Wow. I find it hard to believe that my Stereochemistry page did not behave
properly that long ago. We are about to leave town so I do not have time to
look at this for another week or so. But it would be interesting to have you
test the following URL with an old version of Firefox:
Phil,
we just need to have someone with a Mac use their Java Preferences App to
set the preference for applets to Java 1.5 and see if it fixes the problem.
I think it will. If so, then clearly it IS a Java 1.6 issue.
I would do it, but I can't get my Mac to set the preference for 1.6! I'm
On Tue, Jul 27, 2010 at 1:58 PM, Robert Hanson hans...@stolaf.edu wrote:
we just need to have someone with a Mac use their Java Preferences App to
set the preference for applets to Java 1.5 and see if it fixes the problem.
I think it will. If so, then clearly it IS a Java 1.6 issue.
I would
Failed with Firefox 3.5.11. Didn't notice at first. The page must load
problems randomly. The first couple times I tried it loaded the second problem
without error because the model hadn't been loaded previously. Once I clicked
through several problems then quit Firefox and restarted it
Dear Bob,
I made some progresses. I will summarize to the Jmol mailing when finished.
See http://q4md-forcefieldtools.org/RED/popup/javaconfig.php
The applet @ http://q4md-forcefieldtools.org/RED/popup/javaapplet.php
works fine using Firefox 3.5.11 Chrome 5.0.375.125 under fedora 12.
However,
None of my machines have an older version of Java on them.
On Jul 27, 2010, at 7:58 AM, Robert Hanson wrote:
Phil,
we just need to have someone with a Mac use their Java Preferences App to set
the preference for applets to Java 1.5 and see if it fixes the problem.
I think it will. If
well, then that particular implementation of Opera has a bug, doesn't it?
Jmol.js is automatically indicating . for the path when JmolInitialize()
is missing. And since vibrate.htm is working, then that is definitely not
the problem. The simplified page you have there loads for me. But you are
Quoting Robert Hanson hans...@stolaf.edu:
well, then that particular implementation of Opera has a bug, doesn't it?
ok, fine for me ;-)
Jmol.js is automatically indicating . for the path when JmolInitialize()
is missing. And since vibrate.htm is working, then that is definitely not
the
OK, Jmol 12.0.RC_29 is now up as
http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-12_0.zip
12.0 documentation is at http://chemapps.stolaf.edu/jmol/docs
Last chance to find bugs!
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
I was having a look at electron density maps (MRC/CCP4 format) in Jmol
12.0-RC26 (the application) and I get the following:
$ isosurface color [x008000] cutoff 1.0 3hyd_map.ccp4 mesh nofill;
isosurface1 created with cutoff=0.0 min=0.0 max=0.0; number of isosurfaces =
0
and nothing is displayed.
On Tue, Jul 27, 2010 at 12:51 PM, Thomas Stout thomasjst...@gmail.comwrote:
I was having a look at electron density maps (MRC/CCP4 format) in Jmol
12.0-RC26 (the application) and I get the following:
$ isosurface color [x008000] cutoff 1.0 3hyd_map.ccp4 mesh nofill;
isosurface1 created with
No, I have 12.0RC26 -- I'll go grab RC29 and check
-Tom
On Tue, Jul 27, 2010 at 11:44 AM, Robert Hanson hans...@stolaf.edu wrote:
On Tue, Jul 27, 2010 at 12:51 PM, Thomas Stout thomasjst...@gmail.comwrote:
I was having a look at electron density maps (MRC/CCP4 format) in Jmol
So, this is getting weird. The map loads and displays fine on my Windows XP
machine running the 12.0 RC29 Application. The very same files do not load
and display on my CentOS box. This is the stand-alone application, using
the files downloaded to the same directory as Jmol.jar (launched with
something's amiss. I don't see how it can be having a cutoff=0.0 with that
call. There was a problem in earlier versions of Jmol with the color density
option of isosurface. What if you leave the color out:
isosurface 3hyd_ccp4.map
better double check with
print _version
to see what version
yes and no!
using just isosurface 3hyd_map.ccp4; gives exactly the same result. (no
map display)
print _version reports 120
I (foolishly?) went and updated my linux JRE to 1.6.0_21, and now it refuses
to display the java console. I have over and over tried to launch it, so
far without
The Jmol application should be reporting Java messages in its own console --
check the Help tab.
On Tue, Jul 27, 2010 at 4:40 PM, Thomas Stout thomasjst...@gmail.comwrote:
yes and no!
using just isosurface 3hyd_map.ccp4; gives exactly the same result. (no
map display)
print _version
Works with my NT1 file; still throwing compatibility error with jmol, but works.
J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
(574) 284-4663
pb...@saintmarys.edu
17 matches
Mail list logo
