Re: Plans for ITK version 4

2012-06-10 Thread Steve M. Robbins
On Tue, Jun 05, 2012 at 09:33:06PM -0500, Steve M. Robbins wrote: So I just noticed that my nightly build of ITK 4 has been failing ever since Debian switched to gcc 4.7. The previous night was successful. Might be worth switching to gcc-4.6 for the build. Since gcc 4.7's optimizer is

Re: Plans for ITK version 4

2012-06-08 Thread Paul Novotny
So I just noticed that my nightly build of ITK 4 has been failing ever since Debian switched to gcc 4.7 [1]. The previous night was successful [2]. Might be worth switching to gcc-4.6 for the build. [1] http://open.cdash.org/buildSummary.php?buildid=2260572 [2]

Re: Plans for ITK version 4

2012-06-06 Thread Paul Novotny
On Tue, 2012-06-05 at 21:33 -0500, Steve M. Robbins wrote: On Sun, Jun 03, 2012 at 02:17:52PM -0400, Paul Novotny wrote: On Sun, 2012-06-03 at 00:11 -0500, Steve M. Robbins wrote: On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M.

Re: Plans for ITK version 4

2012-06-05 Thread Steve M. Robbins
On Sun, Jun 03, 2012 at 02:17:52PM -0400, Paul Novotny wrote: On Sun, 2012-06-03 at 00:11 -0500, Steve M. Robbins wrote: On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the

Re: Plans for ITK version 4

2012-06-03 Thread Luis Ibanez
On Sun, Jun 3, 2012 at 1:11 AM, Steve M. Robbins st...@sumost.ca wrote: Well, as things stand now, ITK 4 no longer builds on AMD64, either, so I was unable to upload. Is there a way I could see online the errors in AMD64 ? I don't have an AMD64 machine, but might be able to help.

Re: Plans for ITK version 4

2012-06-03 Thread Paul Novotny
On Sun, 2012-06-03 at 00:11 -0500, Steve M. Robbins wrote: On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one

Re: Plans for ITK version 4

2012-06-02 Thread Paul Novotny
What is the status of ITK version 4? I noticed that Wheezy is going to freeze soon, and was wondering what I could do to help get this into testing. Or is it too late? Whether it gets into Wheezy or not, I have some time to work on this. Anyone know what the current issues are? -Paul -- To

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
Hello, On Sat, Jun 02, 2012 at 02:27:00PM -0400, Paul Novotny wrote: What is the status of ITK version 4? I noticed that Wheezy is going to freeze soon, and was wondering what I could do to help get this into testing. Thank you! More hands for ITK is indeed welcome. Between ITK, Boost, and

Re: Plans for ITK version 4

2012-06-02 Thread Paul Novotny
On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one issue currently filed (#670609), a trivial missing Conflicts. Can you push the latest changes to the build servers? I noticed

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one issue currently filed (#670609), a trivial missing Conflicts.

Re: Plans for ITK version 4

2012-06-02 Thread Steve M. Robbins
On Sat, Jun 02, 2012 at 06:38:16PM -0400, Paul Novotny wrote: On Sat, 2012-06-02 at 16:06 -0500, Steve M. Robbins wrote: First order of business is to go through the buildd logs and get a list of the issues. There is only one issue currently filed (#670609), a trivial missing Conflicts.

Re: Plans for ITK version 4

2012-05-19 Thread Jay Berkenbilt
I'm quoting the entire old thread below since it's been a while, but I have a solution now unless the release team rejects it. Yaroslav Halchenko deb...@onerussian.com wrote: there seems to be a new build-depends complication: libgeotiff-dev depends on libtiff5-dev, libtiff5-dev

Re: Plans for ITK version 4

2012-05-19 Thread Steve M. Robbins
On Sat, May 19, 2012 at 10:48:19AM -0400, Jay Berkenbilt wrote: I'm quoting the entire old thread below since it's been a while, but I have a solution now unless the release team rejects it. Yaroslav Halchenko deb...@onerussian.com wrote: there seems to be a new build-depends

Re: Plans for ITK version 4

2012-04-24 Thread Luis Ibanez
Steve, Paul, Thanks for tracking this problem. I remember having problems when making this TIFF configuration in ITK. Should we apply your patch upstream as well ? Thanks Luis On Mon, Apr 23, 2012 at 9:06 PM, Steve M. Robbins st...@sumost.ca

