[Freesurfer] Smart concatenation in selxavg3-sess?

2012-03-07 Thread Alex Kell
Hi Freesurfers, The selxavg3-sess's help and Freesurfer documentation say that selxavg3-sess creates a design matrix for each run, fits the glm for each run, and then combines the runs together to give summary data for the subject's whole session. Some of the fsfast 5 slides say it uses smart

Re: [Freesurfer] Smart concatenation in selxavg3-sess?

2012-03-07 Thread Douglas Greve
The runs are brought into alignment during preprocessing. The default is to motion correct each run to the middle time point of the run, then sample the entire run to the common spaces (left hemi fsaverage, right hemi, or the MNI305 for subcortical volume). Once this is done, all the runs are