Re: [Paraview] Image Doesn't load correctly

2015-05-04 Thread Burlen Loring
Hi Kevin. Your RequestInformation looks a little bare. Unless things have changed recently, you might need to set WHOLE_EXTENT, ORIGIN, SPACING, CAN_PRODUCE_SUB_EXTENT keys there. and if you support parallel IO honor the requested extent in RequestData. Burlen On 05/04/2015 09:52 AM, Dean,

Re: [Paraview] Multiple GPUs per node

2015-05-11 Thread Burlen Loring
btw, here is an batch script https://github.com/burlen/pvserver-configs/blob/master/servers/nautilus/3.10.0-x/start_pvserver-x.qsub starting ParaView with pvservers assigned to GPU's round robin, from the SGI UV 1000 with 8 GPU. The other tricky aspect of running PV on multiple GPU is

[Paraview] Fwd: Re: Fwd: Image Doesn't load correctly

2015-05-05 Thread Burlen Loring
Forwarded Message Subject:Re: [Paraview] Fwd: Image Doesn't load correctly Date: Tue, 05 May 2015 09:14:06 -0700 From: Burlen Loring blor...@lbl.gov To: Dean, Kevin kevin.d...@decisionsciencescorp.com ParaView should set it after it determines if the reader

Re: [Paraview] default_servers.pvsc question

2015-04-15 Thread Burlen Loring
to the same problem we're trying to address :). What are your thoughts? Utkarsh On Mon, Apr 13, 2015 at 11:48 AM, Burlen Loring burlen.lor...@gmail.com wrote: OK, I added some notes based on the above discussion. On 04/13/2015 08:33 AM, Utkarsh Ayachit wrote: Great, let's start here: https

Re: [Paraview] default_servers.pvsc question

2015-04-15 Thread Burlen Loring
going back to your original question. when exec'ing new processes there are various flavors of exec, including one that uses your environment. Which made me wonder which flavor is PV using? I wrote a little pvsc to test this out(attached). Apparently PV does use the exec that includes your

Re: [Paraview] default_servers.pvsc question

2015-04-12 Thread Burlen Loring
Hi Utkarsh, I think environment variables are kind of a band aid around a larger issue. In addition to leveraging the user's local environment, there's also no way to get information from the server side environment. for example list of account numbers a user can charge jobs to, or a list of

Re: [Paraview] default_servers.pvsc question

2015-04-13 Thread Burlen Loring
: Burlen Loring burlen.lor...@gmail.com Date: Sunday, April 12, 2015 at 10:34 PM To: Utkarsh Ayachit utkarsh.ayac...@kitware.com, Rick Angelini richard.c.angelini@mail.mil Cc: paraview@paraview.org paraview@paraview.org Subject: Re: [Paraview] default_servers.pvsc question Hi Utkarsh, I think

Re: [Paraview] default_servers.pvsc question

2015-04-13 Thread Burlen Loring
).read() default_shell=default_shell.rstrip(\r\n) except: default_shell=/usr/krb5/bin/ Rick Angelini USArmy Research Laboratory CISD/HPC Architectures Team Phone: 410-278-6266 -Original Message- From: Burlen Loring burlen.lor

Re: [Paraview] save 'Surface LIC' as texture

2015-06-05 Thread Burlen Loring
*From:* Burlen Loring [burlen.lor...@gmail.com] *Sent:* Thursday, June 04, 2015 5:45 PM *To:* Göbbert, Jens Henrik; paraview@paraview.org *Subject:* Re: [Paraview] save 'Surface LIC' as texture I think it could be done if you're willing to hack into PV. There is already some mechanism

Re: [Paraview] save 'Surface LIC' as texture

2015-06-04 Thread Burlen Loring
I think it could be done if you're willing to hack into PV. There is already some mechanism in there for sucking textures back from the gpu and writing them to disk for debugging. It's not exactly what you need but at least will illustrate pulling data from GPU. a potential issue with this

Re: [Paraview] Selecting volume rendering causes output to vanish

2015-06-10 Thread Burlen Loring
On Wed, Jun 10, 2015 at 2:49 PM, Jeff Becker jeffrey.c.bec...@nasa.gov mailto:jeffrey.c.bec...@nasa.gov wrote: On 06/10/2015 11:46 AM, Burlen Loring wrote: Hmm. If Bunyk ray cast doesn't work some thing strange is going on as that is a software(non gpu) algorithm

