On 10/03/2013 12:13 PM, Orlen wrote:
My apologies.
I want to test for normality to determine whether I need to use parametric
or nonparametric tests to analyze the data. A prof suggested this was a
good place to start with my data.
I have attached a copy of part of my data.
There are five
Hi
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
project.org] On Behalf Of Filipe Correia
Sent: Wednesday, October 02, 2013 10:32 PM
To: Charles Determan Jr
Cc: r-help@r-project.org
Subject: Re: [R] Interpreting the result of a Wilcoxon
On Thu, 26-Sep-2013 at 04:47PM +, Hui Du wrote:
|
| Hi All,
|
| I have a question about plotting graphs. Supposedly, I want to plot
| 12 graphs. Putting 12 graphs to one window seems too
| crowded. Ideally, I want to put 4 pictures in one window and plot
| them in three separate window.
Hello Experts,
I would like to utilize the XML package which is obviously quite new.
There are tons of messages in the web dealing with issues on that.
But I did not see any clear up to date solution.
On top my R on windows tell me that this is not available fro 3.01 which is
quite puzzling
Hi Petr,
On Thu, Oct 3, 2013 at 8:01 AM, PIKAL Petr petr.pi...@precheza.cz wrote:
Well, I guess I'm asking all of the three... :) Not with the intent to
choose which one fits, but because I was experimenting and making sure
I really understand how I could use R's implementation of the Wilcoxon
I have a data frame named all_cars containing 1082 rows and 1583 columns. Each
row represents an observation; each column represents a variable. Every data
value is an integer or decimal value; there are no nulls or non-numeric
strings. I want to use the tilting library to do variable
Hello,
I am using function makePSOCKcluster to make parallel computation on 3 EC2
Amazon machines.
I have a passwordless between machines and ssh is correct.
In the R 2.15.1 release this function works correctly.
Installing R 3.0.1 on my EC2 machines makePSOCKcluster does not produce the
cluster.
Hello,
I did a pca with over 20 snps for 340 observations (ids). If I plot the
eigenvectors (called rotation in prcomp) 2,3 and 4 (e.g. plot
(rotation[,2]) I see a strange column in my data (see attachment). I
suggest it is an artefact (but of what?).
Suggestion:
I used prcomp this way:
On 03/10/2013 09:13, Anna Longari wrote:
Hello,
I am using function makePSOCKcluster to make parallel computation on 3 EC2
Amazon machines.
I have a passwordless between machines and ssh is correct.
In the R 2.15.1 release this function works correctly.
Installing R 3.0.1 on my EC2 machines
I'm having some trouble interpreting the results of a Wilcoxon
(Mann-Whitney U) test. Hope you can help.
Two-tailed and one tailed tests generally give different p-values, with the
two-tailed p-value twice (one of) the one-tailed values for rather obvious
reasons. You need to sort out which
Hi Rolf,
On Thu, Oct 3, 2013 at 4:35 AM, rolf.kem...@renesas.com wrote:
Hello Experts,
I would like to utilize the XML package which is obviously quite new.
I think it's been around for quite some time actually. The ReadMe file
says it was originally developed in 1999.
There are tons of
For the archives, the solution I've come up with is to complete the install in
a location where write permissions are allowed for exe files and then simply
copy the extracted files from this folder to R's library folder, using the
components of update.packages as follows:
#get a list of old
Le jeudi 03 octobre 2013 à 10:35 +0200, rolf.kem...@renesas.com a
écrit :
Hello Experts,
I would like to utilize the XML package which is obviously quite new.
There are tons of messages in the web dealing with issues on that.
But I did not see any clear up to date solution.
On top my R
Le jeudi 03 octobre 2013 à 10:35 +0200, rolf.kem...@renesas.com a
écrit :
Hello Experts,
I would like to utilize the XML package which is obviously quite new.
There are tons of messages in the web dealing with issues on that.
But I did not see any clear up to date solution.
On top my R
Le jeudi 03 octobre 2013 à 10:35 +0200, rolf.kem...@renesas.com a
écrit :
Hello Experts,
I would like to utilize the XML package which is obviously quite new.
