Bug#893656: transition: theano 0.9 -> 1.0 - please update lasagne

2018-03-22 Thread Rebecca N. Palmer
lasagne - 3 test failures; fixed upstream by https://github.com/Lasagne/Lasagne/pull/836 Latest upstream (37ca134; only packaging change was to drop remove-deprecated.patch) doesn't have these failures. There is a warning that cuda_convnet is no longer available with Theano 1.0, but that has

Bug#893729: sympy FTBFS: python3-distutils is now a separate package

2018-03-21 Thread Rebecca N. Palmer
setuptools instead of distutils as recommended by the PyPA? Le mer. 21 mars 2018 à 20:45, Rebecca N. Palmer <rebecca_pal...@zoho.com> a écrit : Source: sympy Severity: serious Control: tags -1 patch X-Debbugs-Cc: debian-pyt...@lists.debian.org python3-distutils has been moved out of pyt

Bug#893729: sympy FTBFS: python3-distutils is now a separate package

2018-03-21 Thread Rebecca N. Palmer
Source: sympy Severity: serious Control: tags -1 patch X-Debbugs-Cc: debian-pyt...@lists.debian.org python3-distutils has been moved out of python3.6 (as of 3.6.5~rc1-2), so if you need it, please build-depend on it. (Or python3-setuptools, given that this looks like it might prefer that.)

Bug#893656: transition: theano 0.9 -> 1.0

2018-03-20 Thread Rebecca N. Palmer
Source: theano Severity: wishlist (Posting here rather than on debian-release as the formal transition process is rarely used, and its tools mostly useless, for non-compiled cases.) Theano 1.0 (currently in Salsa) contains some API-breaking changes:

Bug#882559: python-xarray FTBFS - GenericNetCDFDataTest.test_cross_engine_read_write_netcdf3 failed

2017-11-23 Thread Rebecca N. Palmer
Package: python3-xarray Version: 0.9.2-1 Severity: serious Control: tags -1 upstream Two netcdf tests fail in current sid (see log below). This is known upstream as https://github.com/pydata/xarray/issues/1721 , according to which the actual problem is that scipy has been writing netcdf files

Bug#871208: python-xarray tests failures

2017-11-23 Thread Rebecca N. Palmer
Control: tags -1 upstream fixed-upstream This appears to be 2 separate bugs, both triggered by using pandas 0.20 and fixed upstream. groupby_bins: https://github.com/pydata/xarray/issues/1386 https://github.com/pydata/xarray/pull/1390 test_sel: this is really a pandas bug (fixed in 0.21, but

Bug#878596: fixed in Alioth

2017-10-19 Thread Rebecca N. Palmer
Control: tags -1 patch fixed-upstream pending Ready for upload (the GPU tests again haven't been run, but this shouldn't touch those parts). -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#877419: [Help] Exclusion did not worked (Was: Bug#877419: Bug#877700: RM: pandas [arm64 armel armhf mips mips64el mipsel s390x] ...)

2017-10-15 Thread Rebecca N. Palmer
raise nose.SkipTest("known failure of test_stata on non-little endian") E NameError: name 'nose' is not defined You need an 'import nose' first, if the test doesn't already have one. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#878596: theano: FTBFS on big-endian systems - test_pooling_with_tensor_vars fails

2017-10-14 Thread Rebecca N. Palmer
Package: python-theano Version: 0.9.0+dfsg-1 Severity: serious Suspect the problem is theano/theano/tensor/signal/pool.py:650, which effectively does int32 = *(int64 *)(pointer_to_some_int_type) - if some_int_type is int32, that works on little-endian but not big-endian. --

Bug#877316: clblas: Crashes on single-precision-only hardware, due to double-precision literals

2017-10-04 Thread Rebecca N. Palmer
I intend to file this upstream after investigating further (with a patch if I can); the main purpose of this Debian bug is to explain why I can't fully test the theano package I recently pushed. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org

Bug#877316: clblas: Crashes on single-precision-only hardware, due to double-precision literals

2017-09-30 Thread Rebecca N. Palmer
Package: libclblas2 Version: 2.12-1 Control: tags -1 upstream Control: affects -1 beignet-opencl-icd Some clblas operations use '0.0' (a double-precision literal) not '0.0f' (a single-precision literal) even when processing single-precision arrays. This causes it to crash on GPUs that don't

Bug#835531: theano: fail of test_csr_correct_output_faster_than_scipy at times (FTBFS)

2017-02-14 Thread Rebecca N. Palmer
buildds: don't let it fail the whole build. Author: Rebecca N. Palmer <rebecca_pal...@zoho.com> Bug-Debian: https://bugs.debian.org/835531 Forwarded: not-needed diff --git a/theano/sparse/tests/test_basic.py b/theano/sparse/tests/test_basic.py index 8c183b9..03d79f1 100644 --- a/theano/sparse

Bug#855102: (no subject)

2017-02-14 Thread Rebecca N. Palmer
and negative stride handling Cast values, not pointers, from int64 to int32. Remember that first-in-index order (numpy) and first-in-memory-order (BLAS) are not always the same thing. Bump c_code_cache_version to make sure existing installs use the fixes. Author: Rebecca N. Palmer <rebecca_

Bug#855102: theano: SamplingDot broken on negative-stride arrays

2017-02-13 Thread Rebecca N. Palmer
Package: theano Version: 0.8.2-3 Severity: important Control: tags -1 upstream Because Numpy arrays' data pointer is the first element in *index* order but BLAS expects the first element in *memory* order, simply calling a BLAS function as in SamplingDotCSR

Bug#831541: theano: single GradientError and WrongValues in tests on s390x, ppc64 and sparc

2017-02-13 Thread Rebecca N. Palmer
Found the problem: the affected functions ( https://sources.debian.net/src/theano/0.8.2-4/theano/sparse/opt.py/#L862 , https://sources.debian.net/src/theano/0.8.2-4/theano/sparse/opt.py/#L1902 ) cast a pointer-to-intptr_t (64 bit) to a pointer-to-int (32-bit). Which isn't just broken on

Bug#848764: (no subject)

2017-02-06 Thread Rebecca N. Palmer
Control: tags -1 patch Three patches because this is logically three bugs, though it's filed as two upstream: https://github.com/Theano/Theano/issues/5494 https://github.com/Theano/Theano/issues/5396 First patch taken from upstream

Bug#831540: (no subject)

2017-02-06 Thread Rebecca N. Palmer
Control: forwarded -1 https://github.com/Theano/Theano/issues/5498 Control: tags -1 patch I don't think this is a regression - it's Python 3 specific (numpy.array(list of longs, which this test uses on Python 2)=int64 array, but numpy(list of Python 3 ints)=int_nativesize array; see above

Bug#737153: OpenCVModules.cmake not installed, causing visp FTBFS

2014-02-14 Thread Rebecca N. Palmer
libopencv-dev doesn't pull in the Java libraries; I don't know if the appropriate fix is that it should, or that the cmake script shouldn't be looking for them when building C(++). -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org