Hi,
I want to unsubscribe from the mail list.
thank you
Jenny
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It would be nice to have a single function call that would hide these
details. It could probably be made more efficient also by avoiding multiple
matching, unnecessary revmap lists, etc. tableAsGRanges() is not a good
name but it conveys what I mean (does that make it actually good?).
On Mon, Apr
On 04/27/2015 02:15 PM, Michael Lawrence wrote:
It would be nice to have a single function call that would hide these
details. It could probably be made more efficient also by avoiding
multiple matching, unnecessary revmap lists, etc. tableAsGRanges() is
not a good name but it conveys what I
Dear Martin,
Does the work on nchar mean that bugs #16090 and #16091 will be resolved
[1,2]?
Thanks,
Mark
[1] https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16090
[2] https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16091
On Sat, Apr 25, 2015 at 11:06 PM, James Cloos
Sometimes the absence of a name is maked by an NA:
x - 1:2
names(x)[[1]] - a
names(x)
# [1] a NA
Whereas other times its
y - c(a = 1, 2)
names(y)
# [1] a
Is this deliberate? The help for names() is a bit murky, but an
example shows the NA behaviour.
Hadley
--
http://had.co.nz/
On 27 Apr 2015, at 13:48 , Hadley Wickham h.wick...@gmail.com wrote:
Sometimes the absence of a name is maked by an NA:
x - 1:2
names(x)[[1]] - a
names(x)
# [1] a NA
Whereas other times its
y - c(a = 1, 2)
names(y)
# [1] a
Is this deliberate? The help for names() is a bit
There is no inconsistency. Documentation of `names` says ...value
should be a character vector of up to the same length as x...
In the first definition your character vector is not the same length
as length of x, so you enforce NA by not defining value[2]
x - 1:2
value-c(a)
value[2]
[1] NA
where
In `?names`:
If ‘value’ is shorter than ‘x’, it is extended by character ‘NA’s
to the length of ‘x’.
So it is as documented.
That said, it's somewhat surprising that both NA and serve as a
placeholder for a 'missing name'; I believe they're treated
identically by R under the hood
Thanks.
It is up again.
Bill
On Apr 26, 2015, at 12:53 PM, Uwe Ligges lig...@statistik.tu-dortmund.de
wrote:
On 26.04.2015 13:23, William Revelle wrote:
This still seems to be the case.
I tried uploading the most recent version of psych and got as far as the
Step 3 page which
I can't upgrade BiocInstaller :
root@bioinfo:/home/dario/Documents# R
R version 3.2.0 (2015-04-16) -- Full of Ingredients
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are
Hi Henrik,
I know it's not necessary and I know that the WRE manual and
'R CMD check' don't like this but I like to list in Imports what
I import and to list in Depends what I want to see attached to
the search() path. For the same reason that I like to explicitly
export the generic functions
- Original Message -
From: Henrik Bengtsson henrik.bengts...@ucsf.edu
To: bioC-devel bioc-de...@stat.math.ethz.ch
Sent: Sunday, April 26, 2015 7:14:20 PM
Subject: [Bioc-devel] Bioc package pages: List also BugReports for a package?
For affxparser, we've got the following in
Mark van der Loo mark.vander...@gmail.com
on Mon, 27 Apr 2015 10:26:32 +0200 writes:
Dear Martin, Does the work on nchar mean that bugs #16090
and #16091 will be resolved [1,2]?
Thanks, Mark
[1] https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16090
[2]
Probably because that would mean genomeIntervals depending on IRanges.
Because GenomeInfoDb needs CompressedList.
On Mon, Apr 27, 2015 at 11:14 AM, Hervé Pagès hpa...@fredhutch.org wrote:
Hi Nico,
On 04/26/2015 09:58 AM, Nicolas Delhomme wrote:
Hej Hervé (I guess)!
Could it be possible to
Hej Michael and Hervé!
Importing from GenomeInfoDb is what I do at the moment. I will have to check
more extensively - adding more unit tests - but it seems to work so far,
without depending on IRanges - thanks Michael I'll keep that in mind while
testing.
I just had the understanding that if
On 04/24/2015 11:41 AM, Michael Lawrence wrote:
Taking this a bit off topic but it would be nice if we could get the
GRanges equivalent of as.data.frame(table(x)), i.e., unique(x) with a
count mcol. Should be easy to support but what should the API be like?
This was actually the motivating use
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