you have any difficulties.
>
>
> Cheers,
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
perfect! thanks a lot
2018-05-16 10:32 GMT-04:00 Martin Morgan <martin.mor...@roswellpark.org>:
>
>
> On 05/16/2018 10:23 AM, Nicolas Descostes wrote:
>
>> Dear Martin,
>>
>> I am starting using BiocInstaller. Regarding the BiocManager::valid(),
>&g
Dear Martin,
I am starting using BiocInstaller. Regarding the BiocManager::valid(),
would it be possible to retrieve a list with one element being a vector of
the packages to update? or to run BiocManager() as we do with biocLite()?
I would find it easier then copying/pasting the suggested
ckage.
>
>
>
> Cheers,
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --------
Dear all,
I am using htseqtools on the devel version and I get the following error
when using giniCoverage:
test <- lapply(endoExoBamlist, function(bam_files){
return(lapply(bam_files, function(bamfile){
ga <- if(paired)
t; Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of
> Nicolas Descostes <nicolas.descos...@gmail.com>
> *Sent:* Thursday, May 10, 2018 5:44:43 PM
> *To:* bioc-devel@r-project.org
> *Subj
Hi,
I am using R-devel with R 3.5 as my package will be released with this
version.
I want to make sure that I am using the latest version of all packages:
library("BiocInstaller")
biocValid()
Installed Built ReposVer
airway "0.112.0" "3.4.3"
Dear Community,
I have done a commit the 11th of April that does not appear anywhere. My
package is ChIPSeqSpike and the last push should be 0.99.22.
The build report indicates:
*ChIPSeqSpike
<http://bioconductor.org/packages/3.7/bioc/html/ChIPSeqSpike.html> 0.99.21*
Nicolas Descoste
Dear community,
When my package ChIPSeqSpike was accepted, I have been noticed that no
further action was required regarding my github (
https://github.com/descostesn/ChIPSeqSpike).
I did two commits with version bump yesterday and I did not receive any
notification. I checked the version at
Dear Bioconductor community,
When developing further a package, is the best practice to create a branch
and bump the version when a full new feature is merged or to stay on the
master without bumping when committing temporarily? More generally, When do
you usually bump a version?
Thank you.
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