[med-svn] [mothur-lookup-files] 02/02: Initial packaging. These are the missing .pat files that used to be in the main Mothur source. See get-orig-source.

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[med-svn] [mothur-lookup-files] branch master created (now 0c4a148)

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[med-svn] [mothur-lookup-files] branch upstream created (now 987ba21)

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[med-svn] [mothur-lookup-files] 01/01: pristine-tar data for mothur-lookup-files_1.orig.tar.xz

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[med-svn] [mothur-lookup-files] branch pristine-tar created (now 17c8cf9)

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[med-svn] [mothur-lookup-files] 01/02: Imported Upstream version 1

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[med-svn] r19985 - trunk/packages/libsis-jhdf5-java/trunk/debian

Author: tbooth-guest Date: 2015-08-21 11:26:02 + (Fri, 21 Aug 2015) New Revision: 19985 Removed: trunk/packages/libsis-jhdf5-java/trunk/debian/build_native/ Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/control

[med-svn] r19986 - trunk/packages/libsis-jhdf5-java/trunk/debian

Author: tbooth-guest Date: 2015-08-21 11:28:38 + (Fri, 21 Aug 2015) New Revision: 19986 Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/rules Log: Run tests under LC_ALL=C Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/rules

[med-svn] r19987 - trunk/packages/libsis-jhdf5-java/trunk/debian

Author: tbooth-guest Date: 2015-08-21 12:36:47 + (Fri, 21 Aug 2015) New Revision: 19987 Added: trunk/packages/libsis-jhdf5-java/trunk/debian/get-orig-source Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/rules Log: Add get-orig-source based on the one Olivier put into sis-base

[med-svn] r19969 - in trunk/packages/libsis-base-java/trunk/debian: . patches

Author: tbooth-guest Date: 2015-08-17 12:13:53 + (Mon, 17 Aug 2015) New Revision: 19969 Removed: trunk/packages/libsis-base-java/trunk/debian/libsis-base.install Modified: trunk/packages/libsis-base-java/trunk/debian/control

[med-svn] r19970 - in trunk/packages/libsis-jhdf5-java/trunk/debian: . patches

Author: tbooth-guest Date: 2015-08-17 16:46:45 + (Mon, 17 Aug 2015) New Revision: 19970 Added: trunk/packages/libsis-jhdf5-java/trunk/debian/libsis-jhdf5-jni.install trunk/packages/libsis-jhdf5-java/trunk/debian/patches/load_native_debian.patch Removed:

[med-svn] r19936 - in trunk/packages/libsis-jhdf5-java/trunk/debian: . patches test

Author: tbooth-guest Date: 2015-08-14 14:44:34 + (Fri, 14 Aug 2015) New Revision: 19936 Added: trunk/packages/libsis-jhdf5-java/trunk/debian/patches/rename_jni_library.patch Removed: trunk/packages/libsis-jhdf5-java/trunk/debian/i_hate_java.perl

[med-svn] r19937 - trunk/packages/libsis-jhdf5-java/trunk/debian

Author: tbooth-guest Date: 2015-08-14 16:14:47 + (Fri, 14 Aug 2015) New Revision: 19937 Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/control trunk/packages/libsis-jhdf5-java/trunk/debian/rules Log: The junit tests are now invoked. For they don't all pass but we are close!

[med-svn] r19938 - trunk/packages/libsis-jhdf5-java/trunk/debian

Author: tbooth-guest Date: 2015-08-14 16:15:31 + (Fri, 14 Aug 2015) New Revision: 19938 Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/control Log: Set arch=any as there is now compiled code. Modified: trunk/packages/libsis-jhdf5-java/trunk/debian/control

[med-svn] r19931 - in trunk/packages: . libsis-base-java libsis-base-java/trunk libsis-jhdf5-java libsis-jhdf5-java/trunk

