I've not been able to install gdb for RTOOLS40 on Windows 10. The rtools
installer (rtools40-x64_86.exe) doesn't seem to include gdb by default, and
when I follow the instructions for adding gdb (which I tracked down at
https://github.com/r-windows/docs/blob/master/faq.md) this is what
On 14/04/2021 12:11 p.m., Federico Zanghi wrote:
Hi :)
I'm here because i have a problem with my package...i have the function
"SARMAX.refinement", clearly the problem is that i can't assign a variable
on global environment from a function.
So when i CHECK the package it gives me 1 Note that
Hi All,
I got warning message in windows building like:
Rd warning: cannot open file
'D:/biocbuild/bbs-3.13-bioc/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/help/$<-,track-method.html':
Invalid argument
I used RoxygenNote to create the Rd file and the note I wrote
remotes::install_github() is a function aimed at developers that need
the unreleased version of a package for testing or other dev purposes.
In these cases you don't usually need the vignettes. hence the
default.
Gabor
On Wed, Apr 14, 2021 at 8:17 PM Chris Evans wrote:
>
> Oh no, how
Oh no, how embarrassing!
But in my defence, am I the only one who thinks having build_vignettes = FALSE
as default is a bit anti-vignettes?!
Many thanks both,
Chris
- Original Message -
> From: "Zhian N. Kamvar"
> To: "r-package-devel"
> Sent: Wednesday, 14 April, 2021 17:57:11
>
remotes::install_github() does not build the vignettes by default, you
can use the build_opts argument to change this.
Gabor
On Wed, Apr 14, 2021 at 6:53 PM Chris Evans wrote:
>
> As ever, my package is https://github.com/cpsyctc/CECPfuns and I am building
> withing Rstudio 1.4.1103
>
> I am
Hi Chris,
You need to add the `build_vignettes = TRUE` argument to `install_github()`.
On 4/14/21 9:53 AM, Chris Evans wrote:
As ever, my package is https://github.com/cpsyctc/CECPfuns and I am building
withing Rstudio 1.4.1103
I am aiming for the package to have fairly comprehensive
As ever, my package is https://github.com/cpsyctc/CECPfuns and I am building
withing Rstudio 1.4.1103
I am aiming for the package to have fairly comprehensive vignettes and there
are four now, but two are very incomplete.
The problem I have may relate to
Hi all,
I am submitting [EWCE](https://github.com/NathanSkene/EWCE) to bioconductor and
have been working to reduce the runtime of the R CMD Check which was causing
issues. I have improved the run time and locally, on my mac, it is now running
in 11m 56.5s. However, I still get a timeout error
Hi :)
I'm here because i have a problem with my package...i have the function
"SARMAX.refinement", clearly the problem is that i can't assign a variable
on global environment from a function.
So when i CHECK the package it gives me 1 Note that doesn't make me publish
the package :(
The Note is
On 14/04/2021 9:26 a.m., Jacob Nabe-Nielsen wrote:
Hi Duncan
Thanks a lot for the help. This works, but unfortunately it does not
result in a landscape which is cropped to the extent of the bathymetry
raster file... it would be nice to be able to do that as well (as you
can if you use the
Dear Georgi
Thanks a lot for the suggestion. I have now imported rgdal and moved it from
Suggests of Imports. However, this did not solve my problem.
I also tried importing 'plot' directly from rgdal, but then I got the error:
object ‘plot’ is not exported by 'namespace:rgdal'
Best,
Jacob
>
Release 3.12 Code Freeze:
The release 3.12 branch will be frozen May 4th. All code changes should be
committed by May 3rd. After this date there will be no updates to Bioconductor
3.12 packages in Bioconductor.
Devel 3.13 Deadline:
The deadline for packages to pass R CMD build/check without
Hi Duncan
Thanks a lot for the help. This works, but unfortunately it does not result in
a landscape which is cropped to the extent of the bathymetry raster file... it
would be nice to be able to do that as well (as you can if you use the 'raster'
and 'sp' packages).