There are tons of messages in the web dealing with issues on that.
But I did not see any clear up to date solution.
On top my R
Hello!
I need to flag my operation as an error if it produces an error.
For example, this expression produces an error:
test-try(log(a))
str(test)
However, how can I proceed using the information contained in test object?
I am looking for something like:
if test is an error {do this and this}
On Thu, Oct 3, 2013 at 8:57 AM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
Hello!
I need to flag my operation as an error if it produces an error.
For example, this expression produces an error:
test-try(log(a))
str(test)
However, how can I proceed using the information
Thank you very much!
inherits(res, try-error) is what I was looking for!
On Thu, Oct 3, 2013 at 9:07 AM, Gabor Grothendieck
ggrothendi...@gmail.comwrote:
On Thu, Oct 3, 2013 at 8:57 AM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
Hello!
I need to flag my operation as an
On 03/10/2013 9:09 AM, Dimitri Liakhovitski wrote:
Thank you very much!
inherits(res, try-error) is what I was looking for!
I would have expected to see this in the ?try examples section, but it's
really hidden. I'll look into making it more obvious.
Duncan Murdoch
On Thu, Oct 3, 2013
It's not so obvious to me that this is an artifact. What prcomp() says is that
some of the eigenvectors have a lot of activity in some relatively narrow
ranges of SNPs (on the same chromosome, perhaps?). If something artificial is
going on, I could imagine effects not so much of centering
#let's suppose I have a list like this
mytest-list(45, NULL, 18, NULL, 99)
#to note that this is just an amended example because in fact
#I'm dealing with a long list (more than 400 elements)
#with no evident pattern of the NULL values
#I want to end up with a data frame like the following
Have you read An Introduction to R (ships with R) or another of the
many excellent R tutorials on the web? I ask, because you do not
appear to be using a sensible data structure. As your list appears to
be of a single type (probably numeric, maybe integer), it would be
preferable to use a vector,
Hi,
Something like this, maybe:
mytest.df - data.frame(i=seq_along(mytest)[!sapply(mytest, is.null)],
n=unlist(mytest))
mytest.df
i n
1 1 45
2 3 18
3 5 99
It took me a couple of tries, because I wasn't expecting unlist() to
drop the NULL values:
unlist(mytest)
[1] 45 18 99
Sarah
On
Try this
i=which(!sapply(mytest, is.null))
n=do.call(rbind, mytest[i])
mydf - data.frame(i, n)
mydf
i n
1 1 45
2 3 18
3 5 99
-
David L Carlson
Associate Professor of Anthropology
Texas AM University
College Station, TX 77840-4352
-Original
the list I'm dealing with is the follow-up of an lapply() not a native
data structure I've been set up for storing data originally;
the list it's a data structure I have to manage as a consequence of my
previous operations, something like:
path-./
files -list.files(path, pattern=.csv)
Hi,
Try:
set.seed(494)
h- matrix(sample(1:40,4*124,replace=TRUE),ncol=4)
set.seed(39)
m- matrix(sample(1:100,10*124,replace=TRUE),ncol=10)
colnames(h)- paste0(h,1:4)
colnames(m)- paste0(m,1:10)
mat1-combn(colnames(m),4)
res- lapply(colnames(h),function(x) {x1- h[,x];dat1-
I would appreciate some advice on what the preferred contents of RProfile.site
vs. .Rprofile should be. A .First() function can reside in either one, but is
it preferred to place it in .Rprofile? I currently use .First() in .Rprofile
files placed in separate directories used for different
Hi.
I'm a new user of R and I'm trying to run a spatial probit model using the
spatialprobit package. I've a dataset of 15677 obs (municipalities followed
up from 2001 to 2012). My depvar is the decision to outsource a particular
service (binary) and my indepvar of interest is shareholder (equal
Thanks for answering.
I already started hunting. But my first doubt was if I used prcomp
correctly (and this is in the moment my most important point). So far as I
understood your answer is yes. Is that correct?
I am puzzled by the fact that these columns are more or less in the
middle of my
Ed Siefker ebs15242 at gmail.com writes:
I'm used to using ctrl-c to end operations without killing R. But I've used
xlsx in this session, which loads Java, which apparently intercepts the
ctrl-C. Accordingly, I hit ctrl-C, R died, and I lost a lot of work.
