Bug#935493: ITP: r-cran-rstanarm -- GNU R bayesian applied regression modeling via stan

Package: wnpp Severity: wishlist Subject: ITP: r-cran-rstanarm -- GNU R bayesian applied regression modeling via stan Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-rstanarm Version : 2.18.2 Upstream Author : Jonah Gabry, * URL : https

Bug#935430: ITP: r-cran-brms -- GNU R Bayesian regression models using 'Stan'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-brms -- GNU R Bayesian regression models using 'Stan' Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-brms Version : 2.9.0 Upstream Author : Paul-Christian Bürkner * URL : https

Bug#935429: ITP: r-cran-rwiener -- GNU R Wiener process distribution functions

Package: wnpp Severity: wishlist Subject: ITP: r-cran-rwiener -- GNU R Wiener process distribution functions Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-rwiener Version : 1.3 Upstream Author : Dominik Wabersich * URL : https://cran.r

Bug#935412: ITP: r-cran-shinystan -- GNU R interactive diagnostics and analysis for Bayesian models

Package: wnpp Severity: wishlist Subject: ITP: r-cran-shinystan -- GNU R interactive diagnostics and analysis for Bayesian models Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-shinystan Version : 2.5.0 Upstream Author : Jonah Gabry, * URL

Bug#935406: ITP: r-cran-systemfit -- GNU R estimating systems of simultaneous equations

Package: wnpp Severity: wishlist Subject: ITP: r-cran-systemfit -- GNU R estimating systems of simultaneous equations Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-systemfit Version : 1.1 Upstream Author : Arne Henningsen and Jeff D. Hamann * URL

Bug#935399: ITP: r-cran-spelling -- Tools for Spell Checking in R

Package: wnpp Severity: wishlist Subject: ITP: r-cran-spelling -- Tools for Spell Checking in R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-spelling Version : 2.1 Upstream Author : Copyright: (FIXME: year)-2019 Jeroen Ooms, * URL

Bug#924294: Maintaining picosat in Debian Science team (Was: Bug#924294: ITP: python-pycosat -- Python bindings to picosat)

, Mar 11, 2019 at 08:32:24AM +0100, Andreas Tille wrote: > Hi Michael, > > when I was doing the packaging the Python API for picosat I realised > that its lagging a bit behind upstream. I have not realised any > drawback currently but when I checked I considered a good idea to >

Bug#933244: ITP: r-cran-multidimbio -- GNU R multivariate analysis and visualization for biological data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-multidimbio -- GNU R multivariate analysis and visualization for biological data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-multidimbio Version : 1.1.1 Upstream Author : Copyright: (FIXME

Bug#933243: ITP: r-cran-pdftools -- GNU R text extraction, rendering and converting of PDF documents

Package: wnpp Severity: wishlist Subject: ITP: r-cran-pdftools -- GNU R text extraction, rendering and converting of PDF documents Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-pdftools Version : 2.2 Upstream Author : Jeroen Ooms * URL

Bug#933238: ITP: r-cran-qpdf -- GNU R split, combine and compress PDF files

Package: wnpp Severity: wishlist Subject: ITP: r-cran-qpdf -- GNU R split, combine and compress PDF files Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-qpdf Version : 1.1 Upstream Author : Jeroen Ooms, * URL : https://cran.r-project.org

Bug#933237: ITP: r-cran-gridgraphics -- GNU R redraw base graphics using 'grid' graphics

Package: wnpp Severity: wishlist Subject: ITP: r-cran-gridgraphics -- GNU R redraw base graphics using 'grid' graphics Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-gridgraphics Version : 0.4 Upstream Author : Paul Murrell, * URL

Bug#931832: If you need sponsoring please talk to me

On Fri, Jul 26, 2019 at 08:51:58AM +0300, Коля Гурьев wrote: > 25.07.2019 23:20, Andreas Tille пишет: > > Unfortunately I can not find a debian/ dir in the debian/master branch. > > Please explain your Git layout and how I can build it using gbp if you > > want to be spons