Author: tbooth-guest Date: 2015-08-13 09:17:23 + (Thu, 13 Aug 2015) New Revision: 19931 Added: trunk/packages/libsis-base-java/ trunk/packages/libsis-base-java/trunk/ trunk/packages/libsis-base-java/trunk/debian/ trunk/packages/libsis-jhdf5-java/

[med-svn] r19933 - in trunk/packages/libsis-jhdf5-java/trunk/debian: . patches source test

Author: tbooth-guest Date: 2015-08-13 09:24:15 + (Thu, 13 Aug 2015) New Revision: 19933 Added: trunk/packages/libsis-jhdf5-java/trunk/debian/README.source trunk/packages/libsis-jhdf5-java/trunk/debian/changelog trunk/packages/libsis-jhdf5-java/trunk/debian/compat

[med-svn] r19932 - in trunk/packages/libsis-base-java/trunk/debian: . patches source

Author: tbooth-guest Date: 2015-08-13 09:18:51 + (Thu, 13 Aug 2015) New Revision: 19932 Added: trunk/packages/libsis-base-java/trunk/debian/README.Debian trunk/packages/libsis-base-java/trunk/debian/changelog trunk/packages/libsis-base-java/trunk/debian/compat

[med-svn] r19784 - in trunk/packages/qiime/trunk/debian: . scripts

Author: tbooth-guest Date: 2015-07-30 13:52:31 + (Thu, 30 Jul 2015) New Revision: 19784 Added: trunk/packages/qiime/trunk/debian/qiime.1.ronn trunk/packages/qiime/trunk/debian/qiime.manpages trunk/packages/qiime/trunk/debian/qiime_config

[med-svn] r19792 - in trunk/packages/python-burrito-fillings/trunk/debian: . patches source

Author: tbooth-guest Date: 2015-07-30 15:51:10 + (Thu, 30 Jul 2015) New Revision: 19792 Added: trunk/packages/python-burrito-fillings/trunk/debian/changelog trunk/packages/python-burrito-fillings/trunk/debian/compat trunk/packages/python-burrito-fillings/trunk/debian/control

[med-svn] r19791 - in trunk/packages: . python-burrito-fillings python-burrito-fillings/trunk

Author: tbooth-guest Date: 2015-07-30 15:49:06 + (Thu, 30 Jul 2015) New Revision: 19791 Added: trunk/packages/python-burrito-fillings/ trunk/packages/python-burrito-fillings/trunk/ trunk/packages/python-burrito-fillings/trunk/debian/ Log: Checkin for the awkward Burrito-Fillings.

[med-svn] r19793 - trunk/packages/qiime/trunk/debian

Author: tbooth-guest Date: 2015-07-30 15:55:19 + (Thu, 30 Jul 2015) New Revision: 19793 Modified: trunk/packages/qiime/trunk/debian/changelog trunk/packages/qiime/trunk/debian/control trunk/packages/qiime/trunk/debian/qiime-doc.install Log: This now builds and passes all my tests on

[med-svn] r19758 - in trunk/packages: . python-future python-future/trunk

Author: tbooth-guest Date: 2015-07-29 14:19:20 + (Wed, 29 Jul 2015) New Revision: 19758 Added: trunk/packages/python-future/ trunk/packages/python-future/trunk/ trunk/packages/python-future/trunk/debian/ Log: Uploading python-future. See e-mail to Andreas on the list.

[med-svn] r19759 - in trunk/packages/python-future/trunk/debian: . patches source

Author: tbooth-guest Date: 2015-07-29 14:20:48 + (Wed, 29 Jul 2015) New Revision: 19759 Added: trunk/packages/python-future/trunk/debian/changelog trunk/packages/python-future/trunk/debian/compat trunk/packages/python-future/trunk/debian/control

[med-svn] r19359 - in packages/sickle/trunk/debian: . patches source

Author: tbooth-guest Date: 2015-06-23 16:40:40 + (Tue, 23 Jun 2015) New Revision: 19359 Added: packages/sickle/trunk/debian/changelog packages/sickle/trunk/debian/compat packages/sickle/trunk/debian/control packages/sickle/trunk/debian/copyright

