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the software something
about when the samples occur in time, otherwise it doesn't have the
information needed to properly model the decay in correlation with
time.
You need to give it the observation time, however you measured it.
HTH
G
Best wishes
Tom
-Original Message-
From: Gavin Simpson
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the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Gavin Simpson, PhD [t] +1 306 337 8863
Adjunct Professor, Department of Biology[f] +1 306 337 2410
Institute of Environmental Change Society [e
question.
HTH
G
Thank you very much for answering!
Best wishes,
Christoph
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523
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Institute
on the summary.gam
is probably just to compare fit indices like Log Likelihoods.
If anyone has any other suggestions, though, please do let me know.
Thanks so much.
Will Shadish
On 6/7/2013 3:02 PM, Gavin Simpson wrote:
On Fri, 2013-06-07 at 13:12 -0700, William Shadish wrote:
Dear
:
g xc %in% g
134
$gam
Family: binomial
Link function: logit
Formula:
y ~ s(xc) + z + int
Estimated degrees of freedom:
1 total = 4
attr(,class)
[1] gamm list
--
Gavin Simpson, PhD [t] +1 306 337 8863
Adjunct Professor
labelled these as MDSx. If this bothers you so, add your own
labels:
require(vegan)
data(dune)
sol - metaMDS(dune)
plot(sol, xlab = NMDS1, ylab = NMDS2)
HTH
G
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Gavin Simpson, PhD [t] +1 306 337 8863
Adjunct Professor, Department of Biology[f] +1 306 337 2410
HTH
G
--
Gavin Simpson, PhD [t] +1 306 337 8863
Adjunct Professor, Department of Biology[f] +1 306 337 2410
Institute of Environmental Change Society [e] gavin.simp...@uregina.ca
523 Research and Innovation Centre [tw] @ucfagls
University of Regina
Regina, SK
, isoMDS),
autotransform =TRUE, wascores = TRUE, expand = TRUE, trace = 2)
plot(parth.mds, type = p)
Thanks in advance,
Kumar
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f
the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL
represent the mean of the
response for the reference level(s) of factor terms in the model.
The intercept is separates from the penalised spline terms in the model.
HTH
G
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%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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UK. WC1E 6BT. [w] http
the
object
being subscripted.
I promise to delete the data once I have tracked the problem
down.
Cheers,
G
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~
%~%~
%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography
tracked the problem down.
Cheers,
G
--
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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...
HTH
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679
/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0
it broke lines
where it could.
In short get out of the habit of writing long lines of R code; you'll be
better in the long run laying your code out logically.
HTH
G
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
editor which can break the
command properly.
All the best
On 13 April 2012 19:33, Gavin Simpson gavin.simp...@ucl.ac.uk wrote:
On Fri, 2012-04-13 at 17:46 +0800, Wincent wrote:
Dear useRs,
I am writing a vignette for a package, which contains long command like
this,
reduce(Lipset_cs
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Dr. Gavin Simpson [t] +44 (0
/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building
-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building
commented, minimal, self-contained, reproducible code.
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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and provide commented, minimal, self-contained, reproducible code.
--
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building
the above.
HTH
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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??
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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. ;-)
Peter Ehlers
On 2011-11-16 12:12, Gavin Simpson wrote:
On Wed, 2011-11-16 at 14:29 -0500, R. Michael Weylandt wrote:
Suppose your matrix is called X.
? sample
X[sample(nrow(X)),]
That will shuffle the rows at random, not permute within the rows.
Here is an alternative
-guide.html
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
of working, especially as we have no good ecological grounds
for doing so and who knows what information these species could be
telling us if we just listened to them instead of discarding them.
HTH
G
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%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson
code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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,site.codings,kind=sd,conf=0.90,draw=polygon)
I see there is a command called show.groups but I cant work out how to use
it to access the plotcolor file.
Any help appreciated.
--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679
, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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the posting guide http://www.R-project.org/posting-guide.html
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20
-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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Dr. Gavin Simpson
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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, but just curious as to
whether this is something known and fixable?
