[Jmol-users] how can I update the color range of given isosurface

2010-08-11 Thread P . Canepa
Dear all, is anyway to reset the color range for a loaded map. Should I just re-type isosurface color range newMin newMax map ? If the surface i loaded from ajvxl file ?? I am asking this because I would not like to reload the two files (i.e. dens.cube, pot.cube ) but just update what is

Re: [Jmol-users] BUG: Parallel isosurfaces changed between RC26 and12.0.2

2010-08-11 Thread Charles Shubert
Thanks, Bob! --Chuck - Original Message - From: Robert Hanson To: Charles Harrison Shubert ; jmol-users@lists.sourceforge.net Sent: Wednesday, August 11, 2010 12:19 AM Subject: Re: [Jmol-users] BUG: Parallel isosurfaces changed between RC26 and12.0.2 This is fixed.

Re: [Jmol-users] how can I update the color range of given isosurface

2010-08-11 Thread Robert Hanson
color $isosurface1 rwb range 4.8 13 rwb is a color scheme name or color $isosurface1 myScheme=[x00FF00] [x00] [x00FF00] [x00] [xFF] range 4.8 13 where you are specifically defining the colors to be used over that range. On Wed, Aug 11, 2010 at 6:01 AM, P.Canepa pc...@kent.ac.uk

Re: [Jmol-users] change the visible part of an isosurface without reloading

2010-08-11 Thread Robert Hanson
On Tue, Aug 10, 2010 at 10:21 AM, Alexander Rose alexander.r...@weirdbyte.de wrote: Hi, before I forget it, this is also on my wishlist isosurface ID foo show CUTOFF x.xxx isosurface ID foo show SIGMA x.xx or with set? isosurface ID foo set SIGMA x.xx I think you mean that you

Re: [Jmol-users] change the visible part of an isosurface without reloading

2010-08-11 Thread Robert Hanson
On Wed, Aug 11, 2010 at 10:51 AM, Robert Hanson hans...@stolaf.edu wrote: On Tue, Aug 10, 2010 at 10:21 AM, Alexander Rose alexander.r...@weirdbyte.de wrote: Hi, before I forget it, this is also on my wishlist isosurface ID foo show CUTOFF x.xxx isosurface ID foo show SIGMA x.xx

Re: [Jmol-users] Fwd: Java embedding plugin

2010-08-11 Thread Egon Willighagen
On Wed, Aug 11, 2010 at 6:08 PM, Philip Bays pb...@saintmarys.edu wrote: I just got this response from the author of the Java Embedding Plugin that the Mozilla browsers use to implement Java applets on the Mac.  A solution may be in sight:=) Great! Thanx for getting in contact with them! Egon

[Jmol-users] Ooops

2010-08-11 Thread Philip Bays
While it solves the exception issue, it destroys the ability to manipulate the structure or to open the contextual menu. Back to the drawing board:=( Phil J. Philip Bays Professor of Chemistry Science Hall 172 Saint Mary's College Notre Dame IN 46556 (574) 284-4663

[Jmol-users] Fwd: Java embedding plugin

2010-08-11 Thread Philip Bays
I think I have the issue solved -- at least temporarily. The note below is a second communication from Mr. Michaud. On the basis of that I have observed the following: Right click on the Firefox icon to open package contents. Go to ContentsmacOSPlugins In Firefox 4 this