Re: [pkg-bioc] Re: Genetics Program

2005-12-12 Thread Steffen Moeller
Am Samstag 10 Dezember 2005 15:54 schrieb Rafael Laboissiere: * Dirk Eddelbuettel [EMAIL PROTECTED] [2005-12-10 08:16]: Undoubtedly many of the CRAN/BioC packages would build and work just fine. But the problem is that a fair number require hand-holding to, say, properly translate CRAN

Re: [pkg-bioc] Re: Genetics Program

2005-12-10 Thread Rafael Laboissiere
* Steffen Moeller [EMAIL PROTECTED] [2005-12-08 18:09]: Am Donnerstag 08 Dezember 2005 17:34 schrieb Dirk Eddelbuettel: That is exactly the rub: I am not a BioC user, and I can't be the default maintainer for another few dozen (or dozen squared) packages. Could we arrange a BioC repository

Re: [pkg-bioc] Re: Genetics Program

2005-12-10 Thread Dirk Eddelbuettel
Replying to both Steffen and Rafael here: On 9 December 2005 at 10:41, Steffen Moeller wrote: | | Could we arrange a BioC repository for Alioth? | | Well we *do* have one in pkg-bioc [ which has refocussed on pkg-CRAN and | BioC but not been renamed ]. | Hm. We store the script there, but it

Re: [pkg-bioc] Re: Genetics Program

2005-12-10 Thread Rafael Laboissiere
* Dirk Eddelbuettel [EMAIL PROTECTED] [2005-12-10 08:16]: Undoubtedly many of the CRAN/BioC packages would build and work just fine. But the problem is that a fair number require hand-holding to, say, properly translate CRAN dependencies into Debian dependencies, make sure those are all

Re: Genetics Program

2005-12-08 Thread Dirk Eddelbuettel
On 8 December 2005 at 16:55, Andreas Tille wrote: | On Thu, 8 Dec 2005, Dirk Eddelbuettel wrote: | | That ITP is officially dead. Action, if any, can be had around the pkg-bioc | project on alioth where we have some rough code to spew out hundreds of .deb | packages based on sources from both

Re: Genetics Program

2005-12-08 Thread Steffen Moeller
Hi all, Am Donnerstag 08 Dezember 2005 17:34 schrieb Dirk Eddelbuettel: On 8 December 2005 at 16:55, Andreas Tille wrote: What is the story with emboss? Couldn't find it for the currently ongoing preparations of the next Quantian update. Are there binaries somewhere? EMBOSS would be lovely

Re: Genetics Program

2005-12-08 Thread Dirk Eddelbuettel
On 8 December 2005 at 18:09, Steffen Moeller wrote: | What is the story with emboss? Couldn't find it for the currently ongoing | preparations of the next Quantian update. Are there binaries somewhere? | EMBOSS would be lovely to have, indeed. Go and package it, I'm sure Andreas will sponsor

Re: [pkg-bioc] Re: Genetics Program

2005-12-08 Thread Dirk Eddelbuettel
On 8 December 2005 at 18:03, Andreas Tille wrote: | Are you looking for biological software in and outside Debian in general? | I hope you noticed | | http://www.debian.org/devel/debian-med/microbio Nice page(s that I was in fact unaware of. I only need to know your med-* meta packages :)

Re: Genetics Program

2005-12-07 Thread Dirk Eddelbuettel
On 7 December 2005 at 17:07, Christopher David Desjardins wrote: | Hi- | I am MSc student at the University of Alberta studying ecology. | Recently I've decide to dive into population genetics and I am curious | if there are any good genetics programs available for linux and debian | in

Re: Genetics Program

2005-12-07 Thread Andreas Tille
On Wed, 7 Dec 2005, Dirk Eddelbuettel wrote: The next Quantian release will have once again a large selection of tools incl a complete set of BioConductor packages (that part is not in Debian) but What BioConductor version are you using? The BioConductor movement to official Debian is a