[med-svn] r19358 - / packages packages/sickle packages/sickle/trunk

Author: tbooth-guest Date: 2015-06-23 16:39:24 + (Tue, 23 Jun 2015) New Revision: 19358 Added: packages/ packages/sickle/ packages/sickle/trunk/ packages/sickle/trunk/debian/ Log: Committing Sickle packaging ___ debian-med-commit

[med-svn] [libcolt-free-java] 01/01: Confirmed that this DFSG version is fine for Acacia denoiser, which depends on it via libdsol1-java. Some small changes. Please see accompanying comments in the ru

This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository libcolt-free-java. commit 520862cd28437dcbdb0d46baaef4500b87582840 Author: Tim Booth tbo...@ceh.ac.uk Date: Thu Apr 9 16:21:59 2015 +0100 Confirmed that this DFSG

[med-svn] [libcolt-free-java] branch master updated (a4e18c5 - 520862c)

This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch master in repository libcolt-free-java. from a4e18c5 Fix copyright according to ftpmaster request new 520862c Confirmed that this DFSG version is fine for Acacia

[med-svn] r19036 - trunk/packages/acacia/trunk/debian

Author: tbooth-guest Date: 2015-04-09 15:51:02 + (Thu, 09 Apr 2015) New Revision: 19036 Modified: trunk/packages/acacia/trunk/debian/changelog trunk/packages/acacia/trunk/debian/control trunk/packages/acacia/trunk/debian/watch Log: Confirmed to work with libcolt-free-java Modified:

[med-svn] r18862 - trunk/packages/mafft/trunk/debian

Author: tbooth-guest Date: 2015-02-26 14:51:38 + (Thu, 26 Feb 2015) New Revision: 18862 Modified: trunk/packages/mafft/trunk/debian/changelog trunk/packages/mafft/trunk/debian/links trunk/packages/mafft/trunk/debian/rules Log: The latest version of MAFFT leaves an empty file in the

[med-svn] r18810 - in trunk/packages: . seqprep seqprep/trunk

Author: tbooth-guest Date: 2015-02-20 11:43:16 + (Fri, 20 Feb 2015) New Revision: 18810 Added: trunk/packages/seqprep/ trunk/packages/seqprep/trunk/ trunk/packages/seqprep/trunk/debian/ Log: Adding SeqPrep, which is yet another QIIME 1.9 dependency.

[med-svn] r18811 - in trunk/packages/seqprep/trunk/debian: . patches source

Author: tbooth-guest Date: 2015-02-20 11:44:24 + (Fri, 20 Feb 2015) New Revision: 18811 Added: trunk/packages/seqprep/trunk/debian/changelog trunk/packages/seqprep/trunk/debian/compat trunk/packages/seqprep/trunk/debian/control trunk/packages/seqprep/trunk/debian/copyright

[med-svn] r18812 - trunk/packages/rdp-classifier/trunk/debian

Author: tbooth-guest Date: 2015-02-20 11:46:58 + (Fri, 20 Feb 2015) New Revision: 18812 Modified: trunk/packages/rdp-classifier/trunk/debian/changelog trunk/packages/rdp-classifier/trunk/debian/control Log: Trivial update for new version Note that get-orig-source is totally hosed and I

[med-svn] r18813 - trunk/packages/seqprep/trunk/debian

Author: tbooth-guest Date: 2015-02-20 12:17:46 + (Fri, 20 Feb 2015) New Revision: 18813 Modified: trunk/packages/seqprep/trunk/debian/changelog trunk/packages/seqprep/trunk/debian/control Log: Add zlib dep Modified: trunk/packages/seqprep/trunk/debian/changelog

[med-svn] r18795 - in trunk/packages/stacks/trunk/debian: . apache2-conf bin patches sbin source

