On Dec 11, 2009, at 1:20 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 11:51 AM, Steve Lianoglou
mailinglist.honey...@gmail.com wrote:
On Dec 11, 2009, at 12:36 PM, Peng Yu wrote:
[snip]
What seems confusing to me is:
even 'x[i]-list(NULL)' and 'x[[i]]-list(NULL)' are different, why
Hello Karuna,
Christian answer was great and very detailed.
One more approach you might want to try is using the K-medoids algorithm
instead of the K-means.
That can be used through the pam command (from the cluster package)
See more here:
Dear R family
I have a following question.
Suppose I have a matrix as follows, for instance:
tau=
0 1 0 0 0
0 0 1 0 0
0 0 0 1 0
0 0 0 0 1
1 0 0 0 0
I want to calculate (-m) power of tau, for example, m=893.
When I run tau^2, the outcome is just tau.
Any help would be appreciated.
Hello
On 12/11/09, Schwan s.s.hosse...@utwente.nl wrote:
However, I dont know how to tell R that it just should look for e.g.
author,keywords and year and how to plot these for example on x axis the
author and y axis the keywords and on z axis the year?
I suggest that you try to get going
Hi,
On Dec 11, 2009, at 2:01 PM, Moohwan Kim wrote:
Dear R family
I have a following question.
Suppose I have a matrix as follows, for instance:
tau=
0 1 0 0 0
0 0 1 0 0
0 0 0 1 0
0 0 0 0 1
1 0 0 0 0
I want to calculate (-m) power of tau, for example, m=893.
When I run tau^2,
From: r-help-boun...@r-project.org
[mailto:r-help-boun...@r-project.org] On Behalf Of Moohwan Kim
Sent: Friday, December 11, 2009 11:01 AM
To: r-help@r-project.org
Subject: [R] How to calculte the power of a matrix
Dear R family
I have a following question.
Suppose I have a matrix
On Fri, Dec 11, 2009 at 10:24 AM, Peng Yu pengyu...@gmail.com wrote:
How do you figure out all the possibilities?
Well, the Value section of the third party function's help page should
outline the return types it produces. If it doesn't cover all cases, write
a letter to the package
I would study the third party function and learn all the types it can return.
After all if you don't know what type it's going to return, how can
you possibly make *any* confident use of its output?
Do you actually have this situation? A third part function that is so
poorly documented that
One approach is to sample from a non-truncated inverse gamma, then if the
observation is in the part you want truncated, throw it away and generate a new
value.
--
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.s...@imail.org
801.408.8111
-Original
Dear List,
Is it possible to simulate a time-series in R based on 1/f noise?
Many Thanks
Enrico Crema
---
Enrico R. Crema
PhD Candidate
Institute of Archaeology, UCL
AHRC Centre for the Evolution of Cultural Diversity, UCL
Centre for Advanced Spatial Analysis,
Dear all,
I would be very grateful if you could help me with:
Given the regularized gamma function Reg=int_0^r (x^(k-1)e^(-x))dx/int_0^Inf
(x^(k-1)e^(-x))dx ; 0rInf (which is eventually the ratio of the
Incomplete gamma function by the gamma function), does anyone know of a package
in R that
Dear all
I have tried several times to make and install an R package that i created.
However, whenever i get to the last step and try to install the package i get
the following error:
C:\Rtools\binrcmd install C:\program files\R\R-2.9.2\bin\Test_1.0.tar.gz
Can't open perl script
Hi, again. False alarm, I thought I'd call lattice.demo() as a quick check of
my install, but that was a bad idea and the errors were a red herring.
Looked at you HWidentify() directly and now I get it - thanks!
Doug
Greg Snow-2 wrote:
There are 2 functions in the development version of the
Greg, I tried installing v2.5 using the instructions on R-forge but ran into
errors:
install.packages(TeachingDemos, repos=http://R-Forge.R-project.org;)
Warning: unable to access index for repository
http://R-Forge.R-project.org/bin/windows/contrib/2.10
Warning message:
In
Hello,
I am analyzing time-series data for multiple songbird species in northern
Canada where data were collected at 3 point count stations within a stand
(~150 stations) visited twice a year and with multiple observers. I am using
a linear mixed effects model (lme4) that includes year as a
Frank E Harrell Jr wrote:
Rodrigo wrote:
Hi,
I´m trying to use the calibrate function from rms package (made by prof.
