Re: [Rd] Part of fastpass in 'sort.list' can make sorting unstable

Thanks -- fixed in R-devel and R-3-5-branch. luke On Fri, 6 Apr 2018, Suharto Anggono Suharto Anggono via R-devel wrote: In the code of functions 'order' and 'sort.list' in R 3.5.0 alpha (in https://svn.r-project.org/R/branches/R-3-5-branch/src/library/base/R/sort.R), in "fastpass, take

Re: [Rd] file.copy(from=Directory, to=File) oddity

Thanks for the report, fixed in R-devel. Now we get a warning when copying a directory over a non-directory file is attempted. The target (non-directory) file is left alone. Tomas On 09/08/2017 06:54 PM, William Dunlap via R-devel wrote: When I mistakenly use file.copy() with a directory for

Re: [Rd] [bug report] Cyrillic letter "я" interrupts script execution via R source function

Hi Vladimir, thanks for your report - this was really a bug, now fixed in R-devel and to appear in 3.5.0. Apart from the bug, having source files in UTF-8 and reading them into R on Windows is perfectly fine, you just need to specify that they are in UTF-8. You also need to make sure R is

Re: [Rd] [bug report] Cyrillic letter "я" interrupts script execution via R source function

Hi Patrick, thanks for your comments on the bug, just to clarify - one could reproduce the bug simply using file() and readLines(). The parser saw a real end of file as (incorrectly) communicated to it by lower level connections code - there is no design issue related in the parser (nor

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear Martin, On Fri, 06-April-2018, at 18:59:00, Martin Morgan wrote: > On 04/06/2018 10:44 AM, Lluís Revilla wrote: >> I have recently faced a similar warning. >> This is when a link to a help page of another package is broken (there is >> not such help page).

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

> Ramon Diaz-Uriarte > on Mon, 9 Apr 2018 16:51:38 +0200 writes: > Dear Martin, > On Fri, 06-April-2018, at 18:59:00, Martin Morgan > wrote: >> On 04/06/2018 10:44 AM, Lluís Revilla wrote: >>> I have recently

Re: [Bioc-devel] vignette problems

I'll try to provide you with a pull request addressing issues. Martin On 04/09/2018 08:42 AM, campos wrote: Dear devel team, I am still puzzled with the problems with mac compiling. I am really lost and have no idea how to continue or how to be able to check about this problems with my linux

[Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

> "Once your package builds and checks without errors or (avoidable) warnings, > a Bioconductor team member will provide a technical review of your package. > Other Bioconductor developers and users with domain expertise are encouraged > to provide additional community commentary. Reviewers

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Hi Paul -- I am trying to build your vignette but it has load("~/s/work/priceLab/AD/tbl.gwas.level_1.RData") I think it should be possible to get your package through check, but I would like to get the vignette built and check out the tests before commenting further. On Mon, Apr 9, 2018 at

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Hi Vince, My dumb mistake, sorry. Now fixed, version 0.99.9, https://github.com/paul-shannon/IGV I’m looking forward to hearing your suggestions. - Paul > On Apr 9, 2018, at 4:49 PM, Vincent Carey wrote: > > Hi Paul -- I am trying to build your vignette but

Re: [Bioc-devel] new package IGV needs web browsers on the build machines to pass build & check

Thanks Paul. Package works. Browser visualizations look really nice. I tried to run your unit tests and they use a function called "printf". Setting printf = sprintf allowed the tests to all run to completion. The following vignette chunk is problematic ... maybe you meant eval=FALSE,

Re: [Bioc-devel] Update of miRBaseVersions.db annotation package

The package looks okay now. I've moved the package onto our devel builder and it should propagate within a day or two. From: Stefan Haunsberger Sent: Saturday, April 7, 2018 9:36:02 AM To: Van Twisk, Daniel Cc:

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On 04/09/2018 10:51 AM, Ramon Diaz-Uriarte wrote: Dear Martin, On Fri, 06-April-2018, at 18:59:00, Martin Morgan wrote: On 04/06/2018 10:44 AM, Lluís Revilla wrote: I have recently faced a similar warning. This is when a link to a help page of another

Re: [Bioc-devel] vignette problems

Dear devel team, I am still puzzled with the problems with mac compiling. I am really lost and have no idea how to continue or how to be able to check about this problems with my linux machine in order to fix it faster. Could you please help me with that?? Best, Rafael On 05.04.2018 14:29,