Hi all,
In my package, I define some constant. In the previous version of R, I just define then in
/data/constants.R but it seems that it is no longer possible. Instead, I am asked to define them
in the namespace. I am not sure to understand what it means. Shall I define them in the NAMESPACE
On 15/05/2015 01:19, Smith, Virgil wrote:
The R Installation and Administration manual section A.1 states that glibc
should provide a suitable iconv function, but I can't get R's configure script
to accept/validate iconv on a Linux platform I need to support using glibc 2.20.
Is glibc is
I'm trying to use a nested ifelse condition to compare two lines.
Input:
Code:
Expected Output:
Actual Output:
Any idea what might be causing this problem?
--
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Make the example print out Sys.getenv() and then manually inspect?
Otherwise, you'll need to debug the code by adding print statements.
Something clearly is not as you expect, so you need carefully
empirically verify your assumptions about the inputs to and
environment of the function.
Hadley
Yes, I did read that part but it doesn't say anything about who to contact in
case one doesn't have access to a Sparc Solaris machine, but one still wants to
run the tests on that architecture. As I said, I think I got the issue
resolved, but before I resubmit, I would prefer to check this -- I
On 15/05/2015 05:35, bw1984 wrote:
I'm trying to use a nested ifelse condition to compare two lines.
Input:
Code:
Expected Output:
Actual Output:
Any idea what might be causing this problem?
--
View this message in context:
Does anyone else have any thoughts about troubleshooting the R CMD check
environment?
Charles
On Wed, May 13, 2015 at 1:57 PM, Charles Determan cdeterma...@gmail.com
wrote:
Thank you Dan but it isn't my tests that are failing (all of them pass
without problem) but one of the examples from the
On 15 May 2015 at 07:47, Dirk Eddelbuettel wrote:
|
| On 15 May 2015 at 07:13, Hadley Wickham wrote:
| | Make the example print out Sys.getenv() and then manually inspect?
|
| On the systems I usesystem(env) is more efficient as it gets you
| all at once.
Ahh, yes, and I have since
On 15 May 2015 at 07:13, Hadley Wickham wrote:
| Make the example print out Sys.getenv() and then manually inspect?
On the systems I usesystem(env) is more efficient as it gets you
all at once.
| Otherwise, you'll need to debug the code by adding print statements.
| Something clearly
On 05/15/2015 05:05 AM, Charles Determan wrote:
Does anyone else have any thoughts about troubleshooting the R CMD check
environment?
In the pkg.Rcheck directory there is a file pkg-Ex.R.
LANGUAGE=en _R_CHECK_INTERNALS2_=1 $(R_HOME)/bin/R --vanilla pkge-Ex.R
followed by the usual strategy of
Hi Michael,
It works perfectly, thanks a lot!
Christophe
I'm guessing you just need to define them in /R/constants.R and then export()
them from the NAMESPACE.
On Fri, May 15, 2015 at 2:32 AM, Christophe Genolini cgeno...@u-paris10.fr
mailto:cgeno...@u-paris10.fr wrote:
Hi all,
On May 13, 2015, at 2:28 PM, Henrik Bengtsson henrik.bengts...@ucsf.edu wrote:
While at it: 'Makevars' is an R invention (i.e. documentation of it
is only available through the R docs), correct? /Henrik
Well, it's just a Makefile fragment that gets included along with the rest of
the
The error can be reproduced by running the bigmemory-Ex.R script which
you can find in the bigmemory.Rcheck directory, either in batch mode or
via source() in an interactive session.
It seems that you have underlying memory allocation problems. I can get
the script to running by adding gc() calls
'make check-all' for current R has been showing this error in the middle
for a few months now - any thought on fixing this? I think cmprsk
should be either included in the recommended bundle, or
the survival vignette to not depend on it. Having 'make check-all' showing
glaring ERROR's for a few
I have a local library with functions that interrogates an institution-specific web API,
so is not of interest to anyone outside of Mayo. For some reason the R CMD INSTALL
command fails. See below:
Build the library, then install it.
tmt-local2127% R CMD build dart
* checking for file
It's hard to diagnose this without your package sources / a
reproducible example.
Shot in the dark: one thing worth checking is that you don't have an
entry in your `.Rbuildignore` that's removing files you don't expect
it to (maybe that's causing R to strip out the 'doc/index.html' file)
Kevin
Bingo! So very obvious once it was pointed out.
Thanks,
Terry
On 05/15/2015 03:05 PM, Kevin Ushey wrote:
It's hard to diagnose this without your package sources / a
reproducible example.
Shot in the dark: one thing worth checking is that you don't have an
entry in your `.Rbuildignore`
Developers --
We are implementing an 'end-of-life' policy for Bioconductor packages, with the
current version at
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