Hi, I have a quesite on meta-analysis with 'metafor'.
I would like to calculate the standardized mean difference (SMD), as
Hedges' g, in pre-post design studies.
I have data on baseline (sample size, mean and SD in both the
experimental
and the control group) and at end of treatment (same as
I want to compute monthly summaries from daily data. I want to choose which
month to start and how many months to total over. Default could be to
start in January and total over 3 months. For the number of rain days the
default threshold is 0.85mm.
I tried to make a function which sum all
Comment below
On 13/04/2015 20:46, Antonello Preti wrote:
Hi, this is another quesite related to the use of 'metafor' for calculation
of standardized mean change in pre-post design studies.
Essentially, my aim is to compare different method to arrive at the same
conclusion: Does the treatment
You probably should go to the RStudio help/blog rather than here. This is not
an RStudio list and the expertise is at the RStudoi site.
Does R load on its own?
What OS are you using?
John Kane
Kingston ON Canada
-Original Message-
From: sojoodmlk1...@gmail.com
Sent: Tue, 14 Apr
Apologies for cross-posting
There are 4 remaining seats on the following course:
Course: Data exploration, regression, GLM GAM with introduction to R
When: 4-8 May 2015
Where: University of Palermo, Italy
Course flyer: http://www.highstat.com/Courses/Flyer2015_05Palermo.pdf
URL:
I installed R and then R studio but it doesn't open every time i try to
open it it gives me this message Rstudio requires an existing
installation of R in order to work. please select the version of R to use .
i'm using R i386 3.1.3 and downloaded RStudio 0.98.1103 - Windows
XP/Vista/7/8. do you
Dear R Users,
Is there any package in R that use Markov Regime switching model to forecast
?
I need to do one-step ahead forecast using a Markov Regime switching model.
I have one predictor variable that switches across 2 regimes. I had a
look, but I couldn't find a package in R which use a
Dear All,
Thank You for the quick responses.
Managed to solve my problem through:
http://www.faculty.biol.ttu.edu/strauss/multivar/R/SamplePCABootstrap.R.txt
or
http://r.789695.n4.nabble.com/bootstrapped-eigenvector-method-following-prcomp-td877655.html
Used the first one however, code is too
Hi Jean,
Thanks for the help!
How can I compute monthly total of rainfall?
I want to compute both monthly total of rainfall and number of raindays. In
below function month_tot is a table and I want to some month. default is 3
months. The loop for quarter is not working and I am wondering why it
Hi group,
I am automatically creating several matrices to store results from different
analyses on vectors of different lengths. The matrices are named according to
each vector, so I can trace back results. I am using the following commands,
which give me an error. My idea is to populate
If you want to calculate the number of days having greater than a certain
threshold of rain within a range of months, a function like this might
serve your needs.
raindays - function(data, monStart=1, monEnd=3, threshold=0.85) {
with(data, {
selRows - Month = monStart Month = monEnd Rain
I think it would be easier to keep track of what you're doing, if you save
the assignment to the very end of your for() loop. For example ...
# create an empty matrix to be used as a template
Mtemplate - matrix(data=NA, nrow=13, ncol=3,
R Studio loads R if it can find it. Since you have installed R, the error
message means that R Studio can't find it or is not sure which version to use.
The part of the message that says please select the version of R to use
should give you a dialog box to use to navigate to the directory that
Perhaps you should learn to use Google? It came up easily there for me. There
is also an R package called sos that can help you find capabilities among the
thousands of contributed packages on CRAN.
