[R] Help deciphering segfault in make check

2010-01-19 Thread Karl-Dieter Crisman
Dear R Help, I work with the Sage project, and we are trying to improve the ability to use R through Sage. Most things work, but make check seems to cause problems on certain platforms, and now that we want to upgrade to 2.10.1 I thought we should ask for help! R builds just fine on both Mac

Re: [R] Number of download.

2010-01-19 Thread Liviu Andronic
Hello On Tue, Jan 19, 2010 at 7:51 PM, Christophe Genolini cgeno...@u-paris10.fr wrote: Is there a way to know how many times an R package (on CRAN) has been download ? Recently this page [1] was set up, but it doesn't seem updated for some time now. Liviu [1]

[R] forgot the function to divide a dataset into equal parts

2010-01-19 Thread rusers.sh
Hi, I just cannot remember the R function to divide a dataset into equal parts. And i searched the divide dataset into equal parts in R site, but cannot find it. Anybody can tell me that function. I am just blocked by it. Thanks a lot. -- - Jane Chang Queen's

Re: [R] Number of download.

2010-01-19 Thread David Winsemius
On Jan 19, 2010, at 2:51 PM, Christophe Genolini wrote: Hi the list Is there a way to know how many times an R package (on CRAN) has been download ? No, or at least not a comprehensive number. The question came up and was discussed in March last year. Search term popular.:

Re: [R] Number of download.

2010-01-19 Thread Barry Rowlingson
On Tue, Jan 19, 2010 at 8:23 PM, David Winsemius dwinsem...@comcast.net wrote: On Jan 19, 2010, at 2:51 PM, Christophe Genolini wrote: Hi the list Is there a way to know how many times an R package (on CRAN) has been download ? No, or at least not a comprehensive number. The question came

Re: [R] Remove term from formula for predict.lm

2010-01-19 Thread werner w
Thanks a lot for the answers! Somehow I thought there will be a facility to modify the formula. But setting unwanted variables to zero will of course work and maybe is simple enough. Thanks again! -- View this message in context:

Re: [R] problem with the precision of numbers

2010-01-19 Thread Hans W Borchers
Ted.Harding at manchester.ac.uk writes: [...] I suspect this is an invented computation -- the 3456 strikes me as unlikely (it reminds me of my habitual illustrative use of set.seed(54321)). There is a definite problem with the development given by kayj. When k=2000 and i=k, the

Re: [R] Symmetric Matrix classes

2010-01-19 Thread Douglas Bates
On Tue, Jan 19, 2010 at 9:26 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Scanning for 'Matrix' in old R-help e-mail, I found GA == Gad Abraham gabra...@csse.unimelb.edu.au     on Fri, 27 Nov 2009 13:45:00 +1100 writes:    GA Hi,    GA I'd like to store large covariance matrices

Re: [R] problem of data manipulation

2010-01-19 Thread hadley wickham
On Mon, Jan 18, 2010 at 1:54 PM, Bert Gunter gunter.ber...@gene.com wrote: One way to do it: 1. Convert your date column to the Date class using the as.Date() function. This allows you to do the necessary arithmetic on the dates below. dt - as.Date(a[,4],%d/%m/%Y) 2. Create a factor out of

[R] coping with a warning in if()

2010-01-19 Thread Héctor Villalobos
Hi, I'm sure this one is very easy I am trying to write a function where one of its arguments has two posible (strings) values, defaulting to one of them if none is specified. My problem is that when evaluating the function the following warning is produced: the condition has length 1

Re: [R] problem of data manipulation

2010-01-19 Thread Gabor Grothendieck
Using data frame, a, from the post below this is how it would be done in SQL using sqldf. We join together the original table, a, with a table of minimums (computed by the nested select) and then choose only the rows where dt - mindt 7 (in the where clause). library(sqldf) sqldf(select var1,

Re: [R] Number of download.

