Bug#924567: ITP: kraken2 -- taxonomic classification system using exact k-mer matches

Package: wnpp Severity: wishlist Subject: ITP: kraken2 -- taxonomic classification system using exact k-mer matches Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: kraken2 Version : 2.0.7~beta Upstream Author : Derrick Wood * URL : https

Bug#924294: Maintaining picosat in Debian Science team (Was: Bug#924294: ITP: python-pycosat -- Python bindings to picosat)

as maintainer. In case you might agree with this I'd volunteer to do the move and add you as Uploader. Kind regards Andreas. On Mon, Mar 11, 2019 at 07:24:25AM +0100, Andreas Tille wrote: > Package: wnpp > Severity: wishlist > > Subject: ITP: python-pycosat -- Python bindings to picos

Bug#924294: ITP: python-pycosat -- Python bindings to picosat

Package: wnpp Severity: wishlist Subject: ITP: python-pycosat -- Python bindings to picosat Package: wnpp Owner: <> Severity: wishlist * Package name: python-pycosat Version : 0.6.3 Upstream Author : Ilan Schnell, Continuum Analytics, Inc. * URL :

Bug#922759: ITP: kmerresistance -- correlates mapped genes with the predicted species of WGS samples

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: kmerresistance Version : 2.0+git20180205.26467e9 Upstream Author : , Philip Clausen, Technical University of Denmark * URL : https://bitbucket.org/genomicepidemiology/kmerresistance * License

Bug#922752: ITP: r-cran-deoptimr -- differential evolution optimization in pure R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-deoptimr Version : 1.0 Upstream Author : Eduardo L. T. Conceicao, Martin Maechler * URL : https://cran.r-project.org/package=DEoptimR * License : GPL-2+ Programming Lang: GNU R

Bug#922703: ITP: kma -- mapping genomic sequences to raw reads directly against redundant databases

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: kma Version : 1.1.7 Upstream Author : , Philip Clausen, Technical University of Denmark * URL : https://bitbucket.org/genomicepidemiology/kma * License : Apache-2.0 Programming Lang: C

Bug#922377: ITP: sibelia -- comparative genomics tool

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: sibelia Version : 3.0.7 Upstream Author : Saint-Petersburg Academic University * URL : http://bioinf.spbau.ru/sibelia * License : GPL-2 Programming Lang: C Description : comparative

Bug#888580: Bug#919413: cascade of FTBFS

On Thu, Feb 14, 2019 at 03:16:22PM +0100, Dominique Dumont wrote: > On Tuesday, 12 February 2019 16:54:12 CET Andreas Tille wrote: > > I'm > > not sure how to deal with the jquery.js one since this is potentially an > > issue with lots of dependencies - I remember discussions

Bug#888580: cascade of FTBFS

p://fam-tille.de >From b0a8a6a14c391fbc40489ab6df984435efaba1c4 Mon Sep 17 00:00:00 2001 From: Andreas Tille Date: Tue, 12 Feb 2019 16:02:57 +0100 Subject: [PATCH] Fix watch file --- debian/changelog | 4 debian/watch | 4 ++-- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/

Bug#810210: RFP: rethinkdb -- scalable document database with push support

Hi, I've commited a first rough packaging attemt for rethinkdb to Salsa[1]. It should be no means maintained by the Debian Med team but since it is a predependency of my final target augur[2] I simply started in the med team space on salsa. I'd be happy if any volunteer would pick up this work

Bug#921517: ITP: r-cran-cliapp -- create rich command line applications in GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-cliapp Version : 0.1.0 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=cliapp * License : MIT Programming Lang: GNU R Description : create rich

Bug#921516: ITP: r-cran-prettycode -- pretty print GNU R code in the terminal

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-prettycode Version : 1.0.2 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=prettycode * License : MIT Programming Lang: GNU R Description : pretty

Bug#920857: ITP: scoary -- pangenome-wide association studies

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: scoary Version : 1.6.16 Upstream Author : Ola Brynildsrud * URL : https://github.com/AdmiralenOla/Scoary * License : GPL-3.0 Programming Lang: Python Description : pangenome-wide

Bug#920443: ITP: salmid -- rapid Kmer based Salmonella identifier from sequence data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: salmid Version : 0.1.23 Upstream Author : Henk den Bakker * URL : https://github.com/hcdenbakker/SalmID * License : MIT Programming Lang: Python Description : rapid Kmer based