Bug#931832: If you need sponsoring please talk to me

Hi, I'd like to help fixing #932457 which is blocked by #931832. So I'd love to sponsor rlottie and thus I did gbp clone https://salsa.debian.org/mymedia-guest/rlottie Unfortunately I can not find a debian/ dir in the debian/master branch. Please explain your Git layout and how I can build

Bug#932807: ITP: r-cran-sodium -- GNU R modern and easy-to-use crypto library

Package: wnpp Severity: wishlist Subject: ITP: r-cran-sodium -- GNU R modern and easy-to-use crypto library Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-sodium Version : 1.1 Upstream Author : Jeroen Ooms * URL : https://cran.r

Bug#932798: ITP: r-cran-mvnfast -- GNU R fast multivariate normal and student's t methods

Package: wnpp Severity: wishlist Subject: ITP: r-cran-mvnfast -- GNU R fast multivariate normal and student's t methods Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-mvnfast Version : 0.2.5 Upstream Author : Matteo Fasiolo, * URL

Bug#813815: Open ITPs (turned into RFPs)

Hi Joost, you have at least two long standing ITPs (#813815 - r-cran-nfactors, #835082 - r-cran-semplot, may be others) which were turned into RFPs automatically. Could you give some statement whether these packages might remain interesting for you and whether we should fire up

Bug#932642: ITP: r-cran-polycor -- GNU R polychoric and polyserial correlations

Package: wnpp Severity: wishlist Subject: ITP: r-cran-polycor -- GNU R polychoric and polyserial correlations Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-polycor Version : 0.7 Upstream Author : John Fox * URL : https://cran.r

Bug#932334: ITP: r-cran-linprog -- GNU R linear programming / optimization

Package: wnpp Severity: wishlist Subject: ITP: r-cran-linprog -- GNU R linear programming / optimization Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-linprog Version : 0.9 Upstream Author : Arne Henningsen * URL : https://cran.r

Bug#932306: ITP: r-cran-ggbeeswarm -- GNU R categorical scatter (violin point) plots

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggbeeswarm -- GNU R categorical scatter (violin point) plots Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-ggbeeswarm Version : 0.6.0 Upstream Author : Erik Clarke, * URL : https

Bug#932305: ITP: r-cran-vipor -- GNU R plot categorical data using quasirandom noise and density estimates

Package: wnpp Severity: wishlist Subject: ITP: r-cran-vipor -- GNU R plot categorical data using quasirandom noise and density estimates Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-vipor Version : 0.4.5 Upstream Author : Scott Sherrill-Mix, Erik

Bug#932294: ITP: skesa -- strategic Kmer extension for scrupulous assemblies

Package: wnpp Severity: wishlist Subject: ITP: skesa -- strategic Kmer extension for scrupulous assemblies Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: skesa Version : 2.3.0 Upstream Author : Alexandre Souvorov, Richa Agarwala, David J. Lipman * URL

Bug#932293: ITP: r-cran-hsaur3 -- Handbook of Statistical Analyses Using R (3rd Edition)

Package: wnpp Severity: wishlist Subject: ITP: r-cran-hsaur3 -- Handbook of Statistical Analyses Using R (3rd Edition) Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-hsaur3 Version : 1.0 Upstream Author : Torsten Hothorn and Brian S. Everitt * URL

Bug#932285: ITP: r-cran-mice -- GNU R multivariate imputation by chained equations

Package: wnpp Severity: wishlist Subject: ITP: r-cran-mice -- GNU R multivariate imputation by chained equations Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-mice Version : 3.6.0 Upstream Author : Stef van Buuren, * URL : https

Bug#932276: ITP: r-cran-mitml -- GNU R tools for multiple imputation in multilevel modeling

Package: wnpp Severity: wishlist Subject: ITP: r-cran-mitml -- GNU R tools for multiple imputation in multilevel modeling Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-mitml Version : 0.3 Upstream Author : Simon Grund, Alexander Robitzsch, Oliver