Harrell) after fitting a model using cph. But it returns the following
error
message:
calibrate(modelo1,B=200,bw=F,u=13)
Using Cox survival estimates at 13 Days
I can think of many brute-force ways to do this outside of R, but was
wondering if there was a simple/elegant solution within R instead.
I have a table that looks something like the following:
Factor1 Factor2 Value
A 11/11/2009 5
A 11/12/2009 4
B 11/11/2009
The query was why survreg() with a cluster() statement fails.
The answer: a bug. A call to resid() preceded setting the class of the
result to 'survreg'.
I am currently adding another case to the test suite so that this does
not happen again, and to formally validate that the numeric
Rodrigo wrote:
Frank E Harrell Jr wrote:
Rodrigo wrote:
Hi,
I´m trying to use the calibrate function from rms package (made by prof.
Harrell) after fitting a model using cph. But it returns the following
error
message:
calibrate(modelo1,B=200,bw=F,u=13)
Using Cox survival estimates at
At 8:19 AM -0600 12/11/09, Mark Na wrote:
Hello,
I am learning how to use functions, but I'm running into a roadblock.
I would like my function to do two things: 1) convert an object to a
dataframe, 2) and then subset the dataframe. Both of these commands work
fine outside the function, but I
On Fri, 11 Dec 2009, GL wrote:
I can think of many brute-force ways to do this outside of R, but was
wondering if there was a simple/elegant solution within R instead.
I have a table that looks something like the following:
Factor1 Factor2 Value
A 11/11/2009 5
A
Hi all,
Imagine I have a matrix and the first colum is a list that repeats the same
names, I want to sum the second column on each unique name on first column.
Imagine this:
Pepe 2
Pepe 3
Pepe 4
Jose 2
Jose 5
Manuel 4
Manuel 2
I want to make a new matrix that calculates and recognizes that
On Fri, Dec 11, 2009 at 2:50 PM, Don MacQueen m...@llnl.gov wrote:
I would study the third party function and learn all the types it can
return.
After all if you don't know what type it's going to return, how can you
possibly make *any* confident use of its output?
Do you actually have this
On Fri, Dec 11, 2009 at 2:37 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Fri, Dec 11, 2009 at 10:24 AM, Peng Yu pengyu...@gmail.com wrote:
How do you figure out all the possibilities?
Well, the Value section of the third party function's help page should
outline the return types it
One approach would be to use expand.grid to generate all combinations
and then match against what you have.
A short example:
#generate data - two factors - 4 levels in factor1, 26 levels in factor2
df - data.frame(factor1 = sample(LETTERS[1:4], 100, replace=T),
factor2 = sample(letters,
On Dec 11, 2009, at 4:45 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 2:37 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Fri, Dec 11, 2009 at 10:24 AM, Peng Yu pengyu...@gmail.com wrote:
How do you figure out all the possibilities?
Well, the Value section of the third party
On Fri, Dec 11, 2009 at 3:49 PM, Steve Lianoglou
mailinglist.honey...@gmail.com wrote:
On Dec 11, 2009, at 4:45 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 2:37 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Fri, Dec 11, 2009 at 10:24 AM, Peng Yu pengyu...@gmail.com wrote:
How do you
Hi all I want to make a copy about R in a external disk.
How many bytes will occupe if I could dowload all disposable libraries?
Is it possible? How should I proceed?
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
On Dec 11, 2009, at 4:38 PM, Jose Narillos de Santos wrote:
Hi all,
Imagine I have a matrix and the first colum is a list that repeats
the same
names, I want to sum the second column on each unique name on first
column.
Imagine this:
Pepe 2
Pepe 3
Pepe 4
Jose 2
Jose 5
Manuel 4
Manuel 2
Hi Jose,
Here is a suggestion using tapply():
R x - read.table(textConnection(Pepe 2
+ Pepe 3
+ Pepe 4
+ Jose 2
+ Jose 5
+ Manuel 4
+ Manuel 2), header = FALSE)
R closeAllConnections()
R x
V1 V2
1 Pepe 2
2 Pepe 3
3 Pepe 4
4 Jose 2
5 Jose 5
6 Manuel 4
7 Manuel 2
R
R
R
On Dec 11, 2009, at 4:56 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 3:49 PM, Steve Lianoglou
mailinglist.honey...@gmail.com wrote:
On Dec 11, 2009, at 4:45 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 2:37 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Fri, Dec 11, 2009 at 10:24 AM,
On Dec 11, 2009, at 4:56 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 3:49 PM, Steve Lianoglou
mailinglist.honey...@gmail.com wrote:
On Dec 11, 2009, at 4:45 PM, Peng Yu wrote:
On Fri, Dec 11, 2009 at 2:37 PM, Charlie Sharpsteen
ch...@sharpsteen.net wrote:
On Fri, Dec 11, 2009 at 10:24
Enrico R. Crema enrico.crema at gmail.com writes:
Dear List,
Is it possible to simulate a time-series in R based on 1/f noise?
