Hi all,
I'm responsible for collating data on antibiotic use at my local group of
hospitals. I have data for five different hospitals, about 40 different
antibiotics and monthly data going back to 2006.
At the moment, I have this stored in 5 datafiles, one for each hospital,
formatted as
Hi Trent,
I may be missing something, but I think that if you simply add your
column with the hospital code to each of the five data frames:
hospital1.df$hospital-hospital1
hospital2.df$hospital-hospital2
...
and then concatenate (rbind) them you can get what you want without
going to a 3D
Dear Trent
If you want them side-by-side in one data frame then you could use merge
making sure it only merges by date. I would use sub to change all the
anitbiotic names by adding h1 h2 and so on. Then you can sum
antibiotic over hospital by using grep to select all the columns
containing
Dear R-list,
let us say I want to report the reliability of group means for HRS (ICC2):
library(multilevel)
data(bh1996)
mult.icc(bh1996[,c(HRS,LEAD,COHES)],grpid=bh1996$GRP)
Variable ICC1ICC2
1 HRS 0.129237 0.91713
2 LEAD 0.147462 0.92804
3COHES 0.048049 0.79008
the
The trial “test” script worked, as well as adding getwd() to my current script
also fixed the problem. So it seems “file=“ isn’t necessary after all to run
from the terminal.
Thanks everyone for your help! :-)
On Aug 4, 2015, at 9:20 AM, Ista Zahn istaz...@gmail.com wrote:
On Tue, Aug
I am wanting to do a KM curve of two groups using survival. For some
reason, the summary(survfit) gives me the following output:
records n.max n.start events median 0.95LCL 0.95UCL
VAR=N 10931 10931 10931 1646 NA NA NA
VAR=Y3452 34523452906 NA
On Aug 5, 2015, at 9:25 AM, Evan Kransdorf evan.kransd...@gmail.com wrote:
I am wanting to do a KM curve of two groups using survival. For some
reason, the summary(survfit) gives me the following output:
records n.max n.start events median 0.95LCL 0.95UCL
VAR=N 10931
Dear all,
I have a question about lattice use. I would like to use it to represent:
- my raw data as points,
- and the results of a non linear fit as a line,
- having 2 groups data (and so 2 colors).
However, as I have few raw data, I would like to increase the number of
points to smooth the
Good morning,
I would like to know how often per year is a new full version release of R.
Thanks
--
Djossè Parfait BODJRENOU
Chef de la Division Centralisation et Analyse des Données
Statistiques /DPP/MESFTPRIJ
[[alternative HTML version deleted]]
Hi :-) i am really looking forward to get some help... Since I am a
R-beginner I need it.
I have a model consisting of the factors: dpi, infection, dissection day and
plate. My reskponse variable is cells/mg. dpi is nested in dissection day.
They are all fixed variables.
I produced this nested
New versions are released when they are ready. This is volunteer-driven
software.
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#.
On 08/05/2015 10:08 AM, Jeff Newmiller wrote:
New versions are released when they are ready. This is volunteer-driven
software.
From https://developer.r-project.org/ :
The overall release schedule is to have annual x.y.0 releases in Spring, with
patch releases happening on an as-needed
In addition, there are documents here:
https://www.r-project.org/certification.html
that cover R’s SDLC (Software Development Life Cycle) that may be helpful.
Regards,
Marc Schwartz
On Aug 5, 2015, at 12:19 PM, Martin Morgan mtmor...@fredhutch.org wrote:
On 08/05/2015 10:08 AM, Jeff
On 05.08.2015 19:08, Jeff Newmiller wrote:
New versions are released when they are ready. This is volunteer-driven
software.
Actually the plans are a bit more formal:
http://developer.r-project.org/
Best,
Uwe Ligges
So 3.1.3 to 3.2.0 was a major release?
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...
On 05/08/2015 2:15 PM, Jeff Newmiller wrote:
So 3.1.3 to 3.2.0 was a major release?
Yes. We do have the oddity (see ?version) that 3 is the major version
number and 2.0 is the minor version number including 0 as the
patchlevel, but we still call it a major release when the number in the
middle
I rather suspect the problem is primarily statistical, not R related. If at
all possible, try to get some local statistical advice. Most probably, you
have empty cells in some of the dpi.f by diss.f table.
Also, using a Gaussian family and the cells/mg response may be
inappropriate: 1 cell in 5
On 05 Aug 2015, at 20:32 , Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 05/08/2015 2:15 PM, Jeff Newmiller wrote:
So 3.1.3 to 3.2.0 was a major release?
Yes. We do have the oddity (see ?version) that 3 is the major version
number and 2.0 is the minor version number including 0 as
On 05/08/2015 4:36 PM, peter dalgaard wrote:
On 05 Aug 2015, at 20:32 , Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 05/08/2015 2:15 PM, Jeff Newmiller wrote:
So 3.1.3 to 3.2.0 was a major release?
Yes. We do have the oddity (see ?version) that 3 is the major version
number and 2.0
Colleagues,
I need to simulate skewed data so I can run a sample size calculation.
I know the 2.5th, 25th, 50th, and 75th centiles of the data (32, 43, 48, 250).
data - matrix(c(75,250,50,48,25,43,2.5,32),nrow=4,ncol=2,byrow=TRUE)
dimnames(data) - list(NULL,c(x,y))
data
Is there a way I can
maybe i have to make my data more clear to you „smile“-Emoticon
I am working with stickleback and a parasite. for my experiments I infected
the fish, so I have 3 groups in my infected factor (infected, exposed but
not infected and naive controll)
To get some information about different time points
I'm trying to install package caret on a remote server. At first, it told me
that I didn't have the necessary dependencies (ggplot2, nplotr, ...,
BradleyTerry2). I played with the repositories and the mirrors until I was
able to install all of the dependency packages except for BradleyTerry 2.