Re: [Paraview] Selecting volume rendering causes output to vanish

2015-06-10 Thread Burlen Loring
2 things to try: set the remote render threshold to zero, and if that doesn't get it to show up, change the mapper to Bunyk ray cast. One of those usually works depending on what the cause of the issue is. On 06/10/2015 11:00 AM, Jeff Becker wrote: Hi. I have an unstructured grid file that

Re: [Paraview] Selecting volume rendering causes output to vanish

2015-06-10 Thread Burlen Loring
to unstructured data. If that works maybe something with your input data, or size of it. On 06/10/2015 11:27 AM, Jeff Becker wrote: On 06/10/2015 11:06 AM, Burlen Loring wrote: 2 things to try: set the remote render threshold to zero, and if that doesn't get it to show up, change the mapper to Bunyk ray cast

Re: [Paraview] Selecting volume rendering causes output to vanish

2015-06-13 Thread Burlen Loring
PM, Burlen Loring wrote: you ran out of memory. You may need more than 1 node, and a parallel file format. You mentioned that you had a grid of 500 x 500 points. You could save a lot of memory by using vtkImageData, vtkRectilinearMesh or vtkStructuredGrid if your data is amenable to one

Re: [Paraview] PYTHONPATH environmental variable

2015-06-17 Thread Burlen Loring
Polytechnique de Montréal/ /LADYF/ //Lab. de dynamique des fluides (514) 340 4711 ext 2489 Local: C-318.21.3* * On Wed, Jun 17, 2015 at 10:19 AM, Burlen Loring burlen.lor...@gmail.com mailto:burlen.lor...@gmail.com wrote: You also have to prepend the paths

Re: [Paraview] PYTHONPATH environmental variable

2015-06-17 Thread Burlen Loring
You also have to prepend the paths with the .so's to LD_LIBRARY_PATH before starting python. Burlen On 06/16/2015 07:19 PM, Felix Salazar wrote: Hello community, I normally run my Paraview scripts in pvpython, so far without issues. But I got some problems using specific Python functions

Re: [Paraview] ParaView 4.3.1 client runs X out of memory

2015-05-22 Thread Burlen Loring
Hi Jeff, It really sounds like you are unintentionally using X forwarding. It could be baked into your ssh config or a bash alias. I see the window with the gears if you are really doing remote rendering, you won't see the window. you may be able to confirm accidental X forward using ssh

[Paraview] paraview crashes during startup

2016-02-09 Thread Burlen Loring
A fresh clone as of midday yesterday PV client fails to launch with the below error. I enabled mpi and python, everything else is default value. libGL error: No matching fbConfigs or visuals found libGL error: failed to load driver: swrast X Error: BadValue (integer parameter out of range for

Re: [Paraview] Memory leak with Catalyst

2016-05-20 Thread Burlen Loring
VTK_DEBUG_LEAKS, although will catch some serious errors, will not catch all kinds of leaks. For example you can have leaks where data erroneously accumulates with each time step, but is deleted at program termination. VTK_DEBUG_LEAKS will not catch that kind of error. It's probably better to

Re: [Paraview] Memory leak with Catalyst

2016-05-23 Thread Burlen Loring
be willing to try it out if you have more details (commit hashtag, ticket, etc.), even if I have to figure out how to backport it from a newer version. Thanks, Tim *From:* Burlen Loring <burlen.lor...@gmail.com>

Re: [Paraview] Memory leak with Catalyst

2016-05-22 Thread Burlen Loring
*From:* ParaView <paraview-boun...@paraview.org> on behalf of Gallagher, Timothy P <tim.gallag...@gatech.edu> *Sent:* Friday, May 20, 2016 4:17 PM *To:* Burlen Loring; Andy Bauer *Cc:* paraview@paraview.org *Subject:* Re: [Para

Re: [Paraview] Importing paraview.simple from python

2016-08-10 Thread Burlen Loring
fyi, a common way to encounter Fatal Python error: PyThreadState_Get: no current thread is when cmake's find Python modules mix two version of Python. this happen if you have two installs, one in a system location and one else where with interpreter in the path. You can identify it in the

Re: [Paraview] problems using pvbatch in frozen build

2016-07-11 Thread Burlen Loring
certainly seems like a bug worth fixing. let me know if you want me to start a bug report. On 07/08/2016 01:19 PM, Burlen Loring wrote: Thanks Utakarsh. It sounds like it may be possible to work around the issue by not importing the lookuptable module from simple. However, it's "import

