Re: [R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

It's Rcpp 0.12.12 and R 3.4.1. If nobody can reproduce this with Windows 7 (?), I'll assume it's something odd with my system. Thanks On Mon, Aug 28, 2017 at 7:48 PM, Uwe Ligges wrote: > > > On 28.08.2017 18:10, Peter Clifford [peter.cliff...@stats.ox.ac.uk]

Re: [Bioc-devel] Bioconductor package landing pages

Hi Nima, Please check http://bioconductor.org/checkResults/3.6/bioc-LATEST/biotmle/malbec1-buildsrc.html, it shows that the page was generated on Sunday. There is also a snapshot date when your repo was captured by the nightly build, and even the last commit. But this issue, is because your

[Bioc-devel] Bioconductor package landing pages

Hello All --- After the relatively recent migration from SVN to git, I've followed the various guidelines for linking the GitHub repo of my package biotmle to the Bioconductor git server, I've pushed several important updates to the Bioc master branch. My

Re: [R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

On 28.08.2017 18:10, Peter Clifford [peter.cliff...@stats.ox.ac.uk] wrote: On Mon, Aug 28, 2017 at 4:53 PM, Dirk Eddelbuettel wrote: On 28 August 2017 at 10:21, Peter Clifford [peter.cliff...@stats.ox.ac.uk] wrote: | R version 3.4.0 and 3.4.1 with Rcpp 0.12.12 Windows 7.

[Bioc-devel] ensembl 90 gtfs and fasta twobits have been added to AnnotationHub

The ensembl 90 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc3.6 (development) > hub = AnnotationHub() snapshotDate(): 2017-08-28 > length(query(hub, c("ensembl", "gtf", "release-90"))) [1] 248 > length(query(hub,

Re: [R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

On Mon, Aug 28, 2017 at 4:53 PM, Dirk Eddelbuettel wrote: > > On 28 August 2017 at 10:21, Peter Clifford [peter.cliff...@stats.ox.ac.uk] > wrote: > | R version 3.4.0 and 3.4.1 with Rcpp 0.12.12 Windows 7. > > Potentially wrong list here as it is an Rcpp question... > > | Trying

Re: [R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

On 28 August 2017 at 10:21, Peter Clifford [peter.cliff...@stats.ox.ac.uk] wrote: | R version 3.4.0 and 3.4.1 with Rcpp 0.12.12 Windows 7. Potentially wrong list here as it is an Rcpp question... | Trying to fix persistent "Found no calls to: 'R_registerRoutines', | 'R_useDynamicSymbols'"

Re: [R-pkg-devel] Saving provenance data to the file system

Can't you do it as, e.g. write.table() writes files: Simply require a filename from the user, then you are on the save side. And in your examples / tests, write to some tempfile(). Best, Uwe Ligges On 25.08.2017 21:11, Jenny Bryan wrote: I can't comment on the specific intersection of your

[R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

R version 3.4.0 and 3.4.1 with Rcpp 0.12.12 Windows 7. Trying to fix persistent "Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'" problem, when running Rcmd check --as-cran. Eventually gave up with my own package and tried the simplest possible case using

Re: [Rd] [bug report] Cyrillic letter "я" interrupts script execution via R source function

My understanding (which could be wrong) is that when you source a file, it first gets translated to your native locale and then parsed. When you parse a character vector, it does not get translated. In your locale, every "я" character (U+044F) gets replaced by the byte "\xFF": >

[Bioc-devel] git server maintenance

git.bioconductor.org will be rebooted for routine maintenance on Tuesday, August 29 at 8am EST. This should only take a few minutes and in general should not be noticed. If you push or pull to the git server at this exact time the action may fail and you'll have to retry. I'll post back when

Re: [Bioc-devel] [Bioconductor/Contributions] DMCHMM (#430)

Please comment on the issue that the package is ready for another review so your reviewer knows you are finished making changes. It is also nice to include a summary of what has been changed on the github issue. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department

[Rd] [bug report] Cyrillic letter "я" interrupts script execution via R source function

Hello, I do not have an account on R Bugzilla, so I will post my bug report here. I want to report a very old bug in base R *source()* function. It relates to sourcing some R scripts in UTF-8 encoding on Windows machines. For some reason if the UTF-8 script is containing cyrillic letter *"я"*,

[Rd] patch: automatically adjust width option when terminal is resized

Hi, I guess there have been discussions about this in the past and from what I understood hooking an R-function to facilitate automatic adjustment is problematic. So why not doing it like this: --- R-3.4.1/src/unix/sys-std.c 2017-03-24 00:03:59.0 +0100 +++