2010-01-19 Thread Liviu Andronic
On 1/19/10, Barry Rowlingson b.rowling...@lancaster.ac.uk wrote: In a similar vein, has anyone ever put any 'phone home' code in a package, so that authors can track usage? Something in the package startup code that pings a logging server, for example? Yes I know doing such a thing

Re: [R] coping with a warning in if()

2010-01-19 Thread jim holtman
Look at what happens when you don't pass in 'result': c('simple', 'complete') %in% c(simple, s, complete, c) [1] TRUE TRUE result is a vector of length two and provides two results and the 'if' was only expecting one. You might have to debug your code some more. You probably want to use

Re: [R] forgot the function to divide a dataset into equal parts

2010-01-19 Thread jim holtman
?cut ?split On Tue, Jan 19, 2010 at 3:18 PM, rusers.sh rusers...@gmail.com wrote: Hi,  I just cannot remember the R function to divide a dataset into equal parts. And i searched the divide dataset into equal parts  in R site, but cannot find it.  Anybody can tell me that function. I am just

Re: [R] coping with a warning in if()

2010-01-19 Thread Peter Alspach
Tena koe Hector In addition to Jim's comment, you might like to define your function as: fun - function(n, result = simple) This will set the default to 'simple' but one can still call it as fun(result='complete'). HTH ... Peter Alspach -Original Message- From:

Re: [R] Help deciphering segfault in make check

2010-01-19 Thread Seth Falcon
Hi, On 1/19/10 12:05 PM, Karl-Dieter Crisman wrote: I work with the Sage project, and we are trying to improve the ability to use R through Sage. Most things work, but make check seems to cause problems on certain platforms, and now that we want to upgrade to 2.10.1 I thought we should ask for

Re: [R] coping with a warning in if()

2010-01-19 Thread Lyman, Mark
Héctor Villalobos hvillalo at ipn.mx writes: Hi, I'm sure this one is very easy I am trying to write a function where one of its arguments has two posible (strings) values, defaulting to one of them if none is specified. My problem is that when evaluating the function the

[R] Bias-corrected bootstrap function?

2010-01-19 Thread Henrik
Hi, I try to do statistics on small samples (32 and 16 data points) using the bootstrap method. The results from the ordinary non-parametric bootstrap show significant impact from bias, which suggests the use of a bias-corrected bootstrap method. Is there any built in function for this in R? If

Re: [R] problem with the precision of numbers

2010-01-19 Thread kayj
Hi , Thanks for your help, I have been trying to use the bc package but I am getting the following error Error in system(cmd, input = input, intern = TRUE) : -l not found any idea?? -- View this message in context:

Re: [R] forgot the function to divide a dataset into equal parts

2010-01-19 Thread rusers.sh
Yes. I am looking for them. Thanks. 2010/1/19 jim holtman jholt...@gmail.com ?cut ?split On Tue, Jan 19, 2010 at 3:18 PM, rusers.sh rusers...@gmail.com wrote: Hi, I just cannot remember the R function to divide a dataset into equal parts. And i searched the divide dataset into equal

Re: [R] problem with the precision of numbers

2010-01-19 Thread Gabor Grothendieck
Maybe bc(..., args = ) or perhaps install a more standard version of bc. See links at http://r-bc.googlecode.com On Tue, Jan 19, 2010 at 5:43 PM, kayj kjaj...@yahoo.com wrote: Hi , Thanks for your help, I have been trying to use the bc package but I am getting the following error Error in

Re: [R] Bias-corrected bootstrap function?

2010-01-19 Thread David Winsemius
On Jan 19, 2010, at 5:06 PM, Henrik wrote: Hi, I try to do statistics on small samples (32 and 16 data points) using the bootstrap method. The results from the ordinary non-parametric bootstrap show significant impact from bias, which suggests the use of a bias-corrected bootstrap

Re: [R] Number of download.

2010-01-19 Thread Barry Rowlingson
On Tue, Jan 19, 2010 at 9:51 PM, Liviu Andronic landronim...@gmail.com wrote: Why would this be evil? For R, for example? I've already read some objections to this on r-help, but I'm not sure I understand the reasons. As long as the 'ping' happens once, at first start, anonymously, and

[R] Plot frame border to start at zero?

