[Freesurfer] segfault during rfx with mri_glmfit

2013-05-07 Thread Alex Kell
hi freesurfers, i am running into a segfault whenever i try to use mri_glmfit to run a random effects analysis. (this is in the volume, not on the surface.) here's my call: mri_glmfit \ --y $ces_fpath \ --X $design_mat_fpath \ --C $c1_fpath \ --C $c2_fpath \ --C $c3_fpath \ --mask

Re: [Freesurfer] segfault during rfx with mri_glmfit

2013-05-07 Thread Douglas N Greve
Hi Alex, is it actually running out of memory? Otherwise, nothing comes to mind. If you tar up all the inputs and drop them at our file drop I'll take a look. doug On 05/07/2013 10:24 AM, Alex Kell wrote: hi freesurfers, i am running into a segfault whenever i try to use mri_glmfit to run a

Re: [Freesurfer] segfault during rfx with mri_glmfit

2013-05-07 Thread Alex Kell
hi doug, thanks for the quick response. i got it to work -- apparently the 5.1.x developmental version i was using had some problem in mri_glmfit. when i switched to the stable 5.1 version (build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0) it ran perfectly smoothly.