Hi Justina,
Can you send the following:
- The recon-all.log file for the subject you are trying to run through
segmentHA_T1.sh
- The output from running the `env` command
- The command you are using to invoke segmentHA_T1.sh
My guess is that the SUBJECTS_DIR environment variable isn't set
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Hi Paul,
This seems to have done the trick. Thank you for guiding me through this
process, I really appreciate all your help.
My last question refers to this comment when trying to run the
segmentHA_T1.sh command:
Cannot find wmparc.mgz or norm.mgz