Bug#903345: Do we need python-seqcluster (Python2) or is python3-seqcluster sufficient

Hi Steffen, I was a bit scared that we have a non-installable package inside Debian and thought it would be a good idea to have python-seqcluster quickly. I realised that some of the (Build-)Depends are only available for Python3. Do we really need python-seqcluster for Python2 or can we just

Bug#919986: ITP: r-cran-askpass -- safe password entry for GNU R, Git, and SSH

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-askpass Version : 1.1 Upstream Author : Jeroen Ooms * URL : https://cran.r-project.org/package=askpass * License : MIT Programming Lang: GNU R Description : safe password

Bug#919984: ITP: r-cran-sys -- Powerful and Reliable Tools for Running System Commands in GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-sys Version : 2.1 Upstream Author : Jeroen Ooms, Gábor Csárdi * URL : https://cran.r-project.org/package=sys * License : MIT Programming Lang: GNU R Description : Powerful

Bug#919474: ITP: libxdf -- C++ library for loading XDF files

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libxdf Version : 0.98 Upstream Author : * URL : https://github.com/Yida-Lin/libxdf * License : GPL-3+ Programming Lang: C Description : C++ library for loading XDF files Libxdf

Bug#919468: ITP: r-cran-rcarb -- GNU R dose rate modelling of carbonate-rich samples

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rcarb Version : 0.1.2 Upstream Author : Sebastian Kreutzer, Roger P. Nathan, Barbara Mauz * URL : https://cran.r-project.org/package=RCarb * License : GPL-3 Programming Lang: GNU R

Bug#919465: ITP: r-cran-interp -- GNU R interpolation methods

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-interp Version : 1.0 Upstream Author : Albrecht Gebhardt, Roger Bivand, David Sinclair * URL : https://cran.r-project.org/package=interp * License : GPL-2+ Programming Lang: GNU R

Bug#919403: ITP: r-cran-rpact -- Confirmatory Adaptive Clinical Trial Design and Analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rpact Version : 1.0.0 Upstream Author : Gernot Wassmer, Friedrich Pahlke * URL : https://cran.r-project.org/package=rpact * License : GPL-3 Programming Lang: GNU R Description

Bug#705208: #705208,ITA: pylibtiff -- wrapper to the libtiff library to Python using ctypes

I'd be happy if you take pylibtiff, Andreas. On Sun, Dec 23, 2018 at 08:37:55PM +0100, Antonio Valentino wrote: > Hello, > I would like to adopt the pylibtiff [1] package because it is a > dependency of the new satpy that I'm going to package (#917110). > > The pylibtiff package would become

Bug#916427: ITP: r-cran-magick -- advanced graphics and image-processing in GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-magick Version : 2.0 Upstream Author : Jeroen Ooms * URL : https://cran.r-project.org/package=magick * License : MIT Programming Lang: GNU R Description : advanced graphics

Bug#915377: ITP: r-cran-generics -- GNU R common S3 generics not provided by base R methods

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-generics Version : 0.0.2 Upstream Author : Max Kuhn, Hadley Wickham, Davis Vaughan, RStudio * URL : https://cran.r-project.org/package=generics * License : GPL-2 Programming Lang

Bug#915092: ITP: python-msgpack-numpy -- serialize numpy arrays using msgpack

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: python-msgpack-numpy Version : 0.4.4 Upstream Author : , Lev E. Givon. * URL : https://github.com/lebedov/msgpack-numpy * License : BSD-3-clause Programming Lang: Python Description

Bug#915016: ITP: r-cran-fnn -- GNU R fast nearest neighbor search algorithms and applications

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-fnn Version : 1.1.2.1 Upstream Author : Alina Beygelzimer, * URL : https://cran.r-project.org/package=FNN * License : GPL-2+ Programming Lang: GNU R Description : GNU R fast

Bug#835854: spaCy: Create repository, merge bugs

Control: merge 894629 835854 I have created a git repository for spacy at https://salsa.debian.org/science-team/spacy since I might need python3-spacy for one of my target packages. Next step should probably be to package spaCy predependency https://github.com/explosion/cymem

Bug#914791: ITP: r-cran-rspectra -- GNU R solvers for large-scale eigenvalue and SVD problems

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rspectra Version : 0.13 Upstream Author : Yixuan Qiu * URL : https://cran.r-project.org/package=RSpectra * License : MPL-2.0 Programming Lang: GNU R Description : GNU R