Author: tbooth-guest Date: 2015-02-19 10:11:08 + (Thu, 19 Feb 2015) New Revision: 18795 Added: trunk/packages/stacks/trunk/debian/README.Debian trunk/packages/stacks/trunk/debian/apache2-conf/ trunk/packages/stacks/trunk/debian/apache2-conf/stacks-web.conf

[med-svn] r18794 - in trunk/packages: . stacks stacks/trunk

Author: tbooth-guest Date: 2015-02-19 10:03:57 + (Thu, 19 Feb 2015) New Revision: 18794 Added: trunk/packages/stacks/ trunk/packages/stacks/trunk/ trunk/packages/stacks/trunk/debian/ Log: Adding my packaging work on Stacks for Bio-Linux. This is a fairly complex one due to the

[med-svn] r18800 - trunk/packages/stacks/trunk/debian

Author: tbooth-guest Date: 2015-02-19 17:03:04 + (Thu, 19 Feb 2015) New Revision: 18800 Modified: trunk/packages/stacks/trunk/debian/changelog trunk/packages/stacks/trunk/debian/control trunk/packages/stacks/trunk/debian/copyright Log: Fix cut-and-paste error in control Improve

[med-svn] [jaligner] 01/01: pristine-tar data for jaligner_1.0.orig.tar.gz

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[med-svn] [jaligner] branch master created (now fc41bfe)

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[med-svn] [jaligner] branch pristine-tar created (now f1f2199)

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[med-svn] [jaligner] annotated tag upstream/1.0 created (now 0127bbd)

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[med-svn] [jaligner] branch upstream created (now fc41bfe)

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[med-svn] [jaligner] branch master updated (3c17c91 - 1487205)

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[med-svn] [jaligner] 02/02: Add a manpage for our little wrapper script

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[med-svn] [jaligner] 01/01: initial debianization

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[med-svn] [jaligner] branch master updated (fc41bfe - 3c17c91)

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[med-svn] [khmer] branch master updated (912a085 - 9c7a7c2)

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[med-svn] [khmer] 01/02: New manpage added for the khmer wrapper script

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[med-svn] [khmer] 02/02: Kill a Lintian warning

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[med-svn] [sphinxcontrib-autoprogram] branch master created (now 04a93a6)

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[med-svn] [khmer] 01/01: Better cleanup

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[med-svn] [khmer] branch master updated (8515226 - 91045eb)

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[med-svn] [sphinxcontrib-autoprogram] 01/01: Imported Upstream version 0.1.1

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[med-svn] [sphinxcontrib-autoprogram] 02/04: Added a patch and suppressed a Lintian warning

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[med-svn] [sphinxcontrib-autoprogram] branch master updated (04a93a6 - 1795de2)

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[med-svn] [sphinxcontrib-autoprogram] 01/04: Add initial Debian dir

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[med-svn] [sphinxcontrib-autoprogram] 04/04: changelog

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[med-svn] [sphinxcontrib-autoprogram] 03/04: ...

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[med-svn] [sphinxcontrib-autoprogram] branch upstream created (now 04a93a6)

This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch upstream in repository sphinxcontrib-autoprogram. at 04a93a6 Imported Upstream version 0.1.1 No new revisions were added by this update. -- Alioth's

[med-svn] [sphinxcontrib-autoprogram] branch pristine-tar created (now d073306)

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[med-svn] [sphinxcontrib-autoprogram] 01/01: pristine-tar data for sphinxcontrib-autoprogram_0.1.1.orig.tar.gz

This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch pristine-tar in repository sphinxcontrib-autoprogram. commit d073306b601bc1cfad6323eca7bf230e895ad346 Author: Tim Booth tbo...@ceh.ac.uk Date: Sat Jan 31 15:41:47 2015 +

[med-svn] r18637 - in trunk/packages: . khmer khmer/trunk

Author: tbooth-guest Date: 2015-01-30 17:33:34 + (Fri, 30 Jan 2015) New Revision: 18637 Added: trunk/packages/khmer/ trunk/packages/khmer/trunk/ trunk/packages/khmer/trunk/debian/ Log: First shot at KHMER commit ___ debian-med-commit

