Dear R-developers,
I came to a somewhat unexpected behaviour of read.csv() which is trivial but
worthwhile to note -- my data involves a protein named "1433E" but to save
space I drop the quote so it becomes,
Gene,SNP,prot,log10p
YWHAE,13:62129097_C_T,1433E,7.35
Hi Mike, Shota and all,
Upon update to Firefox 110 (ahead of the nightly 112) this morning the bug is
also fixed.
BW,
Jing Hua
From: R-package-devel on behalf of jing
hua zhao
Sent: 10 February 2023 22:06
To: Mike Blazanin ; Shota Ochi
Cc: r-package-devel@r
The problem has been around for a while for me and thank you for raising it --
esp. with a fix!
Jing Hua
From: Mike Blazanin
Sent: 10 February 2023 16:29
To: Shota Ochi
Cc: jing hua zhao ; r-package-devel@r-project.org
Subject: Re: [R-pkg-devel] CRAN Vignette
This is apparently due to compression as needed fort package building, e.g., R
CMD build --compact-vignettes=both --md5 --resave-data --log gap so mine has
the same problem: https://cran.r-project.org/web/packages/gap/vignettes/jss.pdf
From: R-package-devel on
: jing hua zhao
Sent: 10 March 2022 10:45
To: R-devel
Subject: Re: Compiling error with glmnet and nloptr
Just a note that I used R 4.1.2 and with R 4.1.3 I had the same issues
nevertheless I was able to go through with (not entirely sure preferable)
nloptr once abs() is changed into fabs
Dear All,
I haven't been able to compile the latest glmnet and nloptr from CRAN wth the
following error messages,
glmnet:
elnet_exp.cpp:141:59: required from here
glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_base.hpp:90:39: error:
'self' was not declared in this scope
a driver
program to pan.f and debug without R but before doing that any idea/insight
would be greatly appreciated.
Thank you so much,
Jing Hua Zhao
[[alternative HTML version deleted]]
__
R-devel@r-project.org mailing list
https
)
prob2 = np.log(2.5e-50)
prob12 = np.logaddexp(prob1, prob2)
prob12
np.exp(prob12)
As expected they are in good agreement with R.
Best regards,
Jing Hua
From: Martin Maechler
Sent: 24 June 2019 09:29
To: jing hua zhao
Cc: William Dunlap; Martin Maechler; r
>
https://docs.scipy.org/doc/scipy-0.14.0/reference/generated/scipy.misc.logsumexp.html
>>
>> I don't know where this has been implemented in the R ecosystem, but
>> this sort of computation is the basis of the "Brobdingnag" package for
>> operating on very l
: peter dalgaard
Sent: 21 June 2019 16:24
To: jing hua zhao
Cc: Rui Barradas; r-devel@r-project.org
Subject: Re: [Rd] Calculation of e^{z^2/2} for a normal deviate z
You may want to look into using the log option to qnorm
e.g., in round figures:
> log(1e-300)
[1] -690.7755
> qnorm(-691, log=TRU
Dear Rui,
Thanks for your quick reply -- this allows me to see the bottom of this. I was
hoping we could have a handle of those p in genmoics such as 1e-300 or smaller.
Best wishes,
Jing Hua
From: Rui Barradas
Sent: 21 June 2019 15:03
To: jing hua zhao; r
Dear R-developers,
I am keen to calculate exp(z*z/2) with z=qnorm(p/2) and p is very small. I
wonder if anyone has experience with this?
Thanks very much in advance,
Jing Hua
[[alternative HTML version deleted]]
__
R-devel@r-project.org
ith
https://www.stats.ox.ac.uk/pub/bdr/gcc9/README.txt and those specification
might as well used in --configure-args above.
Besst regards,
Jing Hua
From: R-devel on behalf of jing hua zhao
Sent: 29 May 2019 15:49
To: r-devel@r-project.org
Subject: [Rd] use of buffers
A bit clarification -- tools::compactPDF() worked on the PDF at the current
directory for me -- not sure about building PDF on the fly.