Bug#914773: ITP: r-cran-rcppprogress -- interruptible progress bar for C++ in GNU R packages

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rcppprogress Version : 0.4.1 Upstream Author : Karl Forner * URL : https://cran.r-project.org/package=RcppProgress * License : GPL-3+ Programming Lang: GNU R Description

Bug#914772: ITP: r-cran-rcppannoy -- Rcpp bindings for Annoy (approximate nearest neighbors)

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rcppannoy Version : 0.0.11 Upstream Author : Dirk Eddelbuettel * URL : https://cran.r-project.org/package=RcppAnnoy * License : GPL-2+ Programming Lang: GNU R Description

Bug#914710: ITP: r-cran-rtsne -- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-rtsne Version : 0.15 Upstream Author : Jesse Krijthe, * URL : https://cran.r-project.org/package=Rtsne * License : BSD-3-clause Programming Lang: GNU R Description : GNU R T

Bug#911508: r-cran-shinyfiles_0.7.1-1_amd64.changes REJECTED

On Fri, Nov 09, 2018 at 11:00:09PM +, Thorsten Alteholz wrote: > your CC-BY-3.0-entry in debian/copyright doesn't really look like > the correct license text ... Fixed in new upload. Thanks for checking Andreas. -- http://fam-tille.de

Bug#912209: ITP: r-cran-ncmeta -- GNU R Straightforward 'NetCDF' Metadata

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-ncmeta Version : 0.0.3 Upstream Author : Michael Sumner, * URL : https://cran.r-project.org/package=ncmeta * License : GPL-3 Programming Lang: GNU R Description : GNU R

Bug#911964: ITP: plasmidseeker -- identification of known plasmids from whole-genome sequencing reads

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: plasmidseeker Version : 1.0 Upstream Author : Bioinfo, IMCB, UT * URL : https://github.com/bioinfo-ut/PlasmidSeeker * License : BSD-3-clause Programming Lang: Perl Description

Bug#911843: ITP: r-cran-geosphere -- GNU R Spherical Trigonometry

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-geosphere Version : 1.5 Upstream Author : Robert J. Hijmans, * URL : https://cran.r-project.org/package=geosphere * License : GPL-3+ Programming Lang: GNU R Description : GNU

Bug#911839: ITP: r-cran-lwgeom -- GNU R bindings to selected 'liblwgeom' functions for simple features

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-lwgeom Version : 0.1 Upstream Author : Edzer Pebesma, * URL : https://cran.r-project.org/package=lwgeom * License : GPL-2 Programming Lang: GNU R Description : GNU R bindings

Bug#911508: ITP: r-cran-shinyfiles -- GNU R server-side file system viewer for shiny

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-shinyfiles Version : 0.7.1 Upstream Author : Thomas Lin Pedersen, Vincent Nijs, Eric Nantz * URL : https://cran.r-project.org/package=shinyFiles * License : GPL-2+ Programming Lang

Bug#911506: ITP: r-cran-gsa -- GNU R gene set analysis

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-gsa Version : 1.03 Upstream Author : Brad Efron and R. Tibshirani * URL : https://cran.r-project.org/package=GSA * License : LGPL Programming Lang: GNU R Description : GNU R

Bug#911219: ITP: r-cran-plumber -- API Generator for GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-plumber Version : 0.4.6 Upstream Author : Trestle Technology, LLC, * URL : https://cran.r-project.org/package=plumber * License : MIT Programming Lang: GNU R Description : API

Bug#910749: ITP: r-cran-iso -- GNU R functions to perform isotonic regression

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-iso Version : 0.0 Upstream Author : Rolf Turner * URL : https://cran.r-project.org/package=Iso * License : GPL-2+ Programming Lang: GNU R Description : GNU R functions

Bug#910516: ITP: r-cran-mlr -- Machine learning in GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-mlr Version : 2.13 Upstream Author : Bernd Bischl, * URL : https://cran.r-project.org/package=mlr * License : BSD-2-clause Programming Lang: GNU R Description : Machine

Bug#910515: ITP: r-cran-paramhelpers -- GNU R helpers for parameters in black-box optimization and tuning

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-paramhelpers Version : 1.11 Upstream Author : Bernd Bischl, * URL : https://cran.r-project.org/package=ParamHelpers * License : BSD-2-clause Programming Lang: GNU R Description

Bug#910514: ITP: r-cran-irace -- GNU R iterated racing for automatic algorithm configuration