[med-svn] r18638 - in trunk/packages/khmer/trunk/debian: . bin patches source upstream

Author: tbooth-guest Date: 2015-01-30 17:35:22 + (Fri, 30 Jan 2015) New Revision: 18638 Added: trunk/packages/khmer/trunk/debian/bin/ trunk/packages/khmer/trunk/debian/bin/khmer trunk/packages/khmer/trunk/debian/changelog trunk/packages/khmer/trunk/debian/compat

[med-svn] [khmer] 01/02: Add a patch and supply my wrapper script.

This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository khmer. commit 859a27cd0c16ec8c6d6d75053007c9f5d07283e1 Author: Tim Booth tbo...@ceh.ac.uk Date: Fri Jan 30 21:59:25 2015 + Add a patch and supply my wrapper

[med-svn] [khmer] 02/02: Add list of docs

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[med-svn] [khmer] branch master updated (c6b44a0 - 68fd654)

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[med-svn] r18579 - in trunk/packages/rdp-classifier/trunk/debian: . scripts

Author: tbooth-guest Date: 2015-01-19 13:29:28 + (Mon, 19 Jan 2015) New Revision: 18579 Added: trunk/packages/rdp-classifier/trunk/debian/bin/ trunk/packages/rdp-classifier/trunk/debian/junit.xml trunk/packages/rdp-classifier/trunk/debian/patches/

[med-svn] r18584 - in trunk/packages: . swarm-cluster swarm-cluster/trunk

Author: tbooth-guest Date: 2015-01-19 14:56:45 + (Mon, 19 Jan 2015) New Revision: 18584 Added: trunk/packages/swarm-cluster/ trunk/packages/swarm-cluster/trunk/ trunk/packages/swarm-cluster/trunk/debian/ Log: Initial packaging for Swarm amplicon clusterer, wanted to for next version

[med-svn] r18585 - in trunk/packages/swarm-cluster/trunk/debian: . source

Author: tbooth-guest Date: 2015-01-19 14:57:43 + (Mon, 19 Jan 2015) New Revision: 18585 Added: trunk/packages/swarm-cluster/trunk/debian/README.Debian trunk/packages/swarm-cluster/trunk/debian/changelog trunk/packages/swarm-cluster/trunk/debian/compat

[med-svn] r18580 - in trunk/packages: . librdp-alignment-java librdp-alignment-java/trunk librdp-readseq-java librdp-readseq-java/trunk librdp-taxonomy-tree-java librdp-taxonomy-tree-java/trunk

Author: tbooth-guest Date: 2015-01-19 14:44:32 + (Mon, 19 Jan 2015) New Revision: 18580 Added: trunk/packages/librdp-alignment-java/ trunk/packages/librdp-alignment-java/trunk/ trunk/packages/librdp-alignment-java/trunk/debian/ trunk/packages/librdp-readseq-java/

[med-svn] r18581 - in trunk/packages/librdp-readseq-java/trunk/debian: . bin source

Author: tbooth-guest Date: 2015-01-19 14:46:19 + (Mon, 19 Jan 2015) New Revision: 18581 Added: trunk/packages/librdp-readseq-java/trunk/debian/README.Debian trunk/packages/librdp-readseq-java/trunk/debian/bin/ trunk/packages/librdp-readseq-java/trunk/debian/bin/rdp-readseq

[med-svn] r18586 - trunk/packages/swarm-cluster/trunk/debian

Author: tbooth-guest Date: 2015-01-19 14:58:43 + (Mon, 19 Jan 2015) New Revision: 18586 Modified: trunk/packages/swarm-cluster/trunk/debian/changelog trunk/packages/swarm-cluster/trunk/debian/control Log: Renamed source package. Binary still called 'swarm' for now. Modified:

[med-svn] r18582 - in trunk/packages/librdp-alignment-java/trunk/debian: . bin source