I'm using RCurl with postForm() to post to a URL that responds with a
PDF. I cannot figure out how to write the resulting PDF data to a
file without corruption.
result = postForm(url, binary=TRUE)
Both this:
capture.output(result, file='/tmp/export.pdf')
and this:
f = file('/tmp/export.pdf',
Greetings R mavens (and that's YOU). Given the following how on earth do I
aggregate and sum duplicate PCT rows into one combined row per PCT?
Data types
str(xxx)
'data.frame': 9 obs. of 3 variables:
$ Registered: int 1327 2129 10 433 5 166 1784 17 787 700
$ GA_Total : int 127 150 0 32 1
Hint: See below.
On Wednesday, August 5, 2015, John Sorkin jsor...@grecc.umaryland.edu
wrote:
Colleagues,
I need to simulate skewed data so I can run a sample size calculation.
I know the 2.5th, 25th, 50th, and 75th centiles of the data (32, 43, 48,
250).
data -
On Aug 5, 2015, at 4:21 PM, Bert Gunter bgunter.4...@gmail.com wrote:
Hint: See below.
On Wednesday, August 5, 2015, John Sorkin jsor...@grecc.umaryland.edu
wrote:
Colleagues,
I need to simulate skewed data so I can run a sample size calculation.
I know the 2.5th, 25th, 50th, and
On 08/05/2015 11:52 AM, Greg Donald wrote:
I'm using RCurl with postForm() to post to a URL that responds with a
PDF. I cannot figure out how to write the resulting PDF data to a
file without corruption.
result = postForm(url, binary=TRUE)
Both this:
capture.output(result,
# your data, from dump(xxx, file=stdout())
xxx -
structure(list(Registered = c(1327, 2129, 10, 433, 5, 166, 1784,
17, 787), GA_Total = c(127, 150, 0, 32, 1, 76, 153, 7, 31), PCT = c(1120,
1121, 1121, 1122, 1124, 1125, 1125, 1125, 1126
)), .Names = c(Registered, GA_Total, PCT), class = data.frame,
Hello All,
I have finished my first R package, BondLab, and it will be available in Feb
2016. I wrote the book and R package concurrently. Prior, I had very little
programming experience other than VBA and using others R packages.
Sending again as I pressed the wrong button
Hi
Your model is overfitted for the number of points - the fitted values bear
no resemblance to a line fitting the data - ?too many x values to properly
predict
? splines etc
library(locfit)
?locfit
If you want coefs of sort.
You have to do a nls on
Hi,
I am trying to create a bivariate ellipse to see if the true values fall
within the 95% confidence ellipse. I am getting subscript out of bounds
error in R with following code. Not sure what is causing it. When I use the
kde2d function with n=30 I get the error but not for n=25 and below.
I think that is because the value returned from postForm has an attribute;
remove it by casting the return to a vector
fl - tempfile(fileext=.pdf)
writeBin(as.vector(postForm(url, binary=TRUE)), fl)
The httr package might also be a good bet
writeBin(content(POST(url)), fl)
Or
El 04/08/15 a las 20:19, Jose Manuel Veiga del Baño escribió:
Estimados colegas:
Estoy tratando de ejecutar varios scripts de R a través de php. Para ello
estoy utilizando el siguiente código pero me sale:
El URL solicitado no ha sido localizado en este servidor. El URL de
la página que
Hola...Otra forma y mas robusta.. pienso yo, es usar PL/R
http://www.joeconway.com/plr/de esta forma llamas a procedimientos almacenados
en postgres y entiendo yo que es mas f�cil la interacci�n entre php y
postgres.Es una idea, y de paso ganas mucho en la administraci�n de datos
Patricio.
Buen dia, quisiera usar el paquete twitteR para hacer analisis de texto con
el paquete tm, pero no puedo hacer la autentificacion con el OAuth.
Alguien me podria dar los pasos a seguir?
Gracias
José
--
Abraza la incertidumbre, es un intento de tener una filosofía de vida para
agarrarme de
Hola,
A finales del año pasado, se preguntó por esto mismo.
Aquí puedes ver la cadena de dudas/consejos/soluciones...
http://grokbase.com/t/r/r-help-es/14b1pj7y1n/r-es-pregunta-creo-que-simple-para-usar-twitter
Saludos,
Carlos Ortega
www.qualityexcellence.es
El 5 de agosto de 2015, 20:06, Jose
Hola,
No sé si todavía es útil...:
http://stats.stackexchange.com/questions/4279/how-can-i-integrate-r-with-php
Saludos,
Carlos Ortega
www.qualityexcellence.es
El 4 de agosto de 2015, 20:19, Jose Manuel Veiga del Baño chem...@um.es
escribió:
Estimados colegas:
Estoy tratando de ejecutar
Gracias Carlos voy a probar siguiendo esos mensajes.
El 5 de agosto de 2015, 15:16, Carlos Ortega c...@qualityexcellence.es
escribió:
Hola,
A finales del año pasado, se preguntó por esto mismo.
Aquí puedes ver la cadena de dudas/consejos/soluciones...
Estimados
Yo supe colocar algunas cosas entre php y R, pero creo que hoy hay una pregunta
anterior, ¿tienes acceso al servidor?, ¿Qué sistema operativo? ¿Qué base de
datos? ¿Qué se usa para interactuar (html5, rest)?
Porque posiblemente hoy es necesario pasar por php, r tiene herramientas para
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