Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

On Fri, Apr 26, 2024 at 1:06 PM Ivan Krylov wrote: > > On Fri, 26 Apr 2024 12:32:59 +0200 > Martin Maechler wrote: > > > Finally, I'd think it definitely would be nice for > > install.packages("Matrix") to automatically get the correct > > Matrix version from CRAN ... so we (R-core) would be

Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

On Fri, 26 Apr 2024 12:32:59 +0200 Martin Maechler wrote: > Finally, I'd think it definitely would be nice for > install.packages("Matrix") to automatically get the correct > Matrix version from CRAN ... so we (R-core) would be grateful > for a patch to install.packages() to achieve this Since

[Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

I don't know if this is a bug, but it is certainly weird. AFAICT R 4.4.0 has Matrix 1.7-0. However, currently CRAN has Package: Matrix Version: 1.6-5 Priority: recommended Depends: R (>= 3.5.0), methods ... (plus another version for R >= 4.5.0 only). Which has some weird consequences, e.g. if

Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

> Gábor Csárdi > on Fri, 26 Apr 2024 11:55:36 +0200 writes: > I don't know if this is a bug, but it is certainly weird. AFAICT R > 4.4.0 has Matrix 1.7-0. Yes, it *is* available from CRAN: You can see it when looking into the 4.4.0/ , specifically the

Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

On Fri, 26 Apr 2024, at 11:32 AM, Martin Maechler wrote: >> Gábor Csárdi >> on Fri, 26 Apr 2024 11:55:36 +0200 writes: > > > I don't know if this is a bug, but it is certainly weird. AFAICT R > > 4.4.0 has Matrix 1.7-0. > > Yes, it *is* available from CRAN: You can see it

Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

On Fri, 26 Apr 2024 13:15:47 +0200 Gábor Csárdi wrote: > That's not how this worked in the past AFAIR. Simply, the packages in > the x.y.z/Recommended directories were included in > src/contrib/PACKAGES*, metadata, with the correct R version > dependencies, in the correct order, so that

Re: [Rd] R 4.4.0 has version of Matrix 1.7-0, but it's not available on CRAN

Everyone, take a deep breath - there have been many disruptions in last few days - some obvious, others associated with the R release and the BioC disruptions on CRAN, so there is no need to panic and start devising "solutions" for issues that are temporary. Things are being sorted out and some

[R-pkg-devel] Extending proj with proj.line3d methods and overloading the methods

Dear List-Members, I try to implement a proj.line3d method and to overload this method as follows: proj.line3d <- function(p, x, y, z, ...) UseMethod("proj.line3d") proj.line3d.numeric = function(p, x, y, z, ...) { # ... } proj.line3d.matrix = function(p, x, y, z, ...) { # ... } The

Re: [Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed

We will un-deprecate once the package is building and checking cleanly. We will look at today's build report when it is posted. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo,

Re: [Bioc-devel] Error on macOS (merida1)

Yes a package in submission should depend on R 4.4.0. Merida1 was accidently started for the package review process but should not have been included yet. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm &

[Bioc-devel] Error on macOS (merida1)

Dear Bioconductor Team, I pushed my updates for the package zitools a few days ago. However, there is an error on macOS merida1: ERROR: this R is version 4.3.3, package 'zitools' requires R >= 4.4.0. On Linux (nebbiolo1) is everything fine. Is that a problem? Because as far as I understood,

Re: [Bioc-devel] Fixed error on gemma.R

You're package will still be included in the release. We stress this deadline as packages that need bug corrections after the release would need to push to both branches. And any changes made last minute are not guaranteed to have a build report before we branch. Please keep an eye on the

[Bioc-devel] Fixed error on gemma.R

Hi, I am the maintainer of gemma.R package. The latest test came up with an error due to a sporadic server issue. I have included a fix in a last push to try to