Author: tbooth-guest Date: 2015-01-19 14:49:28 + (Mon, 19 Jan 2015) New Revision: 18582 Added: trunk/packages/librdp-alignment-java/trunk/debian/README.Debian trunk/packages/librdp-alignment-java/trunk/debian/bin/ trunk/packages/librdp-alignment-java/trunk/debian/bin/rdp-alignment

[med-svn] r18583 - in trunk/packages/librdp-taxonomy-tree-java/trunk/debian: . source

Author: tbooth-guest Date: 2015-01-19 14:51:35 + (Mon, 19 Jan 2015) New Revision: 18583 Added: trunk/packages/librdp-taxonomy-tree-java/trunk/debian/changelog trunk/packages/librdp-taxonomy-tree-java/trunk/debian/compat trunk/packages/librdp-taxonomy-tree-java/trunk/debian/control

[med-svn] r18587 - trunk/packages/qiime/trunk/debian

Author: tbooth-guest Date: 2015-01-19 18:51:19 + (Mon, 19 Jan 2015) New Revision: 18587 Modified: trunk/packages/qiime/trunk/debian/changelog trunk/packages/qiime/trunk/debian/control Log: Added conflict with newer rdp-classifier. I know it makes no sense to conflict with a package that

[med-svn] r18574 - trunk/packages/vsearch/trunk/debian

Author: tbooth-guest Date: 2015-01-13 14:31:56 + (Tue, 13 Jan 2015) New Revision: 18574 Added: trunk/packages/vsearch/trunk/debian/README.source Modified: trunk/packages/vsearch/trunk/debian/changelog trunk/packages/vsearch/trunk/debian/rules Log: Small fixes to enable full cleanup

[med-svn] r18571 - trunk/packages

Author: tbooth-guest Date: 2015-01-13 14:21:27 + (Tue, 13 Jan 2015) New Revision: 18571 Added: trunk/packages/vsearch/ Log: Commit of my efforts to package VSearch This will be wanted once QIIME 1.9 lands. For now we can leave it sitting in SVN.

[med-svn] r18572 - trunk/packages/vsearch

Author: tbooth-guest Date: 2015-01-13 14:22:08 + (Tue, 13 Jan 2015) New Revision: 18572 Added: trunk/packages/vsearch/debian/ Log: another dir ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r18573 - in trunk/packages/vsearch: . trunk trunk/debian trunk/debian/source

Author: tbooth-guest Date: 2015-01-13 14:27:07 + (Tue, 13 Jan 2015) New Revision: 18573 Added: trunk/packages/vsearch/trunk/ trunk/packages/vsearch/trunk/debian/ trunk/packages/vsearch/trunk/debian/changelog trunk/packages/vsearch/trunk/debian/compat

[med-svn] r18504 - trunk/packages/bowtie/trunk/debian/upstream

Author: tbooth-guest Date: 2014-11-21 08:38:57 + (Fri, 21 Nov 2014) New Revision: 18504 Added: trunk/packages/bowtie/trunk/debian/upstream/edam Modified: trunk/packages/bowtie/trunk/debian/upstream/metadata Log: Experimenting with adding EDAM tags

[med-svn] r17340 - trunk/packages/velvet/trunk/debian

Author: tbooth-guest Date: 2014-06-30 08:53:16 + (Mon, 30 Jun 2014) New Revision: 17340 Added: trunk/packages/velvet/trunk/debian/VelvetOptimiser.README trunk/packages/velvet/trunk/debian/velvet-long.install Modified: trunk/packages/velvet/trunk/debian/changelog

[med-svn] r17341 - in trunk/packages: . velvetoptimiser velvetoptimiser/trunk

Author: tbooth-guest Date: 2014-06-30 09:01:52 + (Mon, 30 Jun 2014) New Revision: 17341 Added: trunk/packages/velvetoptimiser/ trunk/packages/velvetoptimiser/trunk/ trunk/packages/velvetoptimiser/trunk/debian/ Log: Package for VelvetOptimiser to complement Velvet, from Bio-Linux