---
Jeff Newmiller
Hi Mike,
Very interesting. The plot itself on the computer that does not plot - still
does not plot - no surprise there. But the command with useRaster = FALSE
actually plots the raster. So that means it is something wrong with the raster
package? Did i forget to install some dependency,
On Tue, Apr 14, 2015 at 7:09 PM, Sarah Goslee sarah.gos...@gmail.com wrote:
Hi Michael,
On Tue, Apr 14, 2015 at 12:57 PM, Michael Haenlein
haenl...@escpeurope.eu wrote:
Dear all,
I am used to running R locally on my Windows-based PC. Since some of my
computations are taking a lot of
It is a printing problem - the default number of digits in print.summary.aov
is max(3L, getOption(digits) - 3L). Set options(digits=7) instead of
your current 6 (?) or try print(summary(fit.Y), digits=7) to see more
digits.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Tue, Apr 14, 2015 at
I'm not sure I completely understand your authentication needs, but
perhaps the RCurl package could be of some use to you.
Rob
On 4/13/2015 1:26 AM, Luca Cerone wrote:
Thanks Jeff,
and OK I'll move next questions on the topic to the devel list :)
I was hoping there were packages that already
Sounds like you need to do some of your own homework... In
particular, you need to learn how to write your own functions in R to
carry out such tasks.
There are many good tutorials on how to program in R, e.g. the Intro
to R that ships with R and many others that can be found by searching.
Choose
Li Li -
I belive it's a rounding error -- try setting
options(digits=8)
before displaying the output:
summary(fit.Y)
Df Sum Sq Mean Sq F value Pr(F)
sample.Y 3 2203 734 190706 2e-16 ***
Residuals8 0 0
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01
Hi,
I'm trying to get cross validation error for a simple linear regression
model, using function CVlm from package DAAG. I would need also the MSE
errors for each fold, because I want to test the one standard error rule.
My code is
a=c(0.0056, 0.0088, 0.0148, 0.0247, 0.0392, 0.0556, 0.0632,
?Hi, I was wondering if R has a provision of performing cost-effectiveness
analyses using decision trees and markov models.
Thanks!
Ashima
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Hi all,
I have following data. When I perform an anova, the residual sum of
square returns to be zero.
But this is wrong, since we can hand calculate the RSS to be around 0.0308.
Did anyone come across the same problem before? Any suggestions?
Thanks.
Hanna
ydata
Y sample.Y
1
?
Hi All,
I was wondering if R has a provision of performing cost-effectiveness analyses
using decision trees and markov models. And if anyone has used it before.
Thanks!
Ashima
[[alternative HTML version deleted]]
__
See in-line
On 14/04/2015 18:23, li li wrote:
Hi all,
I have following data. When I perform an anova, the residual sum of
square returns to be zero.
But this is wrong, since we can hand calculate the RSS to be around 0.0308.
Did anyone come across the same problem before? Any suggestions?
Dear all,
I am used to running R locally on my Windows-based PC. Since some of my
computations are taking a lot of time I am now trying to move to a remote R
session on a LINUX server but I am having trouble to getting things work.
I am able to access the LINUX server using PuTTY and SSH. Once I
Hi Michael,
On Tue, Apr 14, 2015 at 12:57 PM, Michael Haenlein
haenl...@escpeurope.eu wrote:
Dear all,
I am used to running R locally on my Windows-based PC. Since some of my
computations are taking a lot of time I am now trying to move to a remote R
session on a LINUX server but I am having
I know R can read / write SAS data in xpt format and can also read SAS data
in sas7bdat format.
However, I am wondering if I can write sas7bdat with R.
thanks.
[[alternative HTML version deleted]]
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0.003725088 is the mean square error.
2015-04-14 13:44 GMT-04:00 Michael Dewey li...@dewey.myzen.co.uk:
See in-line
On 14/04/2015 18:23, li li wrote:
Hi all,
I have following data. When I perform an anova, the residual sum of
square returns to be zero.
But this is wrong, since we
I am considering using RUSBoost (https://github.com/SteveOhh/RUSBoost) and
was wondering if anyone has used this package, and could give me some
insight and help. The help would be on more of the machine learning side,
I just have a few questions about implementation.
[[alternative HTML
Hi all,
If I run the following command in hive shell, I can get a compressed
output(e.g. 00_0.gz) in HDFS because I already changed Hadoop and Hive
configuration files to achieve this.
