[Freesurfer] Roi parcellation

2017-01-18 Thread Aya Kabbara
Thank you.. Actually, I realized that using tksurfer I can do a manual parcellation. However, I need an automatic parcellation. Is there a way? Get Outlook for Android ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Anatomical ROI parcellation

2017-01-17 Thread Aya Kabbara
Dear Freesurfer team, I am wondering is there a way using tksurfer to edit a given atlas (for example: destrieux atlas). I would like to parcellate the superior temporal region into three regions . Is there a way to do that? Thank you Aya ___

[Freesurfer] dimensions of the segmented MRI

2016-12-14 Thread Aya Kabbara
Dear freesurfer team, Do we have the option when using "recon-all" command to predefine the dimensions of the segmented MRI? (for example 145*174*145 with 1.25 mm). Thank you a lot, Aya ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Question

2016-11-03 Thread Aya Kabbara
Dear FreeSurfer team, First, I would like to thank you for your interesting and very helpful tool. Actually, I'm beginner in using Freesurfer. I have an individual anatomy (.nii) for each subject . After reconstructing the surface using free surfer, I would like to link the surface to the