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-irace Version : 3.1 Upstream Author : Manuel López-Ibáñez * URL : https://cran.r-project.org/package=irace * License : GPL-2+ Programming Lang: GNU R Description : GNU R

Bug#910510: ITP: r-cran-ggally -- GNU R extension to r-cran-ggplot2

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-ggally Version : 1.4.0 Upstream Author : Barret Schloerke (author for ggpairs, ggduo, ggnostic, ggts, * URL : https://cran.r-project.org/package=GGally * License : GPL-2

Bug#910509: ITP: r-cran-emoa -- GNU R evolutionary multiobjective optimization algorithms

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-emoa Version : 0.5 Upstream Author : Olaf Mersmann * URL : https://cran.r-project.org/package=emoa * License : GPL-2 Programming Lang: GNU R Description : GNU R evolutionary

Bug#910487: ITP: r-cran-eaf -- GNU R plots of the empirical attainment function

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-eaf Version : 1.8 Upstream Author : Manuel López-Ibáñez * URL : https://cran.r-project.org/package=eaf * License : GPL-2+ Programming Lang: GNU R Description : GNU R plots

Bug#910461: ITP: r-cran-paramhelpers -- GNU R helpers for parameters in black-box optimization and tuning

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-paramhelpers Version : 1.11 Upstream Author : Bernd Bischl, * URL : https://cran.r-project.org/package=ParamHelpers * License : BSD-2-clause Programming Lang: GNU R Description

Bug#910460: ITP: r-cran-parallelmap -- GNU R unified interface to parallelization back-ends

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-parallelmap Version : 1.3 Upstream Author : Bernd Bischl , Michel Lang * URL : https://cran.r-project.org/package=parallelMap * License : BSD-2-clause Programming Lang: GNU R

Bug#910357: ITP: segemehl -- short read mapping with gaps

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: segemehl Version : 0.3 Upstream Author : Bioinformatik Leipzig * URL : http://www.bioinf.uni-leipzig.de/Software/segemehl/ * License : GPL-3+ Programming Lang: C Description : short

Bug#898704: r-cran-stanheaders_2.17.2-1_amd64.changes REJECTED

Hi Thorsten, > at least the MPL is missing in your debian/copyright. This was also fixed two days ago but I realised that I did not responded with a hint about the fix. It would help if this package would be accepted since r-cran-rstan is broken without the package. Thanks for your work as

Bug#908703: ITP: r-cran-purrrlyr -- GNU R Tools at the Intersection of 'purrr' and 'dplyr'

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-purrrlyr Version : 0.0.3 Upstream Author : Lionel Henry, Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=purrrlyr * License : GPL-3 Programming Lang: GNU R

Bug#908466: ITP: r-cran-xslt -- extensible style-sheet language transformations for GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-xslt Version : 1.3 Upstream Author : Jeroen Ooms * URL : https://cran.r-project.org/package=xslt * License : GPL-2+ Programming Lang: GNU R Description : extensible style

Bug#898513: r-cran-rdflib_0.1.0+dfsg-1_amd64.changes REJECTED

Hi Thorsten, On Sun, Sep 09, 2018 at 05:00:10PM +, Thorsten Alteholz wrote: > the TDM license does not seem to be compatible with DFSG. It took me some time to find out what you mean. Finally I've found: inst/extdata/vita.json:"license":

Bug#908278: ITP: libimagequant -- palette quantization library (development files)

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libimagequant Version : 2.12.1 Upstream Author : Kornel Lesiński * URL : https://github.com/ImageOptim/libimagequant * License : GPL-3.0+ Programming Lang: C Description : palette

Bug#908069: ITP: cct -- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: cct Version : 20170919 Upstream Author : Paul Stothard , * URL : http://stothard.afns.ualberta.ca/downloads/CCT/ * License : GPL-2+ Programming Lang: Perl, Python, sh Description

Bug#907283: ITP: python-asteval -- minimalistic evaluator of Python 3 expression using ast module

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: python-asteval Version : 0.9.12 Upstream Author : Matthew Newville * URL : https://github.com/newville/asteval * License : MIT Programming Lang: Python Description : minimalistic

Bug#907244: ITP: python-depinfo -- retrieve and print Python 3 package dependencies

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: python-depinfo Version : 1.4.0 Upstream Author : Moritz E. Beber * URL : https://github.com/Midnighter/dependency-info * License : Apache-2.0 Programming Lang: Python Description

