Re: [Freesurfer] recon-all ends in 4 seconds without error!!

5DVJ6nRs2V4QwQZXulUxg2M2_GqOROHWi-TB9KyiBcPWmc4JGUIhhIGtJ6o3uCFNb6kCnhApPYc-Y4O-LPm1SacVHfhu2Ed2QzkGUtwgxu8u5MqaBpajJz7zSqpwpiURhxidPnsAAQhOMyMO5-qsvqwIExnTA9maNlw/http%3A%2F%2Fwww.jeiglesias.com > > On Aug 25, 2021, at 12:04, vin rasa wrote: > > External Email - Use Caution > > Dear Free

[Freesurfer] recon-all ends in 4 seconds without error!!

External Email - Use Caution Dear Freesurfer Experts, Greetings! I am trying to run freesurfer on Synthetic T1 data (see in snapshot: *''Simulated T1 image', last sentence in the snapshot*') from Brainweb (

[Freesurfer] Extract ThickAvg ThickStd from rh/lh.aparc.stats of a specific structure for group of subjects

External Email - Use Caution Dear Freesurfer experts, Is there a shortcut to extract mean thickness(ThickAvg) and std (ThickStd) from rh/lh.aparc.stats for let's say 4 structures only. I found aparcstats2table command, which seems to extract all the segmented regions.

Re: [Freesurfer] Error running recon-all

External Email - Use Caution Please also find recon-all.log file. Thanks! On Thu, Jul 25, 2019 at 6:50 AM vin rasa wrote: > Dear Freesurfer experts, > Greetings! > > > In the first minute of recon-all, we are getting following error: > > mghRead(/media/r

[Freesurfer] Error running recon-all

External Email - Use Caution Dear Freesurfer experts, Greetings! In the first minute of recon-all, we are getting following error: mghRead(/media/results/mri/rawavg.mgz): could not read 262144 bytes at slice 0 T1 data type is int16, data type 4 (looked using fslinfo) Looking

[Freesurfer] mni152reg ends with (ERROR: flirt)

External Email - Use Caution Dear Freesurfer Experts! The idea is to transform freesurfer output in to the MNI 1mm space using following command: mni152reg --s subject_id --1 But mni152reg crashes with following error: flirt.newdefault.20080811.sch terminate called after

[Freesurfer] fs on GPU? Segmentation fault error!

External Email - Use Caution Freesurfer Wizards, Any thoughts on this? Thanks in advance ## *I renamed:* /usr/local/cuda-8.0/lib64$ sudo cp libcudart.so.8.0 libcudart.so.5.0 *in the next step:* recon-all -i $sub_dir/$i/"$i".nii -all -sd $output_dir $i -use-gpu . . Testing for

[Freesurfer] Freeview Crashes!!

Dear FS Experts, While using updated Freeview in ubuntu 16.04, I reproducibly get two following errors: 1st Crash (While selecting color for the volume): Volume - Colormap -Lookup Table option: 0�freeview.bin: symbol lookup error: freeview.bin: undefined symbol: _ZN6QMutex12lockInternalEv 2nd