Re: Plans for ITK version 4

2012-04-24 Thread Mathieu Malaterre
Luis, On Tue, Apr 24, 2012 at 12:45 PM, Luis Ibanez luis.iba...@kitware.com wrote: I remember having problems when making this TIFF configuration in ITK. Should we apply your patch upstream as well ? Upstream is using libtool by default which will generate #define FOO 1 or /* undef FOO */ so

Re: Plans for ITK version 4

2012-04-24 Thread Luis Ibanez
Mathieu, Thanks for the clarification. I'll take a look at your file: tif_config.h.cmake.in since I'm not sure that we got it right in ITK when configuring the latest update of TIFF... We may take advantage of copying from your configuration above. Thanks

Re: Plans for ITK version 4

2012-04-24 Thread Matt McCormick
Hi all, I have verified the failures linking against the system version of FFTW on an i386 sid virtual machine, but the failures do not occur when building FFTW 3.2.2 or 3.3 as a CMake ExternalProject. Matt On Mon, Apr 23, 2012 at 9:11 AM, Yaroslav Halchenko y...@debian.org wrote: meanwhile I

Re: Plans for ITK version 4

2012-04-24 Thread Yaroslav Halchenko
and for me tests are still running -- I have built in a clean sid + fftw3 (3.3.1-4) from experimental i386 note: build-depends would need to be adjusted to depend on new libfftw3-mt-dev (which depends on libfftw3-dev) if fftw3 would get into sid in such a packaging setup On Tue, 24 Apr 2012,

Re: Plans for ITK version 4

2012-04-24 Thread Yaroslav Halchenko
FWIW -- unfortunately still fails with systemwide fftw3 3.3.1-4 The following tests FAILED: 608 - itkFFTWF_FFTTest (SEGFAULT) 609 - itkFFTWF_RealFFTTest (SEGFAULT) 610 - itkVnlFFTWF_FFTTest (SEGFAULT) 614 - itkVnlFFTWD_FFTTest (SEGFAULT) 615 -

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
On Mon, Mar 19, 2012 at 04:46:42PM -0400, Paul Novotny wrote: On Sun, 2012-03-04 at 13:09 -0600, Steve M. Robbins wrote: Other architectures show a regression in that now the libraries don't even build whereas before they did build. Still others claim a dependency installability problem

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
Hi, To recap: I can build ITK 4.1.0 and run the test suite on Debian/unstable amd64 machine. However, the 32-bit i86 fails on seven FFT tests. Yaroslav provided some output from a Debug run: PlanRigor: FFTW_EXHAUSTIVE (8) ITKFFTTestDriver:

Re: Plans for ITK version 4

2012-04-23 Thread Yaroslav Halchenko
meanwhile I will blindly try to build/test it against fftw3 in experimental -- who knows, may be it is their bug ;) On Mon, 23 Apr 2012, Steve M. Robbins wrote: I just ran ITKFFTTestDriver itkFFTWF_FFTTest through valgrind with the following results. Any ideas of what to look at next are

Re: Plans for ITK version 4

2012-04-23 Thread Paul Novotny
On Mon, 2012-04-23 at 00:50 -0500, Steve M. Robbins wrote: On Mon, Mar 19, 2012 at 04:46:42PM -0400, Paul Novotny wrote: On Sun, 2012-03-04 at 13:09 -0600, Steve M. Robbins wrote: Other architectures show a regression in that now the libraries don't even build whereas before they did

Re: Plans for ITK version 4

2012-04-23 Thread Steve M. Robbins
On Mon, Apr 23, 2012 at 09:40:28AM -0400, Paul Novotny wrote: SO, in the end, I learned more than I wanted. And the solution is probably to include my patch, changing #if to #ifdef. I agree. It never occurred to me that someone (#cmakedefine) would write #define WORDS_BIGENDIAN rather than

Re: Plans for ITK version 4

2012-03-20 Thread Jay Berkenbilt
Yaroslav Halchenko deb...@onerussian.com wrote: there seems to be a new build-depends complication: libgeotiff-dev depends on libtiff5-dev, libtiff5-dev is not (yet) providing libtiff-dev (but conflicting with libtiff4-dev providing it) itk4 and libvtk5-dev depending on