I did some looking, and found
Dear,
I seem to be unable to work out a solution for multi-panel layout using
xyplot. I have tried with layout, grid.layout (latticeExtra), but
unsuccessfully. I can produce all plots individually, but just can't figure
out how to put them all in the same panel! Here is a piece of the code.
Dear R users,
I am doing custom contrasts with R (comparison of group means).
Everything works fine, but I would like to test the 3 contrasts with and
without a Welch correction for unequal variances.
I can replicate SPSS results when equal variances are assumed, but I do
not manage to test
Hi,
You may try:
names(mytest)- 1:length(mytest)
mat1- do.call(rbind,mytest)
dat1-data.frame(i=row.names(mat1),n=mat1[,1])
row.names(dat1)- 1:nrow(dat1)
dat1
# i n
#1 1 45
#2 3 18
#3 5 99
A.K.
- Original Message -
From: Massimo Bressan mbres...@arpa.veneto.it
To:
Hello,
I have been tasked with taking an excel file that my colleague had implemented
Triple Exponential Smoothing and recreate using R.
The following image shows the before and after of smoothing out a fixed
interval time series data using Triple Exponential Smoothing inside of Excel.
Open a connection to the file (and leave it open), then just use the cat
function with the file option. Or use append=TRUE argument to cat.
On Tue, Oct 1, 2013 at 8:13 AM, Matthew sobom.s...@univ-fcomte.fr wrote:
Hello everybody,
i have to save a 100 iteration computation in a file every 5
It seems to load now on 3.0.2 32bit and 64bit but NOT 3.0.1.
install.packages(climstats, repos=http://R-Forge.R-project.org;,
type=source)
I did have to manually install some of the dependencies.
There were 2 of us that tried loading climstats on different machines so there
must have been a
Hi there,
I have draw a scatter plot. Now, I hope to label the points in the plot.
For example:
plot(1:10)
text(1:10, 1:10, LETTERS[1:10])
In the above line, I can set position for each labels with pos, e.g.:
text(1:10, 1:10, LETTERS[1:10], pos = sample(1:4, 10, replace = TRUE))
as what
Hi Eliza,
Then, res needs a slight modification
library(car)
res- lapply(colnames(h),function(x) {x1- h[,x];dat1-
do.call(rbind,lapply(seq_len(ncol(mat1)),function(i){ x2- m[,mat1[,i]];GG-
lm(x1~x2[,1]+x2[,2]+x2[,3]+x2[,4]);GGsum- summary(GG); data.frame(
You can use the mapply function (or Vectorize) to call text with multiple
values for arguments that only take a single value, like adj and offset.
On Thu, Oct 3, 2013 at 10:48 AM, Jinsong Zhao jsz...@yeah.net wrote:
Hi there,
I have draw a scatter plot. Now, I hope to label the points in the
Unless you're trying to provide your startup settings to multiple
users (typically only sysadms do this), stick with .Rprofile (in your
home directory). There is no need to have one per working directory,
unless they differ, cf. ?Startup [...a file called ‘.Rprofile’ is
searched for in the
SSweibull() : Â problems with step factor and singular gradient
Hello
I am working with growth data of ~4000 tree seedlings and trying to fit
non-linear Weibull growth curves through the data of each plant. Since they
differ a lot in their shape, initial parameters cannot be set for all
On 03/10/2013 12:48 PM, Jinsong Zhao wrote:
Hi there,
I have draw a scatter plot. Now, I hope to label the points in the plot.
For example:
plot(1:10)
text(1:10, 1:10, LETTERS[1:10])
In the above line, I can set position for each labels with pos, e.g.:
text(1:10, 1:10, LETTERS[1:10], pos =
On Oct 3, 2013, at 8:32 AM, Daniel Hickman wrote:
Hello,
I have been tasked with taking an excel file that my colleague had
implemented Triple Exponential Smoothing and recreate using R.