Bug#932275: ITP: r-cran-jomo -- GNU R multilevel joint modelling multiple imputation

Package: wnpp Severity: wishlist Subject: ITP: r-cran-jomo -- GNU R multilevel joint modelling multiple imputation Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-jomo Version : 2.6 Upstream Author : Matteo Quartagno, James Carpenter * URL

Bug#932273: ITP: r-cran-ordinal -- GNU R regression models for ordinal data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ordinal -- GNU R regression models for ordinal data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-ordinal Version : 2019.4 Upstream Author : Rune Haubo Bojesen Christensen * URL

Bug#932268: ITP: r-cran-pan -- GNU R multiple imputation for multivariate panel or clustered data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-pan -- GNU R multiple imputation for multivariate panel or clustered data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-pan Version : 1.6 Upstream Author : Original by Joseph L. Schafer * URL

Bug#932165: ITP: r-cran-mets -- GNU R analysis of multivariate event times

Package: wnpp Severity: wishlist Subject: ITP: r-cran-mets -- GNU R analysis of multivariate event times Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-mets Version : 1.2.5 Upstream Author : Klaus K. Holst and Thomas Scheike * URL

Bug#932164: ITP: r-cran-timereg -- GNU R flexible regression models for survival data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-timereg -- GNU R flexible regression models for survival data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-timereg Version : 1.9.3 Upstream Author : Thomas Scheike with contributions from

Bug#932139: ITP: r-cran-deoptim -- GNU R global optimization by differential evolution

Package: wnpp Severity: wishlist Subject: ITP: r-cran-deoptim -- GNU R global optimization by differential evolution Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-deoptim Version : 2.2 Upstream Author : David Ardia, * URL : https

Bug#931952: ITP: r-cran-party -- GNU R laboratory for recursive partytioning

Package: wnpp Severity: wishlist Subject: ITP: r-cran-party -- GNU R laboratory for recursive partytioning Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-party Version : 1.3 Upstream Author : Torsten Hothorn, * URL : https://cran.r

Bug#931929: ITP: r-cran-rdpack -- GNU R update and manipulate Rd documentation objects

Package: wnpp Severity: wishlist Subject: ITP: r-cran-rdpack -- GNU R update and manipulate Rd documentation objects Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-rdpack Version : 0.11 Upstream Author : Georgi N. Boshnakov, * URL

Bug#931925: ITP: r-cran-gbrd -- GNU R utilities for processing Rd objects and files

Package: wnpp Severity: wishlist Subject: ITP: r-cran-gbrd -- GNU R utilities for processing Rd objects and files Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-gbrd Version : 0.4 Upstream Author : Georgi N. Boshnakov * URL : https

Bug#931924: ITP: r-cran-clubsandwich -- GNU R cluster-robust (Sandwich) variance estimators with small-sample

Package: wnpp Severity: wishlist Subject: ITP: r-cran-clubsandwich -- GNU R cluster-robust (Sandwich) variance estimators with small-sample Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-clubsandwich Version : 0.3.5 Upstream Author : James

Bug#931916: ITP: r-cran-spatialreg -- GNU R spatial regression analysis

Package: wnpp Severity: wishlist Subject: ITP: r-cran-spatialreg -- GNU R spatial regression analysis Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-spatialreg Version : 1.1 Upstream Author : Roger Bivand, * URL : https://cran.r

Bug#931835: ITP: r-cran-vctrs -- GNU R vector helpers

Package: wnpp Severity: wishlist Subject: ITP: r-cran-vctrs -- GNU R vector helpers Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-vctrs Version : 0.2.0 Upstream Author : Hadley Wickham, * URL : https://cran.r-project.org/package=vctrs

Bug#931833: ITP: r-cran-zeallot -- GNU R multiple, unpacking, and destructuring assignment

Package: wnpp Severity: wishlist Subject: ITP: r-cran-zeallot -- GNU R multiple, unpacking, and destructuring assignment Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-zeallot Version : 0.1.0 Upstream Author : Nathan Teetor, * URL