http://people.biology.ufl.edu/bolker/landsc.html
gives some information on simulating fractal landscapes.
I think you could treat a 1-D landscape as a time
Good evening
I often have as output from simulations a list of various values, vectors
and matrices.
Supposing that I then run said simulation several times, I often want to
extract a particular result from each simulation for plotting and,
ideally, put it in a matrix.
A simple example
v1 - 1:5
jjh jjharden at gmail.com writes:
I am running the lmer() command in a for loop and occasionally a particular
iteration is producing the false convergence warning. I would like to be
able to mark these iterations with a dummy variable, but I can't find any
other notification besides the
Sorry about the last question I ´m reading the solution. Sorry again.
2009/12/11 Jose Narillos de Santos narillosdesan...@gmail.com
Hi all I want to make a copy about R in a external disk.
How many bytes will occupe if I could dowload all disposable libraries?
Is it possible? How should I
Jennifer -
Does this do what you want?
v1 = sapply(output,'[[','vec')
v2 = sapply(output,'[[','other')
v1
[,1] [,2]
[1,]16
[2,]27
[3,]38
[4,]49
[5,]5 10
v2
[1] stuff stuff
(in more readable form:
v1 = sapply(output,function(x)x$vec)
v2 =
oh.. and i just saw the bonus part... just replace lapply() by sapply().
b
On Dec 11, 2009, at 8:33 PM, Jennifer Young wrote:
Good evening
I often have as output from simulations a list of various values, vectors
and matrices.
Supposing that I then run said simulation several times, I
On Dec 11, 2009, at 5:33 PM, Jennifer Young wrote:
Good evening
I often have as output from simulations a list of various values,
vectors
and matrices.
Supposing that I then run said simulation several times, I often
want to
extract a particular result from each simulation for plotting
I would be very grateful if you could help me with:
Given the regularized gamma function Reg=int_0^r (x^(k-1)e^(-x))dx/
int_0^Inf (x^(k-1)e^(-x))dx ; 0rInf (which is eventually the ratio
of the
Incomplete gamma function by the gamma function), does anyone know
of a package in R that would
Hi,
I have the following conceptual / interpretative question regarding
random effects:
A mixed effects model was fit on biological data, with observations
coming from different species. There is a clear overall effect of
certain predictors (entering the model as fixed effect), but as
Hi R Experts,
I'm aware of pdf(), jpeg(),... functions. But,
1. Is it also possible to export graphs directly to word or RTF? I use to
copy and paste graphs but resolutions are not so great.
2. Also, is it possible to export your out to word file? I use sink()
function to export it text files.
This is nice; the matching could be shortened by using merge:
### quoted from the previous message
#generate data - two factors - 4 levels in factor1, 26 levels in factor2
df - data.frame(factor1 = sample(LETTERS[1:4], 100, replace=T),
factor2 = sample(letters, 100, replace=T), value =
Please read this:
On Fri, Dec 11, 2009 at 6:28 PM, Wenjie Lee wenjieleemaill...@gmail.comwrote:
Hi R Experts,
I'm aware of pdf(), jpeg(),... functions. But,
1. Is it also possible to export graphs directly to word or RTF? I use to
copy and paste graphs but resolutions are not so great.
You can do this using the package numDeriv.
require(zipfR)
require(numDeriv)
fn - function(x, y) Rgamma.inv(x, y)
gRgamma.inv - function(y, k) sapply(y, function(y) grad(x=k, func=fn, y=y))
plot(gRgamma.inv(y=seq(0,1, length=200), k=1), type=l, xlab=x,
ylab=Derivative of Rgamma.inv w.r.t.
Hi All,
I'm a SAS user but I'm very much interested in learning R.
I use ODS system in SAS to make nice frequency tables. Is it possible to
export the output of table() [in TABULAR FORM]? So, that I can use those
directly for publications? Thank you.