2010-01-19 Thread Douglas M. Hultstrand
Hello, I am creating plots of hourly precipitation and accumulated precipitation (on different axis, see attached image). I was wondering how can I have the plot frame (black border) start at zero, it looks like it is plotted less than zero? The code I use to create the png files is below:

[R] visualization kernelbb data

2010-01-19 Thread Mustafa Durmus
Hello R users, I think, I have an easy problem, but I can't solve it. I have defined home range size of my study animal by using kernelbb, but I couldn't find how to see the data of home range polygons like size and used smoothing parameter. Could anybody help me? Thank you, Mustafa

Re: [R] apply command

2010-01-19 Thread Dennis Murphy
Hi: Per Baptiste's suggestion (not the iapply one, the plyr one :) aaply(b, 1, function(x) sort(x, na.last = FALSE)) Var1 1 2 3 4 5 6 1 1 2 4 5 7 9 2 NA 2 3 3 3 5 HTH, Dennis On Tue, Jan 19, 2010 at 2:27 AM, marco salvini marco.salv...@gmail.comwrote: Can you please help on the

Re: [R] Symmetric Matrix classes

2010-01-19 Thread Gad Abraham
On Wed, Jan 20, 2010 at 2:26 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Scanning for 'Matrix' in old R-help e-mail, I found GA == Gad Abraham gabra...@csse.unimelb.edu.au     on Fri, 27 Nov 2009 13:45:00 +1100 writes:    GA Hi,    GA I'd like to store large covariance matrices

Re: [R] Symmetric Matrix classes

2010-01-19 Thread Gad Abraham
On Wed, Jan 20, 2010 at 8:18 AM, Douglas Bates ba...@stat.wisc.edu wrote: On Tue, Jan 19, 2010 at 9:26 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Scanning for 'Matrix' in old R-help e-mail, I found GA == Gad Abraham gabra...@csse.unimelb.edu.au     on Fri, 27 Nov 2009 13:45:00

Re: [R] how to install spatstat

2010-01-19 Thread Senlin Liang
Thanks. I got it right now. The reason is that I am using a 2.8.1 version of R, which seems causing trouble with the installation. After I updated my R to 2.10.x, everything works great now. best, senlin 2010/1/19 Uwe Ligges lig...@statistik.tu-dortmund.de On 19.01.2010 03:42, Rolf Turner

Re: [R] Help deciphering segfault in make check

2010-01-19 Thread Karl-Dieter Crisman
Dear Seth, You might be able to reproduce this and get some more information like this: R -d gdb run source(src/tests/Examples/base-Ex.R) Assuming you get a crash, type bt in the gdb console and send output. I think it may have ended up being related to different Fortrans

Re: [R] Plot frame border to start at zero?

2010-01-19 Thread Steven McKinney
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- project.org] On Behalf Of Douglas M. Hultstrand Sent: Tuesday, January 19, 2010 4:42 PM To: R mailing list Subject: [R] Plot frame border to start at zero? Hello, I am creating plots of hourly

[R] Deleting rows based on duplicate entries in one columns in a data matrix

2010-01-19 Thread Tuatara
Hi everybody, I would like to delete rows based on duplicate entries in column 3 in the data matrix X (size 6 x 57). I have tried the unique(x) command as data - X[unique(X[,3]),] however, for some reason the command introduces a lot of NA's into the dataset. So, now I'm looking for a

Re: [R] Deleting rows based on duplicate entries in one columns in a data matrix

2010-01-19 Thread Henrique Dallazuanna
Use duplicated indeed of unique. On Wed, Jan 20, 2010 at 12:47 AM, Tuatara franziskabro...@gmail.com wrote: Hi everybody, I would like to delete rows based on duplicate entries in column 3 in the data matrix X (size 6 x 57). I have tried the unique(x) command as data -

Re: [R] Deleting rows based on duplicate entries in one columns in a data matrix

2010-01-19 Thread Gabor Grothendieck
See: ?duplicated On Tue, Jan 19, 2010 at 9:47 PM, Tuatara franziskabro...@gmail.com wrote: Hi everybody, I would like to delete rows based on duplicate entries in column 3 in the data matrix X (size 6 x 57). I have tried the unique(x) command as data - X[unique(X[,3]),] however, for

Re: [R] Deleting rows based on duplicate entries in one columns in a data matrix

2010-01-19 Thread Tuatara
Thanks for the swift replies. I have found this to work for my purpose: data - subset(X, !duplicated(X[,3]) -- View this message in context: http://n4.nabble.com/Deleting-rows-based-on-duplicate-entries-in-one-columns-in-a-data-matrix-tp1018110p1018126.html Sent from the R help mailing list

[R] putting labels back on a matrix.