Bug#931763: ITP: r-cran-performance -- GNU R assessment of regression models performance

Package: wnpp Severity: wishlist Subject: ITP: r-cran-performance -- GNU R assessment of regression models performance Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-performance Version : 0.2.0 Upstream Author : Daniel Lüdecke, * URL

Bug#931762: ITP: r-cran-bayestestr -- GNU R understand and describe Bayesian models and posterior distributions

Package: wnpp Severity: wishlist Subject: ITP: r-cran-bayestestr -- GNU R understand and describe Bayesian models and posterior distributions Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-bayestestr Version : 0.2.2 Upstream Author : Dominique

Bug#931759: ITP: r-cran-insight -- GNU R easy access to model information for various model objects

Package: wnpp Severity: wishlist Subject: ITP: r-cran-insight -- GNU R easy access to model information for various model objects Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-insight Version : 0.4.0 Upstream Author : Daniel Lüdecke, * URL

Bug#931708: ITP: r-cran-pcict -- GNU R Implementation of POSIXct work-alike calendars

Package: wnpp Severity: wishlist Subject: ITP: r-cran-pcict -- GNU R Implementation of POSIXct work-alike calendars Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-pcict Version : 0.5 Upstream Author : David Bronaugh for the Pacific Climate * URL

Bug#931700: ITP: r-cran-rgdal -- GNU R bindings for the geospatial data abstraction library

Package: wnpp Severity: wishlist Subject: ITP: r-cran-rgdal -- GNU R bindings for the geospatial data abstraction library Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-rgdal Version : 1.4 Upstream Author : Roger Bivand, * URL : https

Bug#931683: ITP: r-cran-spacetime -- GNU R classes and methods for spatio-temporal data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-spacetime -- GNU R classes and methods for spatio-temporal data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-spacetime Version : 1.2 Upstream Author : Edzer Pebesma, * URL : https

Bug#931681: ITP: r-cran-intervals -- GNU R tools for working with points and intervals

Package: wnpp Severity: wishlist Subject: ITP: r-cran-intervals -- GNU R tools for working with points and intervals Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-intervals Version : 0.15.1 Upstream Author : Richard Bourgon * URL

Bug#931599: ITP: r-bioc-ihw -- GNU R independent hypothesis weighting

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-ihw -- GNU R independent hypothesis weighting Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-ihw Version : 1.12.0 Upstream Author : Nikos Ignatiadis, * URL : https://bioconductor.org

Bug#931494: ITP: r-bioc-lpsymphony -- Symphony integer linear programming solver in GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-lpsymphony -- Symphony integer linear programming solver in GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-lpsymphony Version : 1.12.0 Upstream Author : Vladislav Kim, * URL

Bug#645078: To be salvaged by Debian Science or removed: coinor-dylp

Hi folks, by chance I stumbled upon coinor-dylp[1]. As far as I remember Soeren Sonneburg is MIA and he is fine if any of his package are taken over by Debian Science team (its orphaned anyway - see #645078). I've checked popcon vor votes[2] which is not really impressive - but may be that's

Bug#931450: ITP: r-cran-fdrtool -- GNU R estimation of false discovery dates and higher criticism

Package: wnpp Severity: wishlist Subject: ITP: r-cran-fdrtool -- GNU R estimation of false discovery dates and higher criticism Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-fdrtool Version : 1.2.15 Upstream Author : Bernd Klaus and Korbinian

Bug#931407: ITP: r-bioc-biocfilecache -- GNU R management of files across sessions

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-biocfilecache -- GNU R management of files across sessions Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-biocfilecache Version : 1.8.0 Upstream Author : Lori Shepherd, * URL : https

Bug#931394: ITP: r-bioc-rhtslib -- HTSlib high-throughput sequencing library as GNU R package

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-rhtslib -- HTSlib high-throughput sequencing library as GNU R package Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-rhtslib Version : 1.16.1 Upstream Author : Nathaniel Hayden, * URL