Bug#907241: ITP: python-pipdeptree -- display dependency tree of the installed Python 3 packages

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: python-pipdeptree Version : 0.13.0 Upstream Author : Vineet Naik * URL : https://github.com/naiquevin/pipdeptree * License : MIT Programming Lang: Python Description : display

Bug#907044: ITP: r-cran-satellite -- GNU R handling and manipulating remote sensing data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-satellite Version : 1.0.1 Upstream Author : Thomas Nauss, Hanna Meyer, Tim Appelhans, Florian Detsch * URL : https://cran.r-project.org/package=satellite * License : GPL-3

Bug#907043: ITP: r-cran-svglite -- GNU R 'SVG' graphics device

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-svglite Version : 1.2.1 Upstream Author : Hadley Wickham, Lionel Henry, T Jake Luciani, * URL : https://cran.r-project.org/package=svglite * License : GPL-2+ Programming Lang: GNU R

Bug#907027: ITP: r-cran-stars -- scalable, spatiotemporal tidy arrays for GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-stars Version : 0.1 Upstream Author : Edzer Pebesma, Michael Sumner, Etienne Racine, Adriano Fantini * URL : https://cran.r-project.org/package=stars * License : Apache-2.0

Bug#907025: ITP: r-cran-metrics -- GNU R evaluation metrics for machine learning

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-metrics Version : 0.1.4 Upstream Author : Ben Hamner, Michael Frasco, Erin LeDell * URL : https://cran.r-project.org/package=Metrics * License : BSD-3-clause Programming Lang: GNU R

Bug#907024: ITP: r-cran-gdtools -- GNU R utilities for graphical rendering

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-gdtools Version : 0.1.7 Upstream Author : David Gohel, Hadley Wickham, Lionel Henry, Jeroen Ooms, * URL : https://cran.r-project.org/package=gdtools * License : GPL-3 Programming

Bug#907014: ITP: r-cran-deoptimr -- Differential Evolution Optimization in Pure R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-deoptimr Version : 1.0 Upstream Author : Eduardo L. T. Conceicao, Martin Maechler * URL : https://cran.r-project.org/package=DEoptimR * License : GPL-2+ Programming Lang: GNU R

Bug#906640: ITP: r-cran-ps -- GNU R list, query, manipulate system processes

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-ps Version : 1.1.0 Upstream Author : Jay Loden, Dave Daeschler, Giampaolo Rodola, Gábor Csárdi, RStudio * URL : https://cran.r-project.org/package=ps * License : BSD-3-clause

Bug#906332: ITP: minimap2 -- versatile pairwise aligner for genomic and spliced nucleotide sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: minimap2 Version : 2.12 Upstream Author : Copyright: © 2017-2018 Broad Institute * URL : https://github.com/lh3/minimap2 * License : MIT Programming Lang: C Description : versatile

Bug#906218: ITP: python-hdmedians -- high-dimensional medians in Python

On Wed, Aug 15, 2018 at 05:49:47PM +0200, Andrej Shadura wrote: > On 15 August 2018 at 17:00, Andreas Tille wrote: > > This package currently has implementations of medoid and geometric > > median with support for missing data using NaN. > > . > > This is the packa

Bug#906218: ITP: python-hdmedians -- high-dimensional medians in Python

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: python-hdmedians Version : 0.13~git20171027.8e0e9e3 Upstream Author : Dale Roberts * URL : https://github.com/daleroberts/hdmedians * License : Apache-2.0 Programming Lang: Python

Bug#906203: ITP: r-cran-fs -- GNU R cross-platform file system operations

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-fs Version : 1.2.5 Upstream Author : Jim Hester, Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=fs * License : GPL-3 Programming Lang: GNU R Description

Bug#905646: ITP: r-cran-heatmaply -- GNU R interactive cluster heat maps using 'plotly'

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-heatmaply Version : 0.15.2 Upstream Author : Tal Galili, Jonathan Sidi, Alan O'Callaghan, * URL : https://cran.r-project.org/package=heatmaply * License : GPL-2 Programming Lang

Bug#905644: ITP: r-cran-seriation -- GNU R infrastructure for ordering objects using seriation

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-seriation Version : 1.2 Upstream Author : Michael Hahsler, Christian Buchta, Kurt Hornik, * URL : https://cran.r-project.org/package=seriation * License : GPL-3 Programming Lang

