[Rd] Time to add is.formula() to 'stats'?

2023-04-07 Thread Mikael Jagan
I know that it has been discussed in the past, but I wanted to ask to revisit the idea of exporting is.formula <- function(x) inherits(x, "formula") from 'stats', parallel to is.data.frame() in 'base', given how widely formulae are used these days in conjunction with data frames, even

[R-pkg-devel] Changing R Package Maintainer

2023-04-07 Thread Andrew Simmons
Hi, I'm changing my name and my email address. I've got an update I'd like to submit to CRAN, I've changed my name and email in my DESCRIPTION. I couldn't find any details about changing maintainers in the R manuals unfortunately. Someone online said to just submit the update, CRAN will send

Re: [R-pkg-devel] Changing R Package Maintainer

2023-04-07 Thread Hadley Wickham
Just submit your package, and you'll get an automated email to the old address. Hadley On Sat, Apr 8, 2023 at 7:14 AM Andrew Simmons wrote: > > Hi, > > > I'm changing my name and my email address. I've got an update I'd like to > submit to CRAN, I've changed my name and email in my DESCRIPTION.

Re: [R-pkg-devel] Changing R Package Maintainer

2023-04-07 Thread Uwe Ligges
On 07.04.2023 21:14, Andrew Simmons wrote: Hi, I'm changing my name and my email address. I've got an update I'd like to submit to CRAN, I've changed my name and email in my DESCRIPTION. I couldn't find any details about changing maintainers in the R manuals It is in the CRAN policies.

[R-pkg-devel] Missing quadmath library in r-release-macosx-arm64

2023-04-07 Thread Merlise Clyde, Ph.D.
I was checking the CRAN check page for my package BAS https://cran.r-project.org/web/checks/check_results_BAS.html and saw that there has been an ERROR in the check status for r-release-macosx-arm64 for (at least) the last 2 days. Looking at the check results linked there the package fails

[Bioc-devel] Fwd: philr problems reported in the Multiple platform build/check report for BioC 3.17

2023-04-07 Thread Justin Silverman
Hello helpful list. I have repeatedly got the following email over the past few weeks. At first I thought it was a false positive as the error in question was fixed a while back. But I keep receiving this email. I have asked a few colleagues to try to test out the package and run R CMD CHECK

Re: [Bioc-devel] Fwd: philr problems reported in the Multiple platform build/check report for BioC 3.17

2023-04-07 Thread Robert M. Flight
Hi Justin, I pulled the Bioconductor devel docker image ( https://www.bioconductor.org/help/docker/#intro), fired it up, and installed your github version of philr. And run the vignette. And I can reproduce the error: > Error in philr.data.frame(otu.table, tree = tree, ...) : > > Zero values

Re: [Bioc-devel] Fwd: philr problems reported in the Multiple platform build/check report for BioC 3.17

2023-04-07 Thread Oleksii Nikolaienko
Hi, looks like the latest commit to the relevant code in package mia has changed the arguments of makePhyloseqFromTreeSummarizedExperiment

Re: [Bioc-devel] Fwd: philr problems reported in the Multiple platform build/check report for BioC 3.17

2023-04-07 Thread Justin Silverman
Thank you both so much! @Robert, thank you for introducing me to the docker containers, that was super helpful. @Oleksii, you were spot on in terms of the problem. Thank you! Should be fixed. Best, Justin ___ Bioc-devel@r-project.org mailing list