToolkit to use Review/Statistics?

2011-01-22 Thread Steve M. Robbins
Hi Paul, Thanks for the patches! I applied them all and am currently building a new version. If all goes well, in a couple of hours, I'll upload to experimental. The only change I did not accept is: * get-orig-source was still deleting the Code/Review directory. This directory is needed

Re: Change InsightToolkit to use Review/Statistics?

2010-12-24 Thread Steve M. Robbins
Novotny wrote: On Sun, 2010-11-07 at 12:21 -0600, Steve M. Robbins wrote: I am in the middle of packaging 3.20 myself for Ubuntu. I can send you the sources when I get it working, if you want. Oh! Is there any reason the Debian and Ubuntu packages couldn't be the same? Rather than

Re: Change InsightToolkit to use Review/Statistics?

2010-12-13 Thread Steve M. Robbins
On Mon, Dec 13, 2010 at 11:16:46AM -0500, Yaroslav Halchenko wrote: Hi Steve, Cool to see you are working on packaging elastix. We were referred to it, and good old mairix lead me right to your email (on 2nd hit, since first one was to recap this exact question of ITK_USE_REVIEW).

Re: Change InsightToolkit to use Review/Statistics?

2010-11-07 Thread Steve M. Robbins
On Sun, Nov 07, 2010 at 11:04:05AM -0500, Paul Novotny wrote: Here are the datatypes I turned on, I also attached my entire CMakeCache.txt.debian file. [...] Thanks! I am in the middle of packaging 3.20 myself for Ubuntu. I can send you the sources when I get it working, if you want.

Re: Change InsightToolkit to use Review/Statistics?

2010-10-27 Thread Steve M. Robbins
On Wed, Oct 27, 2010 at 10:29:50AM -0400, Paul Novotny wrote: On Fri, 2010-10-22 at 20:35 -0500, Steve M. Robbins wrote: On Fri, Oct 22, 2010 at 12:43:03PM -0400, Paul Novotny wrote: Adding Review means you can also add WrapITK. Something I think is a good idea, but others may

Re: Change InsightToolkit to use Review/Statistics?

2010-10-22 Thread Steve M. Robbins
On Fri, Oct 22, 2010 at 12:43:03PM -0400, Paul Novotny wrote: On Sun, 2010-10-17 at 23:04 -0500, Steve M. Robbins wrote: Hi, I'm considering switching to the new refactored Statistics classes in ITK. This is an API-breaking move so I'd like to hear of any concerns before implementing

Change InsightToolkit to use Review/Statistics?

2010-10-17 Thread Steve M. Robbins
Hi, I'm considering switching to the new refactored Statistics classes in ITK. This is an API-breaking move so I'd like to hear of any concerns before implementing this. The change would be done for version 3.20 of InsightToolkit (currently stuck in the NEW queue) and not for version 3.18. So

Bug#599880: ITP: mriconvert -- medical image file conversion utility that converts DICOM files to other formats

2010-10-11 Thread Steve M. Robbins
Package: wnpp Severity: wishlist Owner: Steve M. Robbins s...@debian.org * Package name: mriconvert Version : 2.0 Upstream Author : Jolinda Smith joli...@uoregon.edu * URL : http://lcni.uoregon.edu/~jolinda/MRIConvert/ * License : GPL Programming Lang: C

Bug#598556: ITP: insightapplications -- InsightToolKit (ITK) based medical imaging applications

2010-09-29 Thread Steve M. Robbins
Package: wnpp Severity: wishlist Owner: Steve M. Robbins s...@debian.org * Package name: insightapplications Version : 3.20.0 Upstream Author : The Insight Consortium and Contributors * URL : http://itk.org/ITK/resources/applications.html * License : BSD (http

Seeking machines for nightly builds of ITK

2010-08-03 Thread Steve M. Robbins
Hi, The insighttoolkit package is a large and active code base. They use a system of nightly build/test on a variety of machines [1] to ensure that the code works on all supported platforms. I run a build on my amd64 machine -- configured as the Debian ITK packages -- to expose issues early.

Re: insightoolkit: cmake viral dep and gdcm

2010-06-26 Thread Steve M. Robbins
On Fri, Jun 25, 2010 at 02:42:37PM +0200, Mathieu Malaterre wrote: Hi Steve, While trying to build GoFigure2, I found out that cmake viral dependencies is striking again (*). I see that you fixed 580816, I am wondering if I should re-open this bug or would you rather a new one. If the fix

Re: autotools.mk

2010-04-24 Thread Steve M. Robbins
On Sat, Apr 24, 2010 at 11:14:31AM -0700, Scott Christley wrote: Then when I use the svn-b alias (svn-buildpackage -us -uc -rfakeroot --svn-ignore) the output is this: chmod a+x /home/scottc/Projects/tools/debian-med/trunk/packages/swarm/build-area/libswarm-2.3.0/./configure chmod: cannot

Re: Update on WrapITK and debian

2009-11-23 Thread Steve M. Robbins
On Mon, Nov 23, 2009 at 06:45:06PM +0100, Mathieu Malaterre wrote: Steve, I thought I should give an update. I have been trying for the past weeks to get WrapITK working without Review. I have to admit I never succeeded (see all my attempt commented out in the patch file). I do not say

Re: debian-watch-file-in-native-package

2009-11-08 Thread Steve M. Robbins
Hi Mathieu, On Sun, Nov 08, 2009 at 07:55:23PM +0100, Mathieu Malaterre wrote: On Sat, Nov 7, 2009 at 4:13 PM, David Paleino d.pale...@gmail.com wrote: I suggest you to correctly re-upload your package :) What is wrong with the following steps: tar -xzf *.orig.tar.gz cd

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