*command:*
insert overwrite directory '/testdata' select * from tbl;
However, if I run the same command
Hi,
I have the current version of R installed on 2 different Windows computers. On
one i can plot using the plot function a raster in geotif format, on the other
it plots only the axis, an empty color bar and no raster what so ever without
generating any errors or warnings. So i suspect
You ask quite a lot of questions, I have given some hints about your
first example inline
On 14/04/2015 09:07, Joachim Audenaert wrote:
Hello all,
I am writing a script for statistical comparison of means. I'm doing many
field trials with plants, where we have to compare the efficacy of
On Wed, 15 Apr 2015 at 01:16 Michael Sumner mdsum...@gmail.com wrote:
On Wed, 15 Apr 2015 at 00:50 Monica Pisica pisican...@hotmail.com wrote:
Hi,
I have the current version of R installed on 2 different Windows
computers. On one i can plot using the plot function a raster in geotif
On Wed, 15 Apr 2015 at 00:50 Monica Pisica pisican...@hotmail.com wrote:
Hi,
I have the current version of R installed on 2 different Windows
computers. On one i can plot using the plot function a raster in geotif
format, on the other it plots only the axis, an empty color bar and no
Hello all,
I am writing a script for statistical comparison of means. I'm doing many
field trials with plants, where we have to compare the efficacy of
different treatments on, different groups of plants. Therefore I would
like to automate this script so it can be used for different datasets
Hi jpm miao,
What sort of Excel graphs do you want to produce? There are a few
varieties, you know.
Jim
On Wed, Apr 15, 2015 at 1:54 PM, jpm miao miao...@gmail.com wrote:
Hi,
I understand that there're many great graphic packages in R (e.g.,
ggplot2) . Nevertheless, my office uses Excel
Thanks so much. I was struggling to install caret package on my upgraded R.
It was failing to compile lme4 and threw up an error about llapack and lbas.
I never realized that I needed to install lbas(I already had llapack)
through SPM. Once I did that, I could install caret using install.packages
Hello,
I try to open a text file test.txt with the content
* a b d
* z u i h hh
* h bh kk
so that I get a list with each line as a vector with the letters as
elements of the the vector.
My approach ...
test - scan (test.txt, what=character, sep=\n)
Read 3 items
test.list - lapply (test,
I looked around online but could not figure out how to build decision trees and
specify probabilities at each node along with payoffs. Can you please help ?
From: mehmet.su...@gmail.com mehmet.su...@gmail.com on behalf of Suzen,
Mehmet
Yes.
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained,
Hi,
I understand that there're many great graphic packages in R (e.g.,
ggplot2) . Nevertheless, my office uses Excel extensively. Is there any
package in R that produces Excel graphs by R codes? Thanks!
[[alternative HTML version deleted]]
Hi Michael,
On 14 Apr 2015, at 18:59, Michael Haenlein haenl...@escpeurope.eu wrote:
Dear all,
I am used to running R locally on my Windows-based PC. Since some of my
computations are taking a lot of time I am now trying to move to a remote R
session on a LINUX server but I am having
Don't use html formatted emails and always copy the list on your replies.
For example?
rainstats - function(data, months=3) {
if (! months %in% c(1, 2, 3, 4, 6, 12)) stop(Months must divide into 12!)
period - 12/months
grps - rep(1:period, each=months)
Group -
You should investigate using the parallel package. You have to have R installed
on the Linux machine along with any contributed packages you use, but you can
delegate tasks to it from within an Rgui or RStudio session running on your
Windows box. There are even tutorials online that step you
R 3.1.3
OS X
Colleagues
I have data of this sort:
START - c(1, 2, 3, 4, 8, 14, 15, 118, 118, 119, 202, 202, 203, 204)
END - c(1, 2, 3, 6, 13, 14, 117, 118, 118, 201, 202, 202, 203, 204)
I would like to create a vector that looks like this:
START.to.END-
Try all.equal(df[1,3], df[2,3])
This relates to how decimal numbers are stored in computers. It is not an R
only issue, but it is described in the R-FAQ:
From the R-FAQ - http://cran.r-project.org/doc/FAQ/R-FAQ.html
7.31 Why doesn't R think these numbers are equal?
The only numbers that can
I've not seen much and most of the responses relate to classification trees and
not clinical decision trees. See this post:
https://stat.ethz.ch/pipermail/r-help/2012-July/318597.html . I was unable to
run arvore on a recent version of R.
