Re: [Bioc-devel] [ext] Re: RCAS build error on Nebbiolo2 - Missing BiocManager

2023-10-30 Thread bora.u...@mdc-berlin.de
ge exactly checkSeqDb('hg19') is trying to install but that is what should be listed in Suggests instead of BiocManager. That way it won't be reinstalled over and over again by 'R CMD check'. Best, H. On 10/27/23 05:56, bora.u...@mdc-berlin.de<mailto:bora.u...@mdc-berlin.de> wrote: H

[Bioc-devel] RCAS build error on Nebbiolo2 - Missing BiocManager

2023-10-27 Thread bora.u...@mdc-berlin.de
Hi Bioc-Devel Team, My package RCAS has been getting build errors on Nebbiolo2. It fails to run the tests/examples/vignettes all due to a missing dependency, which can’t be installed because BiocManager is not available. Here is the build report:

Re: [Bioc-devel] Package failure due to GenomicFeatures update

2017-10-23 Thread bora.u...@mdc-berlin.de
-project.org Subject: Re: [Bioc-devel] Package failure due to GenomicFeatures update Hi Bora, I just fixed this in GenomicFeatures 1.29.15. The error on the build report won't clear until Tuesday Oct 24 though. Cheers, H. On 10/22/2017 02:59 PM, bora.u...@mdc-berlin.de wrote: > Hi, >

[Bioc-devel] Package failure due to GenomicFeatures update

2017-10-22 Thread bora.u...@mdc-berlin.de
, Berlin, Germany Building 89, Room 1.08 web: http://bioinformatics.mdc-berlin.de/team.html#bora-uyar-phd email: bora.u...@mdc-berlin.de<mailto:bora.u...@mdc-berlin.de> office tel: +49 30 9406 1802 [[alternative HTML version deleted]]