[Paraview] making the leap to v5.1 on the cray

2016-07-05 Thread Burlen Loring
Hi All, first of all, is 5.1 production ready? or is 4.4 still the way to go in a production environment? this would be the only install available for users so it's important that it function reliably/correctly. re: 5.1, I'm wondering what the recommended mesa config for use with pv 5.1 on

[Paraview] problems using pvbatch in frozen build

2016-07-05 Thread Burlen Loring
Hi All, I'm encountering some issues when trying to use pvbatch from a frozen build(PARAVIEW_FREEZE_PYTHON=ON). Seems that certain key python modules are missing.ie math. However, I can use Python shell feature in the GUI from the same build. Do we have any idea about what may be wrong with

Re: [Paraview] making the leap to v5.1 on the cray

2016-07-05 Thread Burlen Loring
got it thanks! On 07/05/2016 02:16 PM, Utkarsh Ayachit wrote: first of all, is 5.1 production ready? or is 4.4 still the way to go in a production environment? this would be the only install available for users so it's important that it function reliably/correctly. See this thread:

Re: [Paraview] [Non-DoD Source] making the leap to v5.1 on the cray

2016-07-07 Thread Burlen Loring
Research Laboratory CISD/HPC Architectures Team Phone: 410-278-6266 -Original Message- From: ParaView <paraview-boun...@paraview.org> on behalf of Burlen Loring <blor...@lbl.gov> Date: Tuesday, July 5, 2016 at 2:51 PM To: ParaView <paraview@paraview.org> Subject: [Non-DoD

Re: [Paraview] associating table data with a Paraview source?

2016-08-25 Thread Burlen Loring
hey Cynthia, if your data is in, or can be converted to, CSV format just open it up, and apply the table to points filter, followed by glyph filter. table to points you'll need to specify the coordinate arrays and check keep all arrays option. in the glyph filter properties you can select a

Re: [Paraview] RAW (binary) file import issues

2016-11-25 Thread Burlen Loring
g the MPI-I/O path anyway. I would follow Berk’s suggesting of looking into the filesystem before diving into the guts of MPI-I/O. -Ken *From:*ParaView [mailto:paraview-boun...@paraview.org] *On Behalf Of *Burlen Loring *Sent:* Tuesday, November 22, 2016 12:55 PM *To:* Geveci, Berk (Exter

Re: [Paraview] RAW (binary) file import issues

2016-11-22 Thread Burlen Loring
I've hit that before. the RAW reader uses MPI-I/O, and MPI uses signed int everywhere in its API, so there are limits that you end up hitting. For instance to partition the data among processors one must give MPI-I/O the starting offset of the data in the file as a signed int, and that is

Re: [Paraview] plugins with 5.2

2017-01-03 Thread Burlen Loring
! Hmm, that's odd. Can you share the plugin code with me? Let's see if I can reproduce the issue. Utkarsh On Tue, Jan 3, 2017 at 2:13 PM, Burlen Loring <blor...@lbl.gov> wrote: Hi Utkarsh, Happy new year! I have a couple of questions about the new way. Shouldn't this be automatically

[Paraview] plugins with 5.2

2016-12-21 Thread Burlen Loring
After upgrading to 5.2 my plugin is not compiling. When I configure the plugin I see a few pages of the following: CMake Warning (dev) at io/CMakeLists.txt:54 (add_library): Policy CMP0028 is not set: Double colon in target name means ALIAS or IMPORTED target. Run "cmake

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-21 Thread Burlen Loring
OK, good to know. would any one be willing to give a quick review? https://gitlab.kitware.com/paraview/paraview/merge_requests/1476 On 03/20/2017 12:16 PM, Ben Boeckel wrote: On Mon, Mar 20, 2017 at 11:31:28 -0700, Burlen Loring wrote: I had to apply to clang-format manually. it's up

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-17 Thread Burlen Loring
fyi, https://gitlab.kitware.com/paraview/paraview/merge_requests/1476 it complains about clang-format, but it seems that the source file was not formatted in that way to begin with. On 03/17/2017 12:11 PM, Burlen Loring wrote: Thank you guys. I poked around this morning and found

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-17 Thread Burlen Loring
Thank you guys. I poked around this morning and found the following: The "BlueObeliskElements" is the only cmap in the default presets that triggers the issue. It has more values than can be displayed on a single line, and this is what triggers the FPE in the logic. Enforcing a minimum