Bug#905642: ITP: r-cran-dendextend -- Extending 'dendrogram' Functionality in GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-dendextend Version : 1.8.0 Upstream Author : Tal Galili, The R Core Team, Uwe Ligges, * URL : https://cran.r-project.org/package=dendextend * License : GPL-2 Programming Lang: GNU R

Bug#905641: ITP: r-cran-webshot -- GNU R take screenshots of web pages

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-webshot Version : 0.5.0 Upstream Author : Winston Chang, Yihui Xie, Francois Guillem, * URL : https://cran.r-project.org/package=webshot * License : GPL-2 Programming Lang: GNU R

Bug#905640: ITP: r-cran-tsp -- GNU R traveling salesperson problem (TSP)

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-tsp Version : 1.1 Upstream Author : Michael Hahsler, Kurt Hornik * URL : https://cran.r-project.org/package=TSP * License : GPL-3 Programming Lang: GNU R Description : GNU R

Bug#905638: ITP: r-cran-qap -- GNU R heuristics for the quadratic assignment problem (QAP)

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-qap Version : 0.1 Upstream Author : Michael Hahsler, Franz Rendl * URL : https://cran.r-project.org/package=qap * License : GPL-3 Programming Lang: GNU R Description : GNU R

Bug#905632: ITP: r-cran-gclus -- GNU R clustering graphics

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-gclus Version : 1.3.1 Upstream Author : Catherine Hurley * URL : https://cran.r-project.org/package=gclus * License : GPL-2+ Programming Lang: GNU R Description : GNU R

Bug#905631: ITP: r-cran-fpc -- GNU R flexible procedures for clustering

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-fpc Version : 2.1 Upstream Author : Christian Hennig * URL : https://cran.r-project.org/package=fpc * License : GPL-2 Programming Lang: GNU R Description : GNU R flexible

Bug#905621: ITP: r-cran-trimcluster -- GNU R cluster analysis with trimming

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-trimcluster Version : 0.1 Upstream Author : Christian Hennig * URL : https://cran.r-project.org/package=trimcluster * License : GPL-2 Programming Lang: GNU R Description

Bug#905620: ITP: r-cran-prabclus -- GNU R clustering of presence-absence, abundance and multilocus genetic data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-prabclus Version : 2.2 Upstream Author : Christian Hennig , * URL : https://cran.r-project.org/package=prabclus * License : GPL-2 Programming Lang: GNU R Description : GNU R

Bug#905619: ITP: r-cran-flexmix -- GNU R flexible mixture modeling

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-flexmix Version : 2.3 Upstream Author : Bettina Gruen, Friedrich Leisch, Deepayan Sarkar, * URL : https://cran.r-project.org/package=flexmix * License : GPL-2+ Programming Lang: GNU

Bug#902124: Sponsoring of python-ulmo

Hi Kurt, thanks for preparing python-ulmo. I recived the request for sponsering via the SoB wiki[1]. To make sure you will fully understand the meaning of adding a package to a task I'd like to the latest commit[2] which really generates the URL you tried to point to in the line of the SoB

Bug#902124: RFS: ulmo -- Clean, simple and fast Python access to public hydrology & climatology data

Hi, On Sun, Jul 29, 2018 at 04:47:27AM -0500, Kurt Kremitzki wrote: > This package is now ready for review at > https://salsa.debian.org/science-team/python-ulmo. > > On Fri, 22 Jun 2018 10:32:56 -0500 Kurt Kremitzki > wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Kurt Kremitzki >

Bug#904989: ITP: r-cran-pkgload -- simulate GNU R package installation and attach

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-pkgload Version : 1.0.0 Upstream Author : Hadley Wickham, Jim Hester, Winston Chang, RStudio * URL : https://cran.r-project.org/package=pkgload * License : GPL-3 Programming Lang

Bug#904987: ITP: r-cran-pkgbuild -- find tools needed to build GNU R packages

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-pkgbuild Version : 1.0.0 Upstream Author : Hadley Wickham, Jim Hester, RStudio * URL : https://cran.r-project.org/package=pkgbuild * License : GPL-3 Programming Lang: GNU R

Bug#904984: ITP: r-cran-callr -- Call GNU R from GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-callr Version : 2.0.4 Upstream Author : Gábor Csárdi, Winston Chang, RStudio, Mango Solutions * URL : https://cran.r-project.org/package=callr * License : MIT Programming Lang: GNU