Bug#931103: ITP: r-cran-discriminer -- GNU R tools of the trade for discriminant analysis

Package: wnpp Severity: wishlist Subject: ITP: r-cran-discriminer -- GNU R tools of the trade for discriminant analysis Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-discriminer Version : 0.1 Upstream Author : Gaston Sanchez, * URL

Bug#931100: ITP: r-cran-assertive.sets -- GNU R assertions to check properties of sets

Package: wnpp Severity: wishlist Subject: ITP: r-cran-assertive.sets -- GNU R assertions to check properties of sets Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-assertive.sets Version : 0.0 Upstream Author : Richard Cotton * URL

Bug#931099: ITP: r-cran-assertive.base -- GNU R lightweight core of the 'assertive' package

Package: wnpp Severity: wishlist Subject: ITP: r-cran-assertive.base -- GNU R lightweight core of the 'assertive' package Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-assertive.base Version : 0.0 Upstream Author : Richard Cotton, * URL

Bug#931095: ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics

Package: wnpp Severity: wishlist Subject: ITP: r-other-chbutils -- GNU R utilities from Harvard School of Public Health Bioinformatics Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-other-chbutils Version : 0.1+git20171026.a226cee Upstream Author

Bug#931093: ITP: r-cran-nozzle.r1 -- GNU R nozzle reports

Package: wnpp Severity: wishlist Subject: ITP: r-cran-nozzle.r1 -- GNU R nozzle reports Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-nozzle.r1 Version : 1.1 Upstream Author : Nils Gehlenborg * URL : https://cran.r-project.org/package

Bug#931075: ITP: r-cran-lasso2 -- GNU R L1 constrained estimation aka `lasso'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-lasso2 -- GNU R L1 constrained estimation aka `lasso' Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-lasso2 Version : 1.2 Upstream Author : Justin Lokhorst, Bill Venables and Berwin Turlach

Bug#931074: ITP: r-cran-logging -- GNU R logging package

Package: wnpp Severity: wishlist Subject: ITP: r-cran-logging -- GNU R logging package Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-logging Version : 0.9 Upstream Author : Mario Frasca, * URL : https://cran.r-project.org/package

Bug#931073: ITP: r-cran-ggdendro -- GNU R create dendrograms and tree diagrams using 'ggplot2'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggdendro -- GNU R create dendrograms and tree diagrams using 'ggplot2' Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-ggdendro Version : 0.1 Upstream Author : Andrie de Vries, * URL

Bug#931067: ITP: r-bioc-consensusclusterplus -- GNU R determining cluster count and membership

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-consensusclusterplus -- GNU R determining cluster count and membership Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-consensusclusterplus Version : 1.48.0 Upstream Author : Matt Wilkerson

Bug#931065: ITP: r-bioc-all -- Bioconductor data package used by several bioc tools

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-all -- Bioconductor data package used by several bioc tools Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-all Version : 1.26.0 Upstream Author : Xiaochun Li * URL : https

Bug#931055: ITP: r-bioc-complexheatmap -- make complex heatmaps using GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-complexheatmap -- make complex heatmaps using GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-complexheatmap Version : 2.0.0 Upstream Author : Zuguang Gu * URL : https

Bug#931054: ITP: r-cran-cowplot -- GNU R streamlined plot theme and plot annotations for 'ggplot2'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-cowplot -- GNU R streamlined plot theme and plot annotations for 'ggplot2' Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-cowplot Version : 0.9.4 Upstream Author : Claus O. Wilke, * URL

Bug#931053: ITP: r-cran-cowplot -- GNU R streamlined plot theme and plot annotations for 'ggplot2'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-cowplot -- GNU R streamlined plot theme and plot annotations for 'ggplot2' Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-cowplot Version : 0.9.4 Upstream Author : Claus O. Wilke, * URL

