Dear bioc-devel,
I am sorry for not being responsive to the error messages related to the
building of motifbreakR.
As you can likely see, I was responsive to errors earlier in the year, entering
many changes to keep up to date with the changing conditions of the Bioc
universe, and bugs that I
On 27 June 2023 at 15:36, Carl Boettiger wrote:
| tools::R_user_dir() provides configurable directories for R packages
| to write persistent information consistent with standard best
| practices relative to each supported operating systems for
| applications to store data, config, and cache
tools::R_user_dir() provides configurable directories for R packages
to write persistent information consistent with standard best
practices relative to each supported operating systems for
applications to store data, config, and cache information
respectively. These standard best practices
To get rid of the BiocStyle you need to add BiocStyle to your DESCRIPTION in
the suggests field.
To have the changes be on the release branch, you need to alter and push
changes on RELEASE_3_17 branch of git.bioconductor.org instead of to devel on
git.bioconductor.org.
See:
Dear Bioconductor Team,
I have been trying to fix my package that was failing in Bioconductor due
to a warning (not an error) on the code. I updated my github and try to
push the changes to Bioconductor, and for some reason, I cannot update the
main one.
As you can see, my last push to the dev
On Tue, 27 Jun 2023 at 18:45, Jeff Newmiller wrote:
>
> if (any(c( "alaska", "hawaii") %in% zoom)){}
Note that this changes behavior. If e.g. zoom is c("something",
"alaska"), the code above returns TRUE. Previous behavior was FALSE
(with a warning).
Iñaki
> On June 27, 2023 9:11:09 AM PDT,
if (any(c( "alaska", "hawaii") %in% zoom)){}
On June 27, 2023 9:11:09 AM PDT, "Göran Broström" wrote:
>
>
>Den 2023-06-27 kl. 17:17, skrev Göran Broström:
>> If(zoom %in% c(“alaska”, “hawaii”)…
>
>Wrong, maybe
>
>if (("alaska" %in% zoom) || ("hawaii" %in% zoom)){}
>
>
>>
>> Göran
>>
>>> 27
Den 2023-06-27 kl. 17:17, skrev Göran Broström:
If(zoom %in% c(“alaska”, “hawaii”)…
Wrong, maybe
if (("alaska" %in% zoom) || ("hawaii" %in% zoom)){}
Göran
27 juni 2023 kl. 16:32 skrev arilamst...@gmail.com:
It appears that my R package choroplethr broke due to this change in R
If(zoom %in% c(“alaska”, “hawaii”)…
Göran
> 27 juni 2023 kl. 16:32 skrev arilamst...@gmail.com:
>
> It appears that my R package choroplethr broke due to this change in R
> 4.3.0:
>
> CHANGES IN R 4.3.0:
>
> SIGNIFICANT USER-VISIBLE CHANGES:
>
> Calling && or || with LHS or (if evaluated)
On Tue, 27 Jun 2023 at 16:31, wrote:
>
> It appears that my R package choroplethr broke due to this change in R
> 4.3.0:
>
> CHANGES IN R 4.3.0:
>
> SIGNIFICANT USER-VISIBLE CHANGES:
>
> Calling && or || with LHS or (if evaluated) RHS of length greater than one
> is now always an error, with a
It appears that my R package choroplethr broke due to this change in R
4.3.0:
CHANGES IN R 4.3.0:
SIGNIFICANT USER-VISIBLE CHANGES:
Calling && or || with LHS or (if evaluated) RHS of length greater than one
is now always an error, with a report of the form
'length = 4' in coercion to
The Bioconductor Team is continuing to identify packages that will be
deprecated in the next release to allow for the Bioconductor community to
respond accordingly. This is the current list of deprecated packages for Bioc
3.17:
Software:
Unresponsive:
* baySeq
* BGmix
* BioMM
Hi,
Last week we updated R from 4.3.0 to 4.3.1 with empty site-library/ folder.
All packages are being re-installed and some of them timed out.
I just checked and both klaR and org.Hs.eg.db are installed. Please
re-check the results later today!
Regards,
Martin
On Tue, Jun 27, 2023 at 11:25 AM
Dear Bioconductor Community,
In BioC 3.18 build/check, kunpeng2 linux ARM64 reports this error:
ERROR: dependencies ‘klaR’, ‘org.Hs.eg.db’ are not available for package
‘SVMDO’
Is this a kunpeng2 related problem?
___
Bioc-devel@r-project.org
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