-Original Message-
From: R-help
Is it possible to read a LIST file into R? Any package?
I've done some googling, but there are just too many hits for a regular 'list'.
Appreciate any pointers!
--
Dimitri Liakhovitski
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I have a data frame of dim 3x600. There are pairs of rows which have the
exact same value in column 3.
head(df)
POP1 POP2 ABSDIFF
L0005.01 0.98484848 0.688118812 0.2967297
L0005.03 0.01515152 0.311881188 0.2967297
L0008.02 0.97727273 0.004424779 0.9728479
L0008.04
It is not vectorized, but it is simple:
EXPANDED - unlist(mapply(:, START, END))
-
David L Carlson
Department of Anthropology
Texas AM University
College Station, TX 77840-4352
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On
I suggest that you investigate installing RStudio server on the Linux
Box. If you do this, you can logon to RStudio (on the Linux server), and
it will look exactly like RStudio running on a windows box. You may need
some help configuring the Linux box to allow access to port 8787, which
is the
Hi David,
Thanks. That was enlightening.
Whoop.
V
On Tue, Apr 14, 2015 at 3:53 PM, David L Carlson dcarl...@tamu.edu wrote:
Try all.equal(df[1,3], df[2,3])
This relates to how decimal numbers are stored in computers. It is not an
R only issue, but it is described in the R-FAQ:
From the
I didn't try this but there is an experimental package from Dr. Shotwell.
http://cran.r-project.org/web/packages/sas7bdat/index.html
if it can read, maybe you can modify to write as well?
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Do you have specific example that you have tried to implement in R?
Can you post your codes too?
There are high quality package BCEA and BayesTree, that could be helpful;
http://cran.r-project.org/web/packages/BCEA/index.html
http://cran.r-project.org/web/packages/BayesTree/index.html
But if the answer to the question Does R load on its own? is no then this
probably is the right place to ask for help. Of course, I would probably just
suggest re-installing R, but someone else here might have better answers.
What produced this file?
On Tue, Apr 14, 2015 at 4:40 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
Is it possible to read a LIST file into R? Any package?
I've done some googling, but there are just too many hits for a regular
'list'.
Appreciate any pointers!
--
Dimitri
Try Googling for
.list file extension
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Tue, Apr 14, 2015 at 1:40 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
Is it possible to read a LIST file into R? Any package?
I've done some googling, but there are just too many hits
IMDB. I guess I'll just have to open it as any text file.
On Tue, Apr 14, 2015 at 4:48 PM, Sarah Goslee sarah.gos...@gmail.com wrote:
What produced this file?
On Tue, Apr 14, 2015 at 4:40 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
Is it possible to read a LIST file into
In the same way they would be different in any programming language. See R FAQ
7.31.
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.
On Wed, 15 Apr 2015 at 02:49 Monica Pisica pisican...@hotmail.com wrote:
Hi Mike,
Very interesting. The plot itself on the computer that does not plot -
still does not plot - no surprise there. But the command with useRaster =
FALSE actually plots the raster. So that means it is something
On Tue, Apr 14, 2015 at 11:57 AM, Michael Haenlein haenl...@escpeurope.eu
wrote:
Dear all,
snip
(3) Can I open several instances of R in parallel? On my PC I sometimes
have 2-3 windows open in parallel that work on different calculations to
save time. Not sure to which extent this is
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