Bug#931050: ITP: r-cran-clue -- GNU R cluster ensembles

Package: wnpp Severity: wishlist Subject: ITP: r-cran-clue -- GNU R cluster ensembles Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-clue Version : 0.3 Upstream Author : Kurt Hornik, * URL : https://cran.r-project.org/package=clue

Bug#931049: ITP: r-cran-getoptlong -- GNU R parsing command-Line arguments and variable interpolation

Package: wnpp Severity: wishlist Subject: ITP: r-cran-getoptlong -- GNU R parsing command-Line arguments and variable interpolation Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-getoptlong Version : 0.1.7 Upstream Author : Zuguang Gu * URL

Bug#731599: Usage of locfit is questionable due to its non-free license

Hi, as you can see in the longish discussion on the "Intend to Package" claim to package locfit for Debian[1] the license of locfit is problematic. I'm more and more stumbling upon use cases of locfit from CRAN (recently in DESeq - thus the author Simon Anders is explicitly CCed) but also in

Bug#930545: ITP: gffread -- GFF/GTF format conversions, region filtering, FASTA sequence extraction

Package: wnpp Severity: wishlist Subject: ITP: gffread -- GFF/GTF format conversions, region filtering, FASTA sequence extraction Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: gffread Version : 0.11.2 Upstream Author : Geo Pertea * URL

Bug#929497: ITP: virulencefinder -- identify virulence genes in total or partial sequenced isolates of bacteria

Package: wnpp Severity: wishlist Subject: ITP: virulencefinder -- identify virulence genes in total or partial sequenced isolates of bacteria Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: virulencefinder Version : 0.0+git20190402.4812325 Upstream Author

Bug#929496: ITP: python-cgecore -- Python3 module for the Center for Genomic Epidemiology

Package: wnpp Severity: wishlist Subject: ITP: python-cgecore -- Python3 module for the Center for Genomic Epidemiology Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: python-cgecore Version : 1.4.4 Upstream Author : Center for Genomic Epidemiology * URL

Bug#928763: ITP: r-other-wasabi -- prepare Sailfish and Salmon output for downstream analysis using GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-other-wasabi -- prepare Sailfish and Salmon output for downstream analysis using GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-other-wasabi Version : 1.0.0 Upstream Author : Richard Smith-Unna, Rob

Bug#928761: ITP: r-bioc-rhdf5 -- BioConductor HDF5 interface to R

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-rhdf5 -- BioConductor HDF5 interface to R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-rhdf5 Version : 2.26.2 Upstream Author : Bernd Fischer, * URL : https://bioconductor.org

Bug#928667: ITP: r-cran-fontquiver -- set of installed fonts for GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-cran-fontquiver -- set of installed fonts for GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-fontquiver Version : 0.2.1 Upstream Author : Lionel Henry, * URL : https://cran.r

Bug#928656: ITP: r-cran-fontliberation -- Liberation Fonts for GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-cran-fontliberation -- Liberation Fonts for GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-fontliberation Version : 0.1.0 Upstream Author : Lionel Henry, Pravin Satpute, Steve Matteson, * URL

Bug#928654: ITP: r-cran-fontbitstreamvera -- GNU R fonts with 'Bitstream Vera Fonts' license

Package: wnpp Severity: wishlist Subject: ITP: r-cran-fontbitstreamvera -- GNU R fonts with 'Bitstream Vera Fonts' license Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-fontbitstreamvera Version : 0.1.1 Upstream Author : Lionel Henry, * URL

Bug#928611: ITP: r-cran-diffobj -- diffs for GNU R objects

Package: wnpp Severity: wishlist Subject: ITP: r-cran-diffobj -- diffs for GNU R objects Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-diffobj Version : 0.2.2 Upstream Author : Brodie Gaslam, * URL : https://cran.r-project.org/package

Bug#928606: ITP: r-cran-ggthemes -- extra themes, scales and geoms for r-cran-ggplot2

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggthemes -- extra themes, scales and geoms for r-cran-ggplot2 Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-ggthemes Version : 4.1.1 Upstream Author : Jeffrey B. Arnold, * URL

