[Rd] R v2.11.0: HTML package index broken(?)

2009-10-17 Thread Henrik Bengtsson
Hi, in R v2.11.0 (2009-10-15 r50085) on Windows Vista the package index and its links for the package installed in the user-specific library path are all broken, e.g. In http://127.0.0.1:28251/doc/html/packages.html I get: Packages in C:\Users\hb\R\win-library\2.11

Re: [Rd] forwarded: bug (?) in cut.POSIXt with breaks=integer

2009-10-17 Thread Vitalie S.
On Fri, 16 Oct 2009 16:12:40 +0200, Ben Bolker bol...@ufl.edu wrote: PS a parallel problem seems to occur in cut.Date ... cut.POSIXt and cut.Date both allow breaks to be a single integer specifying the number of breaks, and both call if(is.null(labels)) levels(res) -

[Rd] Goto BLAS

2009-10-17 Thread Evan Cooch
I was on the Goto BLAS maillist yesterday, asking some question about relative speed/performance/tuning of Goto BLAS and (specifically) R. I received a reply from Kazushige Goto (the developer and maintainer of Goto BLAS), who as part of his answer to some of my queries made the following

[Rd] linking to package directories broken in R = 2.10 beta

2009-10-17 Thread Thomas Petzoldt
Dear R developers, some of our packages come with additional programming examples in a directory called /examples which is created from /inst/examples. This directory is linked from the docs (e.g. in inst/doc/index.html): dl dta href=../examples/examples/a: ddSource code of examples /dl

[Rd] (PR#14012)

2009-10-17 Thread sje30
I think Rscript has a problem running files that have mac encodings for newline (^M rather than ^J on linux). If I source the file within R, it works okay: source('j.R') [1] MEA_data/sernagor_new/CRX_P7_1.txt But if I run the file using Rscript on a linux box I get a strange error message: $

Re: [Rd] forwarded: bug (?) in cut.POSIXt with breaks=integer

2009-10-17 Thread Gabor Grothendieck
That is usually done with trunc rather than cut since in the case of a time series we normally don't want a factor result (which is what cut would give): trunc(tt, secs) trunc(tt, mins) # etc trunc.POSIXt does not support the 30 secs syntax but trunc.times in the chron package supports similar

Re: [Rd] linking to package directories broken in R = 2.10 beta

2009-10-17 Thread Duncan Murdoch
Thomas Petzoldt wrote: Dear R developers, some of our packages come with additional programming examples in a directory called /examples which is created from /inst/examples. This directory is linked from the docs (e.g. in inst/doc/index.html): dl dta href=../examples/examples/a: ddSource

Re: [Rd] linking to package directories broken in R = 2.10 beta

2009-10-17 Thread Thomas Petzoldt
Duncan Murdoch wrote: Thomas Petzoldt wrote: [...] This is fine, but in contrast to older versions (= 2.9.2) no automatic index is created for the linked directory, so we now get: URL /library/foo/examples/ was not found but linking to *individual files* (e.g. examples/example.R) works

Re: [Rd] linking to package directories is NOT broken in R = 2.10 beta

2009-10-17 Thread Prof Brian Ripley
When you linked to ../examples/ R was not involved, and what you are seeing is what your browser did with a file:// url. Most browsers will support a wide range of file types, and list directories: but that is not something that was ever (AFAICS) documented to work. The 'issue' is your

Re: [Rd] (PR#14012)

2009-10-17 Thread Seth Falcon
* On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote: I think Rscript has a problem running files that have mac encodings for newline (^M rather than ^J on linux). If I source the file within R, it works okay: source('j.R') [1] MEA_data/sernagor_new/CRX_P7_1.txt But if I run the

Re: [Rd] (PR#14012)

2009-10-17 Thread Gabor Grothendieck
Even though its not hard to convert files, I think it would be better if R could directly handle different line endings since R tends to be used in a cross platform way and its common to have files of different line endings that originated from different systems. On Sat, Oct 17, 2009 at 5:03 PM,

[Rd] R292 on AIX53 using gcc

2009-10-17 Thread Chuck White
I apologize for cross posting this message in the R-help group as well. Having posted it there a couple of hours ago, I felt this may be a more appropriate forum for a question of this type. Hello -- I am unable to build R 2.9.2 on IBM PowerPC AIX5.3. I would appreciate any help in this

Re: [Rd] (PR#14012)

2009-10-17 Thread Peter Dalgaard
Seth Falcon wrote: * On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote: I think Rscript has a problem running files that have mac encodings for newline (^M rather than ^J on linux). If I source the file within R, it works okay: source('j.R') [1] MEA_data/sernagor_new/CRX_P7_1.txt

Re: [Rd] (PR#14012)

2009-10-17 Thread Prof Brian Ripley
On Sat, 17 Oct 2009, Seth Falcon wrote: * On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote: I think Rscript has a problem running files that have mac encodings for newline (^M rather than ^J on linux). I think those are Mac conventions for end-of-line, not for newline. Even in

[Rd] Fortran with OpenMP

2009-10-17 Thread Fabio Mathias CorrĂȘa
Dear, I wrote a code in Fortran using OpenMP. When testing the code in Fortran it was working. However, changing the code for the R, it does not indicate the use of threads, it should indicate. I know that the R accepts the directives of OpenMP, but I can not use them correctly in R. Below is

[Rd] Rscript not returning zero

2009-10-17 Thread Rodrigo Flores
Hi I'm trying to run a R script in a computer grid using the Rscript interpreter, but the Rscript is not returning zero (even when the scripts processes succesfully) on its exit which causes the scheduler to detect an error and not records the output. Is there any way to get the Rscript

Re: [Rd] Rscript not returning zero

2009-10-17 Thread Prof Brian Ripley
On Sat, 17 Oct 2009, Rodrigo Flores wrote: Hi I'm trying to run a R script in a computer grid using the Rscript interpreter, but the Rscript is not returning zero (even when the scripts processes succesfully) on its exit which causes the scheduler to detect an error and not records the output.