The following image shows the before and after of smoothing out a fixed
interval time series
On Oct 3, 2013, at 10:00 AM, Jenny Williams wrote:
It seems to load now on 3.0.2 32bit and 64bit but NOT 3.0.1.
install.packages(climstats, repos=http://R-Forge.R-project.org;,
type=source)
I did have to manually install some of the dependencies.
There were 2 of us that tried loading
ts - ts(data$QtyPerWeek, frequency=52)
HoltWinters(ts,0.46924,0.05,0.2)
This results in the following error. Error in decompose(ts(x[1L:wind],
start = start(x),
frequency = f), seasonal) : time series has no or less than 2 periods
Since you have set the frequency of the time series to
Hello there,
I try to construct a variable with R, but I have some difficulties.
Assume that I use a data set named = mydata. I want to create a variable
that is the mean (totmean) or the sum (totsum) of 6 variables (var1, var2,
var3, var4, var5, var6). However, I want only participants who have
Hi Jim,
Thanks a lot for your help!
Kind regards,
Xianwen
On 10/02/2013 03:24 AM, Jim Lemon wrote:
On 10/02/2013 04:43 AM, Xianwen Chen wrote:
Thanks Jim,
The picture width is adjusted. That was great help! I really
appreciate it.
Does lwd mean 'line width'? I'm not exactly sure how
On 13-10-03 6:42 PM, Jesse Gervais wrote:
Hello there,
I try to construct a variable with R, but I have some difficulties.
Assume that I use a data set named = mydata. I want to create a variable
that is the mean (totmean) or the sum (totsum) of 6 variables (var1, var2,
var3, var4, var5,
Hi Jesse,
Here is one approach:
score - function(dat, minimumN) {
# get the number of columns (variables)
k - ncol(dat)
# take the row means, excluding missing
mean - rowMeans(dat, na.rm=TRUE)
# get the number missing for each row
nmiss - rowSums(is.na(dat))
# if nmiss is greater
On 10/04/2013 08:42 AM, Jesse Gervais wrote:
Hello there,
I try to construct a variable with R, but I have some difficulties.
Assume that I use a data set named = mydata. I want to create a variable
that is the mean (totmean) or the sum (totsum) of 6 variables (var1, var2,
var3, var4, var5,
Hi
Have a look at ?print.trellis. Lattice (xyplot) is not like plot
Untested.
starting at bottom left going across the rows
print(plott[[4]], position = c(0,0,1/3,0.5), more = T)
print(plott[[5]], position = c(1/3,0,2/3,0.5), more = T)
print(plott[[6]], position = c(2/3,0,1,0.5), more = T)
Hi,
Try:
set.seed(45)
df1-
data.frame(datetime=as.POSIXct(2011-05-25,tz=GMT)+1:200,value=sample(1:40,200,replace=TRUE),value2=
sample(45:90,200,replace=TRUE))
res-
with(df1,aggregate(cbind(value,value2),list(as.POSIXct(cut(datetime,breaks=5
sec))+4),mean))
colnames(res)[1]-
Anyone aware of a package or technique to import odf data file into R, I will
appreciate his/her help.
Peter Maclean
Department of Economics
UDSM
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
Hi,
Try:
dat$y- as.character(dat$y)
dat1- dat
dat2- dat
library(stringr)
dat$y[NET]- substr(word(dat$y[NET],2),1,1)
dat$y
#[1] n n house n tree
#or
for(i in 1:length(NET)){dat1$y[NET[i]]- n}
dat1$y
#[1] n n house n tree
#or
dat2$y[NET]- gsub(.*(n).*,\\1,dat2$y[NET])
Hello:
I was wondering, has anyone has encountered an R package that performs random
projection/random mapping? RP is a procedure that is akin to Principal
Components Analysis in that it accomplishes dimensionality reduction, but is
far more computationally efficient. I have been searching
Hi all,
I am using svyglm and svyttest to weight my outcome with propensity scores
as per:
Ridgeway colleagues (2013) Toolkit for Weighting and Analysis of
Nonequivalent Groups: A tutorial for the twang package
So after:
glm1 - svyglm(X ~ Y, design=design.ps)
summary(glm1)
or
svyttest(X ~
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