Bug#927975: ITP: r-bioc-rhdf5lib -- GNU R hdf5 library

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-rhdf5lib -- GNU R hdf5 library Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-bioc-rhdf5lib Version : 1.4.3 Upstream Author : Mike Smith * URL : https://bioconductor.org/packages/Rhdf5lib

Bug#926995: ITP: umis -- tools for processing UMI RNA-tag data

Package: wnpp Severity: wishlist Subject: ITP: umis -- tools for processing UMI RNA-tag data Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: umis Version : 1.0.3 Upstream Author : Valentine Svensson * URL : https://github.com/vals/umis * License

Bug#926978: ITP: biobambam2 -- tools for early stage alignment file processing

Package: wnpp Severity: wishlist Subject: ITP: biobambam2 -- tools for early stage alignment file processing Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: biobambam2 Version : 2.0.95 Upstream Author : German Tischler * URL : https

Bug#926964: ITP: libmaus2 -- collection of data structures and algorithms for biobambam

Package: wnpp Severity: wishlist Subject: ITP: libmaus2 -- collection of data structures and algorithms for biobambam Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: libmaus2 Version : 2.0.611 Upstream Author : German Tischler * URL : https

Bug#926944: ITP: atropos -- NGS read trimming tool that is specific, sensitive, and speedy

Package: wnpp Severity: wishlist Subject: ITP: atropos -- NGS read trimming tool that is specific, sensitive, and speedy Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: atropos Version : 1.1.21 Upstream Author : Marcel Martin * URL : https

Bug#926844: ITP: r-cran-psychotree -- GNU R recursive partitioning based on psychometric models

Package: wnpp Severity: wishlist Subject: ITP: r-cran-psychotree -- GNU R recursive partitioning based on psychometric models Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-psychotree Version : 0.15 Upstream Author : Achim Zeileis, * URL

Bug#926838: ITP: r-cran-psychotools -- GNU R psychometric modeling infrastructure

Package: wnpp Severity: wishlist Subject: ITP: r-cran-psychotools -- GNU R psychometric modeling infrastructure Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-psychotools Version : 0.5 Upstream Author : Achim Zeileis, * URL : https

Bug#926835: ITP: r-cran-partykit -- GNU R toolkit for recursive partytioning

Package: wnpp Severity: wishlist Subject: ITP: r-cran-partykit -- GNU R toolkit for recursive partytioning Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-partykit Version : 1.2 Upstream Author : Torsten Hothorn, * URL : https://cran.r

Bug#926834: ITP: r-cran-inum -- GNU R interval and enum-type representation of vectors

Package: wnpp Severity: wishlist Subject: ITP: r-cran-inum -- GNU R interval and enum-type representation of vectors Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-inum Version : 1.0 Upstream Author : Torsten Hothorn * URL : https

Bug#926833: ITP: r-cran-psyphy -- functions for analyzing psychophysical data in GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-cran-psyphy -- functions for analyzing psychophysical data in GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-psyphy Version : 0.1 Upstream Author : Kenneth Knoblauch * URL : https

Bug#926649: ITP: r-cran-psychometric -- GNU R applied psychometric theory

Package: wnpp Severity: wishlist Subject: ITP: r-cran-psychometric -- GNU R applied psychometric theory Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-psychometric Version : 2.2 Upstream Author : Thomas D. Fletcher * URL : https://cran.r

Bug#926648: ITP: r-cran-multilevel -- GNU R multilevel functions for applied psychology

Package: wnpp Severity: wishlist Subject: ITP: r-cran-multilevel -- GNU R multilevel functions for applied psychology Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-multilevel Version : 2.6 Upstream Author : Paul Bliese * URL : https

Bug#926416: ITP: conda -- OS-agnostic, system-level binary package manager and ecosystem

Package: wnpp Severity: wishlist Subject: ITP: conda -- OS-agnostic, system-level binary package manager and ecosystem Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: conda Version : 4.6.10 Upstream Author : xx-20yy * URL : https://conda.io