[med-svn] r17348 - trunk/packages/velvet/trunk/debian

Author: tbooth-guest Date: 2014-06-30 10:28:00 + (Mon, 30 Jun 2014) New Revision: 17348 Modified: trunk/packages/velvet/trunk/debian/rules trunk/packages/velvet/trunk/debian/velvet-example.install Log: Include test_data.tar.xz instead of the data directory. Modified:

[med-svn] r17349 - trunk/packages/velvet/trunk/debian

Author: tbooth-guest Date: 2014-06-30 10:38:10 + (Mon, 30 Jun 2014) New Revision: 17349 Modified: trunk/packages/velvet/trunk/debian/rules Log: Remove MeteVelvet and VelvetOptimiser in dh_clean, not dh_install. Modified: trunk/packages/velvet/trunk/debian/rules

[med-svn] r17352 - trunk/packages/velvet/trunk/debian

Author: tbooth-guest Date: 2014-06-30 10:41:32 + (Mon, 30 Jun 2014) New Revision: 17352 Modified: trunk/packages/velvet/trunk/debian/changelog Log: -2biolinux1 Modified: trunk/packages/velvet/trunk/debian/changelog === ---

[med-svn] r16932 - in trunk/packages: . liboptimization-java liboptimization-java/trunk

Author: tbooth-guest Date: 2014-05-13 15:57:59 + (Tue, 13 May 2014) New Revision: 16932 Added: trunk/packages/liboptimization-java/ trunk/packages/liboptimization-java/trunk/ trunk/packages/liboptimization-java/trunk/debian/ Log: Commit initial packaging of this library needed for

[med-svn] r16933 - in trunk/packages/liboptimization-java/trunk/debian: . source

Author: tbooth-guest Date: 2014-05-13 16:01:07 + (Tue, 13 May 2014) New Revision: 16933 Added: trunk/packages/liboptimization-java/trunk/debian/README.source trunk/packages/liboptimization-java/trunk/debian/changelog trunk/packages/liboptimization-java/trunk/debian/compat

[med-svn] r16790 - in trunk/packages: . perm perm/trunk

Author: tbooth-guest Date: 2014-04-25 15:54:39 + (Fri, 25 Apr 2014) New Revision: 16790 Added: trunk/packages/perm/ trunk/packages/perm/trunk/ trunk/packages/perm/trunk/debian/ Log: Commit packaging for PerM as used on Bio-Linux ___

[med-svn] r16792 - trunk/packages/perm/trunk/debian

Author: tbooth-guest Date: 2014-04-25 15:59:44 + (Fri, 25 Apr 2014) New Revision: 16792 Removed: trunk/packages/perm/trunk/debian/README.Debian Modified: trunk/packages/perm/trunk/debian/copyright Log: minor cleanup Deleted: trunk/packages/perm/trunk/debian/README.Debian

[med-svn] r16791 - in trunk/packages/perm/trunk/debian: . patches source

Author: tbooth-guest Date: 2014-04-25 15:57:19 + (Fri, 25 Apr 2014) New Revision: 16791 Added: trunk/packages/perm/trunk/debian/README.Debian trunk/packages/perm/trunk/debian/README.source trunk/packages/perm/trunk/debian/changelog trunk/packages/perm/trunk/debian/compat

[med-svn] r16794 - in trunk/packages/python-cogent/trunk/debian: . patches

Author: tbooth-guest Date: 2014-04-25 16:29:31 + (Fri, 25 Apr 2014) New Revision: 16794 Added: trunk/packages/python-cogent/trunk/debian/patches/accept_newer_cdhit trunk/packages/python-cogent/trunk/debian/patches/parsinsert_not_in_caps Modified:

