Package: wnpp Severity: wishlist Subject: ITP: bifrost -- parallel construction, indexing and querying of de Bruijn graphs Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : bifrost Version : 1.3.0 Upstream Author : Pall Melsted, Guillaume Holley * URL : https://github.com/pmelsted/bifrost * License : BSD-2-clause Programming Lang: C Description : parallel construction, indexing and querying of de Bruijn graphs Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in. . * Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/bifrost