Bug#926403: ITP: python-fhirclient -- Python 3 SMART on FHIR client

Package: wnpp Severity: wishlist Subject: ITP: python-fhirclient -- Python 3 SMART on FHIR client Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: python-fhirclient Version : 3.0.0 Upstream Author : Boston Children's Hospital * URL : https

Bug#925875: ITP: bbmap -- short read aligner and other bioinformatic tools

Package: wnpp Severity: wishlist Subject: ITP: bbmap -- short read aligner and other bioinformatic tools Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: bbmap Version : 38.43 Upstream Author : Brian Bushnell, Jon Rood * URL : https

Bug#731599: Licensing of locfit

Hi Andy, once we had a discussion about the licensing restriction of locfit. I'd like to point your attention to a Github issue about this: https://github.com/chairmank/locfit/issues/1 While it seems that Steve M. Kim (user name chairmank on Github) has simply copied the code to Github that

Bug#925527: ITP: ragout -- Reference-Assisted Genome Ordering UTility

Package: wnpp Severity: wishlist Subject: ITP: ragout -- Reference-Assisted Genome Ordering UTility Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: ragout Version : 2.1.1 Upstream Author : Mikhail Kolmogorov and Joel Armstrong and * URL : https

Bug#925400: Processed: Bug#925400: ITP: q2cli -- Click-based command line interface for QIIME 2

Dear Liubov, On Sun, Mar 24, 2019 at 09:27:55PM +0100, Liubov Chuprikova wrote: > > Sorry for this mess! In the beginning, I set the bug owner to "Debian Med > Packaging Team " (just how I > did it earlier), but strangely it appeared truncated to "Debian Med > Packaging Team <". I was trying to

Bug#925417: ITP: kallisto -- near-optimal RNA-Seq quantification

Package: wnpp Severity: wishlist Subject: ITP: kallisto -- near-optimal RNA-Seq quantification Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: kallisto Version : 0.45.1 Upstream Author : Nicolas Bray, Harold Pimentel, Páll Melsted and Lior Pachter * URL

Bug#925400: Processed: Bug#925400: ITP: q2cli -- Click-based command line interface for QIIME 2

Dear Liubov, On Sun, Mar 24, 2019 at 12:30:03PM +, Debian Bug Tracking System wrote: > > owner 925400 Debian Med team > Bug #925400 [wnpp] ITP: q2cli -- Click-based command line interface for QIIME > 2 > Owner changed from Liubov Chuprikova to Debian Med > team . While I think there is

Bug#925158: ITP: emmax -- genetic mapping considering population structure

Package: wnpp Severity: wishlist Subject: ITP: emmax -- genetic mapping considering population structure Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: emmax Version : 0~beta.20100307 Upstream Author : Hyun Min Kang et. al. * URL : http

Bug#925133: ITP: r-cran-uroot -- GNU R unit root tests for seasonal time series

Package: wnpp Severity: wishlist Subject: ITP: r-cran-uroot -- GNU R unit root tests for seasonal time series Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-uroot Version : 2.0 Upstream Author : Javier López-de-Lacalle * URL : https

Bug#925131: ITP: r-cran-fracdiff -- GNU R fractionally differenced ARIMA aka ARFIMA(p,d,q) models

Package: wnpp Severity: wishlist Subject: ITP: r-cran-fracdiff -- GNU R fractionally differenced ARIMA aka ARFIMA(p,d,q) models Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-fracdiff Version : 1.4 Upstream Author : S original by Chris Fraley

Bug#924626: ITP: r-cran-shinycssloaders -- add CSS loading animations to 'shiny' outputs in GNU R

Package: wnpp Severity: wishlist Subject: ITP: r-cran-shinycssloaders -- add CSS loading animations to 'shiny' outputs in GNU R Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-shinycssloaders Version : 0.2.0 Upstream Author : Andras Sali * URL

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