2010-01-19 Thread Jon Hak
I did not post this question to the ecology list, even though it is about an analysis using Vegan, since my question is based more on basic data manipulation in R. I think this is a fairly simple question but for the life of me I cannot find a reference for in the archives. I have an analysis

Re: [R] Plot frame border to start at zero?

2010-01-19 Thread jim holtman
plot(..., xaxs='i', yaxs='i') On Tue, Jan 19, 2010 at 7:42 PM, Douglas M. Hultstrand dmhul...@metstat.com wrote: Hello, I am creating plots of hourly precipitation and accumulated precipitation (on different axis, see attached image). I was wondering how can I have the plot frame (black

[R] could we use : to represent multiple matrice in a list or sequential chracter names

2010-01-19 Thread rusers.sh
Hi, I know we can use 1:10 to represent the 1,2,3,...,10 numbers, but the following conditions are except. Anybody knows how to represent the following two cases with similar usage of : or others? Usually, i will get several hundred names for them, such as a1,a2,... or f[[1]],f[[2]],...

[R] A question

2010-01-19 Thread Ron_M
Hi all, I have a expression like that : rep(2,4) [1] 2 2 2 2 Now I want to write it as through some automated way. Is there is function for doing that? I have tested with paste(), but count not get any desired result. Thanks, -- View this message in context:

Re: [R] could we use : to represent multiple matrice in a list or sequential chracter names

2010-01-19 Thread David Winsemius
On Jan 19, 2010, at 10:57 PM, rusers.sh wrote: Hi, I know we can use 1:10 to represent the 1,2,3,...,10 numbers, but the following conditions are except. Anybody knows how to represent the following two cases with similar usage of : or others? Usually, i will get several hundred names for

Re: [R] could we use : to represent multiple matrice in a list or sequential chracter names

2010-01-19 Thread Dennis Murphy
Hi: The : operator is meant for numeric sequences; see ?':' On Tue, Jan 19, 2010 at 7:57 PM, rusers.sh rusers...@gmail.com wrote: Hi, I know we can use 1:10 to represent the 1,2,3,...,10 numbers, but the following conditions are except. Anybody knows how to represent the following two

Re: [R] A question

2010-01-19 Thread David Winsemius
On Jan 19, 2010, at 11:17 PM, Ron_M wrote: Hi all, I have a expression like that : rep(2,4) [1] 2 2 2 2 paste(rep(2,4), sep=, collapse=) [1] Now I want to write it as through some automated way. Is there is function for doing that? I have tested with paste(), but count

Re: [R] Run time error when executing sqlQuery using the 64-bit version of R with 64-bit RODBC package in a Solaris 10 Sparc machine.

2010-01-19 Thread Eric Ma
I am having the exact same error, and the suggested work-around does not help. My env is: 64-bit SUSE Linux v 10.1 on Xeon processors. gcc and gfortran version is 4.1.2 64-bit R 2.10.1 compiled from soure using CC=gcc -m64 etc. 64-bit unixODBC driver manager 2.2.14 compiled from source

[R] Please Please Please Help me!!

2010-01-19 Thread Madhavi Bhave
Dear R helpers   (I have already written the required R code which is giving me correct results for a given single set of data. I just wish to wish to use it for multiple data.)   I have defined a function (as given below) which helps me calculate Macaulay Duration and Modified Duration and its

[R] R arithmetic probability plot

2010-01-19 Thread Natalia Slobodina
I am hoping to create a graph that will look like it is plotted on arithmetic probability plot. Something similar to how this is done in Excel: http://peltiertech.com/Excel/Charts/ProbabilityChart.html. I can't quite find a code that will transform the linear axis into a cumulative percent axis

Re: [R] R arithmetic probability plot

2010-01-19 Thread Dennis Murphy
Hi: For a normal probability plot, use qqnorm(). Example: x - rnorm(50) qqnorm(x) qqline(x) See the help page ?qqnorm for customization options. HTH, Dennis On Tue, Jan 19, 2010 at 11:09 PM, Natalia Slobodina nata...@uw.edu wrote: I am hoping to create a graph that will look like it is

[R] Reducing augmented matrices

2010-01-19 Thread jshort
Hi How does one tell R that one is using an augmented matrix as appose to an non-augmented matrix? For instance, when I want to solve two equations in two unknowns, I will have to solve a 2 by 3 augmented matrix, however all I know to type into R is something like this; weights =

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