Re: Plans for ITK version 4

2012-03-19 Thread Paul Novotny
On Sun, 2012-03-04 at 13:09 -0600, Steve M. Robbins wrote: Other architectures show a regression in that now the libraries don't even build whereas before they did build. Still others claim a dependency installability problem for minc or gdcm. [1]

Re: Plans for ITK version 4

2012-03-19 Thread Yaroslav Halchenko
there seems to be a new build-depends complication: libgeotiff-dev depends on libtiff5-dev, libtiff5-dev is not (yet) providing libtiff-dev (but conflicting with libtiff4-dev providing it) itk4 and libvtk5-dev depending on libtiff-dev that makes it impossible to satisfy

Re: Plans for ITK version 4

2012-03-05 Thread Yaroslav Halchenko
On i386, seven tests segfault which I can reproduce on my machine in a 32-bit chroot. and those segfaults seems to go back to FFT facilities: As with 4.0.0, it builds and tests OK on my amd64, but has not yet been successful on any other architecture [1] although some builds have not yet

Re: Plans for ITK version 4

2012-03-04 Thread Steve M. Robbins
On Fri, Mar 02, 2012 at 07:56:40PM -0500, Luis Ibanez wrote: We just tagged the Git repository this morning with: v4.1.0 Would you mind trying this one ? Done: 4.1.0 was uploaded yesterday to Debian/experimental. We (ITK developers) will be happy to track any

Re: Plans for ITK version 4

2012-03-02 Thread Yaroslav Halchenko
BTW -- just to keep itk4 packaging going forward: tried to build it on sid, seems to build (32bit tools on 64bit kernel) but some tests fail/segfault: The following tests FAILED: 589 - itkFFTWF_FFTTest (SEGFAULT) 590 - itkFFTWF_RealFFTTest (SEGFAULT) 591 -

Re: Plans for ITK version 4

2012-03-02 Thread Steve M. Robbins
On Fri, Mar 02, 2012 at 09:47:50AM -0500, Yaroslav Halchenko wrote: BTW -- just to keep itk4 packaging going forward: tried to build it on sid, seems to build (32bit tools on 64bit kernel) but some tests fail/segfault: is that something known? I discovered the same. I got the packages to

Re: Plans for ITK version 4

2012-03-02 Thread Luis Ibanez
On Fri, Mar 2, 2012 at 7:39 PM, Steve M. Robbins st...@sumost.ca wrote: On Fri, Mar 02, 2012 at 09:47:50AM -0500, Yaroslav Halchenko wrote: BTW -- just to keep itk4 packaging going forward:  tried to build it on sid, seems to build (32bit tools on 64bit kernel) but some tests fail/segfault:

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Tue, Jan 24, 2012 at 12:18:34PM +0100, Mathieu Malaterre wrote: On Tue, Jan 24, 2012 at 8:21 AM, Andreas Tille andr...@an3as.eu wrote: On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As such, I think it would be a disservice to our users to force an abrupt transition by

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4 in 'experimental'. Having coexisting packages is nice to have but will cause probably too much trouble (especially if we build all the language wrappers

Re: Plans for ITK version 4

2012-01-28 Thread Mathieu Malaterre
On Sat, Jan 28, 2012 at 10:43 AM, Steve M. Robbins st...@sumost.ca wrote: On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4 in 'experimental'. Having coexisting packages is nice to have but will cause probably

Re: Plans for ITK version 4

2012-01-28 Thread Mathieu Malaterre
Luis, On Tue, Jan 24, 2012 at 1:14 PM, Luis Ibanez luis.iba...@kitware.com wrote: On Tue, Jan 24, 2012 at 5:11 AM, Michael Hanke m...@debian.org wrote: On Tue, Jan 24, 2012 at 08:22:27AM +0100, Andreas Tille wrote: On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As

Re: Plans for ITK version 4

2012-01-28 Thread Dominique Belhachemi
On Sat, Jan 28, 2012 at 4:43 AM, Steve M. Robbins st...@sumost.ca wrote: On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4 in 'experimental'. Having coexisting packages is nice to have but will cause probably