# R Code:
library(datasets)
Orange
Hi Farrel
I have taken a look at the problems using RGoogleDocs to read
spreadsheets and was able to reproduce the problem I believe you
were having. A few minor, but important, changes and I can read
spreadsheets again and apparently still other types of documents.
I have put an updated
On 11/12/2009 7:12 AM, khaz...@ceremade.dauphine.fr wrote:
Hi, all
How can generate a sample from truncated inverse gamma distribution in R?
Using the inverse CDF method or rejection sampling are possible,
depending on what your truncation is like. If your truncation forces
the
On 11/12/2009 8:50 AM, Hao Cen wrote:
Hi,
Is there a way to get the enclosing function name within a function?
You confused me at first with enclosing function, but I think you can
do what you want using something like
f - function() {
print(sys.call()[[1]])
}
f()
Duncan Murdoch
For
Thanks so much for the tips, I was able to use both parse() and eval()... I
found eval(), quote(), bquote() easier and more flexible to use and to pass
as arguments to a function.
I can't say enough that you really made my day! :)
Thanks,
Santosh
On Tue, Dec 1, 2009 at 9:36 AM, baptiste auguie
On 11/12/2009 1:34 PM, Keshk, Omar wrote:
Dear all
I have tried several times to make and install an R package that i created. However, whenever i get to the last step and try to install the package i get the following error:
C:\Rtools\binrcmd install C:\program
At 6:28 PM -0500 12/11/09, Wenjie Lee wrote:
Hi R Experts,
I'm aware of pdf(), jpeg(),... functions. But,
1. Is it also possible to export graphs directly to word or RTF? I use to
copy and paste graphs but resolutions are not so great.
I save graphs as png files, then use Word's Insert
On Dec 11, 2009, at 6:55 PM, Kim Jung Hwa wrote:
library(datasets)
Orange
summary(Orange)
library(xtable)
xtable(summary(Orange))
% latex table generated in R 2.10.1 by xtable 1.5-6 package
% Fri Dec 11 21:39:50 2009
\begin{table}[ht]
\begin{center}
\begin{tabular}{rlll}
\hline
Tree
There are a variety of packages that help format output using either
LaTeX or html. I've grown to prefer the latex() function in the Hmisc
packages, but you might also be interested in xtable (can output
either to LaTeX or html), R2html, or prettyR.
-Ista
On Fri, Dec 11, 2009 at 6:55 PM, Kim
On Dec 11, 2009, at 11:08 AM, Tom Knockinger wrote:
Hi,
i am new to the R-project but until now i have found solutions for
every problem in toturials, R Wikis and this mailing list, but now i
have some problems which I can't solve with this knowledge.
I have some data like this:
#
Thank you David and Ista for your suggestions. I got the latex part.
But, this may be stupid, I got the html code using following command, how
can I make use of it? Thanks anyways.
temp-xtable(summary(Orange))
print(temp, type=html)
!-- html table generated in R 2.9.2 by xtable 1.5-6 package --
On Dec 11, 2009, at 10:48 PM, Kim Jung Hwa wrote:
Thank you David and Ista for your suggestions. I got the latex part.
But, this may be stupid, I got the html code using following
command, how
can I make use of it? Thanks anyways.
On my computer just copying that to a text editor and
It Works! Thanks a lot! Its great.
What were your few minor, but important, changes - in a nutshell. I will
not understand unless you describe it as high level issues.
Farrel Buchinsky
Google Voice Tel: (412) 567-7870
On Fri, Dec 11, 2009 at 19:07, Duncan Temple Lang
hi,everybody:
I want to get the average shifted histogram or ASH for my own data. I choose
to use the package ash to compute the ASH .
But there is NA values in my data, and when using the command bin1 for
computing the bin counts, I was told that the command can't handle NA/NaN/Inf
data.
How
I am trying to graphically represent a large set of data who's result is not
strictly uniform. http://n4.nabble.com/file/n961629/egraph_rules_list_2.png
The scatter plot to the left has all of the data rising in steps however I
know that there are cases within my data that do not fit the dotted
Hello all, I am Xiongqing Zhang, come from Beijing of China. I know you from
the web site: http://finzi.psych.upenn.edu/Rhelp08/2008-February/154627.html.
I am not very clear about the R-project software. But I want to estimate the
parameters and errors of zero-inflation poisson model. Can you
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