[Freesurfer] cross sectional hippocampal edits

2018-09-17 Thread Rebecca Ray
. How do I correct hippocampal overestimation? I would love your help. Best, Rebecca Ray ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended

[Freesurfer] longitudinal hippocampal aseg editing

2018-09-07 Thread Rebecca Ray
edits to subcortical structures need to be done in the -long stage. (see here: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits ) Best, Martin On Thu, 2018-09-06 at 14:37 -0700, Rebecca Ray wrote: >* External Email - Use Caution *>* HELP *>* -- Forwarde

[Freesurfer] Fwd: longitudinal hippocampal aseg editing

2018-09-06 Thread Rebecca Ray
External Email - Use Caution HELP -- Forwarded message -- From: Rebecca Ray Date: Thu, Sep 6, 2018 at 12:05 PM Subject: longitudinal hippocampal aseg editing To: freesurfer@nmr.mgh.harvard.edu I have 2 time points on 60 subjects with most being in some form

[Freesurfer] longitudinal hippocampal aseg editing

2018-09-06 Thread Rebecca Ray
External Email - Use Caution I have 2 time points on 60 subjects with most being in some form of AD. There are considerable differences in hippocampal volume between time points. I edited the raw images before making the template. I then had to edit the aseg template image and

[Freesurfer] N3 kernel decrease

2018-05-07 Thread Rebecca Ray
External Email - Use Caution Hello, I am working on T1 images from multi-sites. One site in particular is producing T1s that have small to large areas of temporal cortex being excluded from segmentation. It seems that there may be an issue with inhomogeneity of the bias field