From: R-devel on behalf of jing hua zhao
Sent: 08 July 2018 16:00
To: Søren Højsgaard; r-devel@r-project.org
Subject: Re
Ｉdid this inside R; not ideal but worked.
From: R-devel on behalf of Søren Højsgaard
Sent: 08 July 2018 15:46
To: r-devel@r-project.org
Subject: Re: [Rd] [R] consider running tools::compactPDF(gs_quality = "ebook")
Dear all,
I run
R CMD build
The 2015 does contain three files.
From: jing hua zhao <jinghuaz...@hotmail.com>
Sent: 10 February 2017 00:13
To: r-devel@r-project.org
Subject: issue with unz()?
Dear R-devel,
url0514 <-
"http://data.dft.gov.uk.s3.amazonaws.com/road-acciden
Dear All,
I would like to seek advice regarding .Fortran as I was referred to a query
about package pan that the sets of results may alternate between iterations.
For reference I have extracted the relevant Fortran as with the R code below.
Note several packages based on JL Schafter's S-PLUS
From: x...@yihui.name
Date: Tue, 27 Mar 2012 16:40:04 -0500
To: r-devel@r-project.org
Subject: Re: [Rd] CRAN policies
I have been wondering if it is possible to automate the checking
process to reduce human efforts, e.g. automatically check the packages
submitted to FTP, and send the
Dear R-developers,
I am wondering if it is possible to add bookmarks automatically to individual
figures for pdf() when multiple figures are produced? If so, it would be very
handy.
Best regards,
Jing Hua
[[alternative HTML version
Hi Terry,
Not aware about the issue, e.g., from
$ uname -a
Linux c06.mrc-epid.private.cam.ac.uk 2.6.9-89.0.23.ELsmp #1 SMP Fri Mar 5
23:27:13 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
I got
library(kinship)
Loading required package: survival
Loading required package: splines
Loading required
Dear R developers,
I ran into some problems that I wish to get around.
Following the recommendation from Building R for Windows (Duncan's site) I
was able to obtain some files from Brian's site for relevant tools for
cross-compile. Initially I was able to cross-compile Windows packages
On 26.04.2010 12:55, jing hua zhao wrote:
Dear R developers,
I ran into some problems that I wish to get around.
Following the recommendation from Building R for Windows (Duncan's site)
I was able to obtain some files from Brian's site for relevant tools for
cross-compile
Feb 2008 13:04:58 -0800
From: [EMAIL PROTECTED]
To: [EMAIL PROTECTED]
CC: [EMAIL PROTECTED]
Subject: Re: [Rd] pnorm
On Thu, 7 Feb 2008, jing hua zhao wrote:
I calculated a two-sided p values according to 2*(1-pnorm(8.104474)),
which gives 4.440892e-16. However, it appears to be 5.30E
Dear R list,
I calculated a two-sided p values according to 2*(1-pnorm(8.104474)), which
gives 4.440892e-16. However, it appears to be 5.30E-16 by a colleague and
5.2974E-16 from SAS. I tried to get around with mvtnorm package but it turns
out to be using pnorm for univariate case. I should
Here is what I noted down for our system.
To reset src/gnuwin32/MkRules as appropriate
BUILD=CROSS## if cross-building, is this gcc3 or gcc4?CROSS-GCC=gcc3
R_EXE='/home/jhz22/RCrossBuild/LinuxR/bin/R' Date: Thu, 11 Oct 2007 11:15:08
+0100 From: [EMAIL PROTECTED] To: [EMAIL PROTECTED] Subject:
Dear R-devlopers,
I am experiencing problem with R 2.2.0 after installing Oracle 10g on my
Windows XP system. It simply crashes but Rgui appears to be functioning.
After I deinstalling Oracle 10g, R.exe start to function again. Any idea how
to make them both working?
Many thanks,
Jinghua
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