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 03:11:18PM +0100, Mathieu Malaterre wrote: Since it's released, I was planning to upload straight to 'unstable'. Do you think there's a need to stage in 'experimental' first? ITK will be build against gdcm. I would prefer to see gdcm transition (#657288) to have

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 01:25:46PM -0500, Dominique Belhachemi wrote: On Sat, Jan 28, 2012 at 4:43 AM, Steve M. Robbins st...@sumost.ca wrote: On Tue, Jan 24, 2012 at 08:38:44AM -0500, Dominique Belhachemi wrote: Steve, Thanks for all the work. It would be good to have ITK4 in

Re: Plans for ITK version 4

2012-01-28 Thread Mathieu Malaterre
Steve, On Sat, Jan 28, 2012 at 7:27 PM, Steve M. Robbins st...@sumost.ca wrote: On Sat, Jan 28, 2012 at 03:11:18PM +0100, Mathieu Malaterre wrote: Since it's released, I was planning to upload straight to 'unstable'. Do you think there's a need to stage in 'experimental' first? ITK will

Re: Plans for ITK version 4

2012-01-28 Thread Steve M. Robbins
On Sat, Jan 28, 2012 at 09:07:34PM +0100, Mathieu Malaterre wrote: Steve, On Sat, Jan 28, 2012 at 7:27 PM, Steve M. Robbins st...@sumost.ca wrote: On Sat, Jan 28, 2012 at 03:11:18PM +0100, Mathieu Malaterre wrote: Since it's released, I was planning to upload straight to 'unstable'.

Re: Plans for ITK version 4

2012-01-24 Thread Karsten Hilbert
On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As such, I think it would be a disservice to our users to force an abrupt transition by uploading ITK 4 and removing ITK 3. Instead, I propose to keep ITK 3.20.1 in Debian and upload a new source package, insighttoolkit4 (or

Re: Plans for ITK version 4

2012-01-24 Thread Karsten Hilbert
On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As some of you know ITK, the Insight Toolkit, version 4.0.0 was released last month [1]. This is a major update from the previous version 3.20.1, and upstream deliberately broke the API in certain cases [2]. ... I am in the

Re: Plans for ITK version 4

2012-01-24 Thread Michael Hanke
On Tue, Jan 24, 2012 at 08:22:27AM +0100, Andreas Tille wrote: On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As maintainer of the upstream project I will be more than happy to help solve any difficulty. Ahhh, ITK *and* GT.M upstream? Is this by chance or is there some

Re: Plans for ITK version 4

2012-01-24 Thread Andreas Tille
On Tue, Jan 24, 2012 at 10:14:01AM +0100, Karsten Hilbert wrote: On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As some of you know ITK, the Insight Toolkit, version 4.0.0 was released last month [1]. This is a major update from the previous version 3.20.1, and

Re: Plans for ITK version 4

2012-01-24 Thread Mathieu Malaterre
On Tue, Jan 24, 2012 at 8:21 AM, Andreas Tille andr...@an3as.eu wrote: On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As such, I think it would be a disservice to our users to force an abrupt transition by uploading ITK 4 and removing ITK 3.  Instead, I propose to keep ITK

Re: Plans for ITK version 4

2012-01-24 Thread Luis Ibanez
On Tue, Jan 24, 2012 at 2:22 AM, Andreas Tille andr...@an3as.eu wrote: On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As maintainer of the upstream project I will be more than happy to help solve any difficulty. Ahhh, ITK *and* GT.M upstream?  Is this by chance or is there some

Re: Plans for ITK version 4

2012-01-24 Thread Andreas Tille
On Tue, Jan 24, 2012 at 06:45:39AM -0500, Luis Ibanez wrote: This is because VistA is very much like a combination of an operating system and a collection of applications. Maybe at some point we can brainstorm on this with you and Bhaskar off-line ? I have no idea whether this

Re: Plans for ITK version 4

2012-01-24 Thread Luis Ibanez
On Tue, Jan 24, 2012 at 5:11 AM, Michael Hanke m...@debian.org wrote: On Tue, Jan 24, 2012 at 08:22:27AM +0100, Andreas Tille wrote: On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As maintainer of the upstream project I will be more than happy to help solve any