Best wishes,
Jacob
On
> library(DEPONS2R)
>
> data("bathymetry")
> plot(bathymetry)
> data("coastline")
> library(rgdal)
> # Change projection of coastline to match that of bathymetry data
> coastline2 <- spTransform(coastline, crs(bathymetry)) plot(coastline2,
> add=TRUE, col="lightyellow2")
The inclusion of
That would work.
Sys.info()['release']
# release
# "5.4.72-microsoft-standard-WSL2"
Brenton
From: Martin Maechler
Sent: Wednesday, April 14, 2021 03:28
To: Brenton Wiernik
Cc: r-devel@r-project.org
Subject: Re: [Rd] Sys.timezone() fails on Linux under Microsoft WSL
On 14/04/2021 5:41 a.m., Jacob Nabe-Nielsen wrote:
Dear all,
I have just discovered an error in a package that I have already uploaded to
CRAN, and cannot figure out how to fix it. All help will be greatly appreciated.
The package is called DEPONS2R, and is available from:
Dear all,
I have just discovered an error in a package that I have already uploaded to
CRAN, and cannot figure out how to fix it. All help will be greatly appreciated.
The package is called DEPONS2R, and is available from:
https://cran.r-project.org/web/packages/DEPONS2R/index.html
The problem
Am 14.04.21 um 13:11 schrieb Rafael CM:
> Dear all,
> I am having the following warning when loading my rpackage:
>
> * checking LazyData ... WARNING
> LazyData DB of 62.1 MB without LazyDataCompression set
>
>
> I can't get to fix this problem. I have tried the tools option to optimize
>
checking LazyData ... WARNING
LazyData DB of 62.1 MB without LazyDataCompression set
See �1.1.6 of 'Writing R Extensions'
On Wed, Apr 14, 2021 at 1:38 PM Uwe Ligges
wrote:
>
>
> On 14.04.2021 00:43, Rafael CM wrote:
> > Dear all,
> > I am submitting the RTIGER package and I have the
On 14.04.2021 00:43, Rafael CM wrote:
Dear all,
I am submitting the RTIGER package and I have the following warning:
checking LazyData ... WARNING
A full message would be needed
Best,
Uwe Ligges
I have saved the data with the optimal compression format. Could someone
help me?
Dear all,
I am having the following warning when loading my rpackage:
* checking LazyData ... WARNING
LazyData DB of 62.1 MB without LazyDataCompression set
I can't get to fix this problem. I have tried the tools option to optimize
saving. I used different types of compressions. I also have
Or simply navigate to the install log which is avaiable from the links
you got.
Best,
Uwe Ligges
On 14.04.2021 03:47, Dirk Eddelbuettel wrote:
On 14 April 2021 at 01:03, csmatyi wrote:
| Debian
|
| * using log directory ‘/srv/hornik/tmp/CRAN/hybridogram.Rcheck’
| * using R Under development
On Fri, 26 Mar 2021 14:49:56 +0100
Martin Maechler wrote:
> I concluded I liked the first [patch] because it would achieve
> what's considered "uniformly better" in the sense that it makes
> R graphics behave like "all other" desktop applications *and* it
> would do so for all possible window
Andreas,
What does any of this to do with CRAN? This not a the CRAN list - we're
discussing the proper approach of using valgrind and R can only assume that the
memory is uninitialised (since it cannot safely assume anything else) so it is
up to you to declare the memory as initialised if
Andres,
correct me if I'm wrong, but the issue here is not initialisation but rather
valgrind flagging. You simply have to call VALGRIND_MAKE_MEM_DEFINED() in your
code after allocVector3() to declare that you have initialised the memory - or
am I missing something?
Cheers,
Simon
> On
> Brenton Wiernik
> on Tue, 13 Apr 2021 09:15:50 -0400 writes:
> In Microsoft’s Windows Subsystem for Linux (WSL or WSL2),
> there is not system framework, so utilities that depend on
> it fail. This includes timedatectl which R uses in
> Sys.timezone(). The
On 4/13/21 4:36 PM, Witold E Wolski wrote:
Hello,
I am trying to run a package check on windows 10.
But it fails with the following errors:
```
$ R CMD check prolfqua_0.1.5.3.tar.gz
During startup - Warning message:
Setting LC_CTYPE=en_US.UTF-8 failed
* using log directory
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