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-20 Thread Burlen Loring
install clang-format, run `git clang-format` in your ParaView source directory, amend your commit, then force push it with `git gitlab-push -f`. - Cory On Fri, Mar 17, 2017 at 3:36 PM, Burlen Loring <burlen.lor...@gmail.com> wrote: fyi, https://gitlab.kitware.com/paraview/paraview/merge_r

[Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-16 Thread Burlen Loring
I tried out ParaView 5.3.0 today, and I encountered the above crash. steps to reproduce: load data (sphere source will work), set color by var, open color map dialog, change to categorical, open choose presets dialog, scroll down, when you get near the bottom you will get the crash. Program

Re: [Paraview] Program received signal SIGFPE, Arithmetic exception.

2017-03-16 Thread Burlen Loring
not sure if it matters, but I had been trying to load a color map that was saved from ParaView 5.1.0. attached. On 03/16/2017 04:50 PM, Burlen Loring wrote: I tried out ParaView 5.3.0 today, and I encountered the above crash. steps to reproduce: load data (sphere source will work), set color

Re: [Paraview] problem freezing python

2017-04-21 Thread Burlen Loring
On 04/21/2017 10:19 AM, Ben Boeckel wrote: On Thu, Apr 20, 2017 at 14:44:47 -0700, Burlen Loring wrote: [100%] Freezing Python and ParaView Python packages and modules Removing /usr/common/software/ParaView/builds/ParaView-5.3.0/Utilities/PythonInitializer/FrozenPython Error: could not find

Re: [Paraview] problem freezing python

2017-04-24 Thread Burlen Loring
Error: No module named math On 04/24/2017 06:52 AM, Ben Boeckel wrote: On Fri, Apr 21, 2017 at 12:10:36 -0700, Burlen Loring wrote: That file lives in: lib/python2.7/config/config.c.in OK, it looks like the freeze_paraview.py file can't find it. Could you debug around line 250 to see what it is

Re: [Paraview] gpu_shader4 extension is not supported

2017-05-15 Thread Burlen Loring
Hi Patrick, Your output shows you enabled some gpu specific drivers, and GLX. I think that is going to screw things up for you. Best to disable all of them but the ones you specifically need and to explicitly disable glx. Here is how I configured OSMesa for a Cray

Re: [Paraview] gpu_shader4 extension is not supported

2017-05-17 Thread Burlen Loring
uld I post on the Mesa forum ? Patrick Burlen Loring wrote: that's the point. this allows you to run without the windowing system or GPU on the cluster. Most cluster have neither. If you wanted to provide the GUI then I would suggest you have two installs of both ParaView and Mesa. One based

Re: [Paraview] gpu_shader4 extension is not supported

2017-05-16 Thread Burlen Loring
. Burlen On 05/16/2017 08:38 AM, Patrick Begou wrote: Burlen Loring wrote: ../mesa-17.0.2/configure --enable-texture-float --disable-glx --disable-dri --disable-egl --disable-gles1 --disable-gles2 --disable-gbm --disable-driglx-direct --disable-xvmc --enable-gallium-osmesa --with-gallium-drivers

Re: [Paraview] gpu_shader4 extension is not supported

2017-05-12 Thread Burlen Loring
Hi Patrick, OSMesa (and friends such as OpenSWR) do not need to make use of GLX. In fact I think it should be disabled completely for that case in both Mesa and ParaView builds. For eg, when you configure ParaView you'd specify -DVTK_USE_X=OFF. At least this is how it was in the past. I

Re: [Paraview] gpu_shader4 extension is not supported

2017-05-23 Thread Burlen Loring
_AVCODECID=ON \ ... Burlen Loring wrote: - one build for the front end with GUI: it has no GPU but a windowing system (this is the blocking point at this time) OK. to accomplish this, first do a Mesa build configured as follows(glx+software rendering) ../mesa-17.0.6/configure --enable-texture-floa

Re: [Paraview] Confirming that pvserver runs with OSMesa + OpenSWR driver on cpu only compute nodes

2018-01-02 Thread Burlen Loring
Hi Fabrizio, in the shell where you launch your pvserver you could set the following environment variables: export LIBGL_ALWAYS_SOFTWARE=1 GALLIUM_DRIVER=swr this is bash syntax, your shell may be different. When I do that I see "SWR detected AVX" print in that shell when the connection

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