[med-svn] r16795 - trunk/packages/parsinsert/trunk/debian

Author: tbooth-guest Date: 2014-04-25 16:30:34 + (Fri, 25 Apr 2014) New Revision: 16795 Modified: trunk/packages/parsinsert/trunk/debian/rules Log: Fix small typo Modified: trunk/packages/parsinsert/trunk/debian/rules ===

[med-svn] r16752 - in trunk/packages/libcolt-java/trunk/debian: . patches

Author: tbooth-guest Date: 2014-04-22 14:49:20 + (Tue, 22 Apr 2014) New Revision: 16752 Added: trunk/packages/libcolt-java/trunk/debian/patches/build_without_aida_interface_defs.patch Modified: trunk/packages/libcolt-java/trunk/debian/changelog

[med-svn] r16659 - trunk/packages/acacia/trunk/debian

Author: tbooth-guest Date: 2014-04-11 08:57:40 + (Fri, 11 Apr 2014) New Revision: 16659 Modified: trunk/packages/acacia/trunk/debian/README.source Log: Tidy up my ramblings a bit in README.source. Modified: trunk/packages/acacia/trunk/debian/README.source

[med-svn] r16648 - in trunk/packages: . libhac-java libhac-java/trunk

Author: tbooth-guest Date: 2014-04-10 13:12:00 + (Thu, 10 Apr 2014) New Revision: 16648 Added: trunk/packages/libhac-java/ trunk/packages/libhac-java/trunk/ trunk/packages/libhac-java/trunk/debian/ Log: Libhac is a dependency for acacia 1.53. Fairly simple build.

[med-svn] r16649 - in trunk/packages/libhac-java/trunk/debian: . source

Author: tbooth-guest Date: 2014-04-10 13:13:42 + (Thu, 10 Apr 2014) New Revision: 16649 Added: trunk/packages/libhac-java/trunk/debian/changelog trunk/packages/libhac-java/trunk/debian/compat trunk/packages/libhac-java/trunk/debian/control

[med-svn] r16650 - in trunk/packages: . acacia acacia/trunk

Author: tbooth-guest Date: 2014-04-10 13:14:16 + (Thu, 10 Apr 2014) New Revision: 16650 Added: trunk/packages/acacia/ trunk/packages/acacia/trunk/ trunk/packages/acacia/trunk/debian/ Log: Initial commit of Acacia. ___ debian-med-commit

[med-svn] r16651 - in trunk/packages/acacia/trunk/debian: . bin source

Author: tbooth-guest Date: 2014-04-10 13:18:12 + (Thu, 10 Apr 2014) New Revision: 16651 Added: trunk/packages/acacia/trunk/debian/README.source trunk/packages/acacia/trunk/debian/acacia.desktop trunk/packages/acacia/trunk/debian/acacia.docs

[med-svn] r16652 - trunk/packages/libssj-java/trunk/debian

Author: tbooth-guest Date: 2014-04-10 14:48:01 + (Thu, 10 Apr 2014) New Revision: 16652 Modified: trunk/packages/libssj-java/trunk/debian/changelog trunk/packages/libssj-java/trunk/debian/control trunk/packages/libssj-java/trunk/debian/rules Log: Fix missing dependencies Modified:

[med-svn] r16577 - in trunk/packages: . libdsol1-java libdsol1-java/trunk

Author: tbooth-guest Date: 2014-04-07 10:11:20 + (Mon, 07 Apr 2014) New Revision: 16577 Added: trunk/packages/libdsol1-java/ trunk/packages/libdsol1-java/trunk/ trunk/packages/libdsol1-java/trunk/debian/ Log: Committing my work packaging DSOL, needed as a dependency of libssj-java

[med-svn] r16578 - in trunk/packages/libdsol1-java/trunk/debian: . patches source

Author: tbooth-guest Date: 2014-04-07 10:13:53 + (Mon, 07 Apr 2014) New Revision: 16578 Added: trunk/packages/libdsol1-java/trunk/debian/changelog trunk/packages/libdsol1-java/trunk/debian/compat trunk/packages/libdsol1-java/trunk/debian/control

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