Thanks
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
and provide commented, minimal, self-contained, reproducible code.
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%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
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at the moment?
Cheers,
Briony
On Tue, Sep 13, 2011 at 2:53 AM, Gavin Simpson [via R]
ml-node+s789695n3807984...@n4.nabble.com wrote:
On Mon, 2011-09-12 at 03:24 -0700, Briony wrote:
Thank you very much for the suggestion. And while I'm here, thank you for
vegan and the documentation
-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
version to do it.
packfor is part of the *sedar* project on R-forge. You can get a binary
or sources from:
http://r-forge.r-project.org/R/?group_id=195
HTH
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL
://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44
)
On Wed, Aug 17, 2011 at 5:18 AM, Gavin Simpson gavin.simp...@ucl.ac.uk
wrote:
On Tue, 2011-08-16 at 17:46 -0700, ivo welch wrote:
I think I found a bug in the Cairo library, plus weird behavior in
both the Cairo and the normal pdf device. The baseline of the spades
symbol seems
], labels = rownames(sp.scrs),
col = red, cex = 0.7)
box()
HTH
G
Any help appreciated.
cheers
Andy
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson
the
functions/vignettes.
Thank you.
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/
UK. WC1E 6BT
(Z, c(1,2), Q, -)
does what you wanted. c(1,2) is the `MARGIN` argument over the
dimensions that Q will be swept from.
HTH
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/
UK. WC1E 6BT. [w
a
2
zz - unname(z)
zz
[1] 2
names(z) - NULL
z
[1] 2
Cheers,
Bert
On Tue, Jul 26, 2011 at 1:18 PM, Gavin Simpson gavin.simp...@ucl.ac.uk
wrote:
On Tue, 2011-07-26 at 16:43 +0100, Barry Rowlingson wrote:
On Tue, Jul 26, 2011 at 4:21 PM, ascoquel ascoq...@yahoo.fr wrote:
Hi
code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http
/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography
the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0
-guide.html
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Dr. Gavin
.
From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf
Of Gavin Simpson [gavin.simp...@ucl.ac.uk]
Sent: Monday, May 23, 2011 8:27 AM
To: guy33
Cc: r-help@r-project.org
Subject: Re: [R] Problem with Princurve
On Thu, 2011-05-19 at 06
-guide.html and provide commented,
minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin
this that an R equivalent of:
http://lmgtfy.com/
would be handy ;-)
Or it slightly cruder cousin...
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e
:
It helped a lot indeed, thank you very much!
Now I understand why it was a problem for persp!
Daniel
2011-03-30 10:31 keltezéssel, Gavin Simpson írta:
On Wed, 2011-03-30 at 09:55 -0700, Kehl Dániel wrote:
Dear David,
I think that is a small bug too, maybe because the function
commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/
UK. WC1E 6BT. [w] http
://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson
appreciated,
Best wishes,
Matthew
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower
command to get that multiplication done
without cbinding the 2 columns together that way.
You might have been thinking of sweep():
sweep(scalermca[,1:2], 2, c(0.827094,-0.7644828), *)
snip/
HTH
G
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Dr. Gavin Simpson
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0
to a variable. All variables must be numeric.
Missing values (NAs) are allowed.
So, I'm under the impression it handles NAs on its own ?
- Dario.
Original message
Date: Thu, 27 Jan 2011 12:53:27 +
From: Gavin Simpson gavin.simp...@ucl.ac.uk
Subject: Re: [R] agnes clustering
have
proper log likelihoods and you can compute/extract AIC simply using
them.
Regards,
Jason
HTH
G
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson
-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/
UK
.
HTH
G
On Wed, Jan 26, 2011 at 11:41 PM, Gavin Simpson
gavin.simp...@ucl.ac.uk wrote:
On Wed, 2011-01-26 at 19:25 -1000, Ahnate Lim wrote:
Even when I try to predict y values from x, let's say I want
to predict y at
x=0. Looking at the graph from
.
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Dr. Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
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