External Email - Use Caution Dear Freesurfer,
Does my T1 MPRAGE need to be in a particular orientation prior to running recon-all? Meaning should I use mri_convert to change to RAS orientation to avoid any L/R confusion with the output measures. For instance, mri_info says the orientation: MPRAGE = LPS orig.mgz = LIA T1.mgz = LIA I'm confused because if you bring up an image in freeview, say the T1.mgz, it uses the RAS coordinate system. Thanks, Abid
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