Re: Plans for ITK version 4

2012-01-24 Thread Carlos Barrales
GinkgoCADx should work with ITK4, but: * Shoul be patched (itkOrientedImage was vanished). Trivial patch. * Color space interpretation in GinkgoCADx for gdcm2.0 is not completed yet. We have just initiallized tests with debian unstable again. Best regards. On Tue, Jan 24, 2012 at 11:43 AM,

Re: Plans for ITK version 4

2012-01-24 Thread Andreas Tille
Hi Carlos, On Tue, Jan 24, 2012 at 02:10:38PM +0100, Carlos Barrales wrote: GinkgoCADx should work with ITK4, but: * Shoul be patched (itkOrientedImage was vanished). Trivial patch. * Color space interpretation in GinkgoCADx for gdcm2.0 is not completed yet. We have just initiallized tests

Re: Plans for ITK version 4

2012-01-24 Thread Karsten Hilbert
On Tue, Jan 24, 2012 at 02:10:38PM +0100, Carlos Barrales wrote: GinkgoCADx should work with ITK4, but: * Shoul be patched (itkOrientedImage was vanished). Trivial patch. * Color space interpretation in GinkgoCADx for gdcm2.0 is not completed yet. We have just initiallized tests with debian

Re: Plans for ITK version 4

2012-01-24 Thread Bhaskar, K.S
On 01/24/2012 06:45 AM, Luis Ibanez wrote: On Tue, Jan 24, 2012 at 2:22 AM, Andreas Tilleandr...@an3as.eu wrote: On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As maintainer of the upstream project I will be more than happy to help solve any difficulty. Ahhh, ITK *and* GT.M

Re: Plans for ITK version 4

2012-01-24 Thread Andreas Tille
On Tue, Jan 24, 2012 at 10:06:03AM -0500, Bhaskar, K.S wrote: Maybe at some point we can brainstorm on this with you and Bhaskar off-line ? [KSB] Actually, we should use the list as much as possible so that the discussion is captured and archived in a searchable format. Could not have said

Re: Plans for ITK version 4

2012-01-24 Thread Bhaskar, K.S
On 01/24/2012 11:08 AM, Andreas Tille wrote: On Tue, Jan 24, 2012 at 10:06:03AM -0500, Bhaskar, K.S wrote: Maybe at some point we can brainstorm on this with you and Bhaskar off-line ? [KSB] Actually, we should use the list as much as possible so that the discussion is captured and archived

Re: Plans for ITK version 4

2012-01-24 Thread Luis Ibanez
On Tue, Jan 24, 2012 at 11:14 AM, Bhaskar, K.S ks.bhas...@fisglobal.comwrote: On 01/24/2012 11:08 AM, Andreas Tille wrote: On Tue, Jan 24, 2012 at 10:06:03AM -0500, Bhaskar, K.S wrote: Maybe at some point we can brainstorm on this with you and Bhaskar off-line ? [KSB] Actually, we

Plans for ITK version 4

2012-01-23 Thread Steve M. Robbins
Hi, As some of you know ITK, the Insight Toolkit, version 4.0.0 was released last month [1]. This is a major update from the previous version 3.20.1, and upstream deliberately broke the API in certain cases [2]. As such, I think it would be a disservice to our users to force an abrupt

Re: Plans for ITK version 4

2012-01-23 Thread Luis Ibanez
Steve, This is great ! Thanks for your efforts on packaging ITK. On Mon, Jan 23, 2012 at 10:53 PM, Steve M. Robbins st...@sumost.ca wrote: Hi, As some of you know ITK, the Insight Toolkit, version 4.0.0 was released last month [1].  This is a major update from the previous version 3.20.1,

Re: Plans for ITK version 4

2012-01-23 Thread Andreas Tille
On Mon, Jan 23, 2012 at 09:53:16PM -0600, Steve M. Robbins wrote: As such, I think it would be a disservice to our users to force an abrupt transition by uploading ITK 4 and removing ITK 3. Instead, I propose to keep ITK 3.20.1 in Debian and upload a new source package, insighttoolkit4 (or

Re: Plans for ITK version 4

2012-01-23 Thread Andreas Tille
On Mon, Jan 23, 2012 at 11:10:50PM -0500, Luis Ibanez wrote: As maintainer of the upstream project I will be more than happy to help solve any difficulty. Ahhh, ITK *and* GT.M upstream? Is this by chance or is there some connection? Kind regards Andreas. -- http://fam-tille.de