Bug#904982: ITP: r-cran-processx -- GNU R execute and control system processes

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-processx Version : 3.1.0 Upstream Author : Gábor Csárdi, Winston Chang, RStudio, Mango Solutions * URL : https://cran.r-project.org/package=processx * License : MIT Programming Lang

Bug#904963: ITP: r-cran-extradistr -- additional univariate and multivariate distributions for GNU R

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-extradistr Version : 1.8.9 Upstream Author : Tymoteusz Wolodzko * URL : https://cran.r-project.org/package=extraDistr * License : GPL-2 Programming Lang: GNU R Description

Bug#903911: ITP: pilon-non-free -- automated genome assembly improvement and variant detection tool

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: pilon-non-free Version : 1.22 Upstream Author : Copyright: Copyright 2012-2017 Broad Institute, Inc. * URL : https://github.com/broadinstitute/pilon/wiki * License : GPL-2 Programming Lang

Bug#903884: ITP: r-cran-fansi -- GNU R ANSI control sequence aware string functions

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-fansi Version : 0.2.3 Upstream Author : Brodie Gaslam, * URL : https://cran.r-project.org/package=fansi * License : GPL-2+ Programming Lang: GNU R Description : GNU R ANSI

Bug#850587: Sponsoring of cohomcalg

> > I believed everything is fixed now. I pushed a few more little updates to > git just now. If you could sponsor again, that would be great! Done. Thanks for your work on this Andreas. -- http://fam-tille.de

Bug#850587: Sponsoring of cohomcalg

Hi Doug, I realised that this package is open on the SoB page and has not yet hit Debian. Please keep me updated about the status - I can upload a new version if needed. Sorry if I missed some information and feel free to ping me in case you need further help (with this or other packages of

Bug#903687: ITP: r-cran-mitools -- GNU R tools for multiple imputation of missing data

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-mitools Version : 2.3 Upstream Author : Thomas Lumley * URL : https://cran.r-project.org/package=mitools * License : GPL-2 Programming Lang: GNU R Description : GNU R tools

Bug#903686: ITP: r-cran-kmi -- GNU R Kaplan-Meier Multiple Imputation

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-kmi Version : 0.5.4 Upstream Author : Arthur Allignol * URL : https://cran.r-project.org/package=kmi * License : GPL-2+ Programming Lang: GNU R Description : GNU R Kaplan

Bug#903542: ITP: r-cran-xfun -- miscellaneous GNU R functions by 'Yihui Xie'

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-xfun Version : 0.3 Upstream Author : Yihui Xie, Daijiang Li * URL : https://cran.r-project.org/package=xfun * License : MIT Programming Lang: GNU R Description : miscellaneous

Bug#902960: SweeD - was Re: omegaMap

Hi Steffen, On Wed, Jul 04, 2018 at 01:15:17AM +0200, Steffen Möller wrote: > It happened that I was reading a review on software that is about what > omegaMap is about if I am not erroneous. The authors did not reference > omegaMap, but compared the Open Source tools SweeD, SweepFinder, >

Bug#858947: Processed: retitle to RFP: plink2 -- whole-genome association analysis toolset

Hi, I wonder whether plink2[1] will simply replace plink1.9 and this RFP could be closed. [1] https://www.cog-genomics.org/plink/2.0/ -- http://fam-tille.de

Bug#901724: ITP: r-cran-pls -- GNU R partial least squares and principal component regression

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: r-cran-pls Version : 2.6 Upstream Author : Björn-Helge Mevik, Ron Wehrens and Kristian Hovde Liland * URL : https://cran.r-project.org/package=pls * License : GPL-2 Programming Lang: GNU R

Bug#901226: ITP: rampler -- module for sampling genomic sequences

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: rampler Version : 1.1.0 Upstream Author : Robert Vaser * URL : https://github.com/rvaser/rampler * License : MIT Programming Lang: C++ Description : module for sampling genomic

Bug#901207: ITP: libthread-pool -- C++ thread pool library

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libthread-pool Version : 1.0.0 Upstream Author : Robert Vaser * URL : https://github.com/rvaser/libthread-pool * License : MIT Programming Lang: C++ Description : C++ thread pool

Bug#901184: ITP: libedlib -- library for sequence alignment using edit distance

Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libedlib Version : 1.2.3 Upstream Author : Martin Šošić * URL : https://github.com/Martinsos/edlib * License : MIT Programming Lang: C Description : library for sequence alignment

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