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Yin Huai commented on SPARK-15513: ---------------------------------- I am closing this jira since the fix has been released with 2.7.2. > Bzip2Factory in Hadoop 2.7.1 is not thread safe > ----------------------------------------------- > > Key: SPARK-15513 > URL: https://issues.apache.org/jira/browse/SPARK-15513 > Project: Spark > Issue Type: Bug > Components: Spark Core > Environment: Hadoop 2.7.1 > Reporter: Yin Huai > > This is caused by https://issues.apache.org/jira/browse/HADOOP-12191. When we > are loading the native bzip2 lib by one thread, other threads think that > native bzip2 lib is not available and then throws exceptions. > {code} > org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in > stage 6.0 failed 1 times, most recent failure: Lost task 0.0 in stage 6.0 > (TID 37, localhost): java.lang.UnsupportedOperationException > at > org.apache.hadoop.io.compress.bzip2.BZip2DummyCompressor.finished(BZip2DummyCompressor.java:48) > at > org.apache.hadoop.io.compress.CompressorStream.write(CompressorStream.java:65) > at java.io.DataOutputStream.write(DataOutputStream.java:107) > at > org.apache.hadoop.mapred.TextOutputFormat$LineRecordWriter.writeObject(TextOutputFormat.java:81) > at > org.apache.hadoop.mapred.TextOutputFormat$LineRecordWriter.write(TextOutputFormat.java:102) > at org.apache.spark.SparkHadoopWriter.write(SparkHadoopWriter.scala:95) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply$mcV$sp(PairRDDFunctions.scala:1205) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply(PairRDDFunctions.scala:1203) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply(PairRDDFunctions.scala:1203) > at > org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1278) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13.apply(PairRDDFunctions.scala:1211) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13.apply(PairRDDFunctions.scala:1190) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70) > at org.apache.spark.scheduler.Task.run(Task.scala:85) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > Suppressed: java.lang.UnsupportedOperationException > at > org.apache.hadoop.io.compress.bzip2.BZip2DummyCompressor.finished(BZip2DummyCompressor.java:48) > at > org.apache.hadoop.io.compress.CompressorStream.finish(CompressorStream.java:89) > at > org.apache.hadoop.io.compress.CompressorStream.close(CompressorStream.java:106) > at java.io.FilterOutputStream.close(FilterOutputStream.java:159) > at > org.apache.hadoop.mapred.TextOutputFormat$LineRecordWriter.close(TextOutputFormat.java:108) > at > org.apache.spark.SparkHadoopWriter.close(SparkHadoopWriter.scala:102) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$8.apply$mcV$sp(PairRDDFunctions.scala:1211) > at > org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1296) > ... 8 more > Driver stacktrace: > at > org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1450) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1438) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1437) > at > scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) > at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47) > at > org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1437) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) > at scala.Option.foreach(Option.scala:236) > at > org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1659) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1618) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1607) > at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) > at > org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632) > at org.apache.spark.SparkContext.runJob(SparkContext.scala:1863) > at org.apache.spark.SparkContext.runJob(SparkContext.scala:1876) > at org.apache.spark.SparkContext.runJob(SparkContext.scala:1896) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1.apply$mcV$sp(PairRDDFunctions.scala:1219) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1.apply(PairRDDFunctions.scala:1161) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1.apply(PairRDDFunctions.scala:1161) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) > at org.apache.spark.rdd.RDD.withScope(RDD.scala:357) > at > org.apache.spark.rdd.PairRDDFunctions.saveAsHadoopDataset(PairRDDFunctions.scala:1161) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$4.apply$mcV$sp(PairRDDFunctions.scala:1064) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$4.apply(PairRDDFunctions.scala:1030) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$4.apply(PairRDDFunctions.scala:1030) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) > at org.apache.spark.rdd.RDD.withScope(RDD.scala:357) > at > org.apache.spark.rdd.PairRDDFunctions.saveAsHadoopFile(PairRDDFunctions.scala:1030) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$3.apply$mcV$sp(PairRDDFunctions.scala:1011) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$3.apply(PairRDDFunctions.scala:1011) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$3.apply(PairRDDFunctions.scala:1011) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) > at org.apache.spark.rdd.RDD.withScope(RDD.scala:357) > at > org.apache.spark.rdd.PairRDDFunctions.saveAsHadoopFile(PairRDDFunctions.scala:1010) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$2.apply$mcV$sp(PairRDDFunctions.scala:968) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$2.apply(PairRDDFunctions.scala:966) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopFile$2.apply(PairRDDFunctions.scala:966) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) > at org.apache.spark.rdd.RDD.withScope(RDD.scala:357) > at > org.apache.spark.rdd.PairRDDFunctions.saveAsHadoopFile(PairRDDFunctions.scala:966) > at > org.apache.spark.rdd.RDD$$anonfun$saveAsTextFile$2.apply$mcV$sp(RDD.scala:1448) > at > org.apache.spark.rdd.RDD$$anonfun$saveAsTextFile$2.apply(RDD.scala:1436) > at > org.apache.spark.rdd.RDD$$anonfun$saveAsTextFile$2.apply(RDD.scala:1436) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) > at > org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) > at org.apache.spark.rdd.RDD.withScope(RDD.scala:357) > at org.apache.spark.rdd.RDD.saveAsTextFile(RDD.scala:1436) > Caused by: java.lang.UnsupportedOperationException > at > org.apache.hadoop.io.compress.bzip2.BZip2DummyCompressor.finished(BZip2DummyCompressor.java:48) > at > org.apache.hadoop.io.compress.CompressorStream.write(CompressorStream.java:65) > at java.io.DataOutputStream.write(DataOutputStream.java:107) > at > org.apache.hadoop.mapred.TextOutputFormat$LineRecordWriter.writeObject(TextOutputFormat.java:81) > at > org.apache.hadoop.mapred.TextOutputFormat$LineRecordWriter.write(TextOutputFormat.java:102) > at org.apache.spark.SparkHadoopWriter.write(SparkHadoopWriter.scala:95) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply$mcV$sp(PairRDDFunctions.scala:1205) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply(PairRDDFunctions.scala:1203) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13$$anonfun$apply$7.apply(PairRDDFunctions.scala:1203) > at > org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1278) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13.apply(PairRDDFunctions.scala:1211) > at > org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsHadoopDataset$1$$anonfun$13.apply(PairRDDFunctions.scala:1190) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70) > at org.apache.spark.scheduler.Task.run(Task.scala:85) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > {code} > I am opening this jira to discuss how to workaround this issue in spark side. -- This message was sent by Atlassian JIRA (v6.3.4#6332) --------------------------------------------------------------------- To unsubscribe, e-mail: 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