Re: [Freesurfer] Extreme non-uniformity artifact

2017-03-08 Thread Andrew D. Davis
Hi Bruce and all, Thanks for the suggestion on scaling -- it would be nice if it were consistent, but it varies quite a lot from scan to scan. At the most, about 30 of the top slices are affected, but often the number of affected slices is fewer, and sometimes the spatial extent of the artifact

Re: [Freesurfer] Extreme non-uniformity artifact

2017-03-07 Thread Bruce Fischl
Hi Andrew wow, that's pretty strange. The only thing I can think of that might recover this is to put pairs of control points in the white matter, one on either side of the boundary of your artifact. Or maybe it always affects the same slices and you can scale them up? I guess it depends on