Re: [R] R plot-par(mfrow=c(x,y)) on multiple pages

Dear Jim, Your wild guess was a good guess :=) Thanks to you and Sarah for your comments. Regards, Mohsen On Wed, Jan 20, 2016 at 6:08 PM, Jim Lemon wrote: > Hi Mohsen, > I'll have a wild guess at this. I suspect that you have either calculated a > value for the ylim=

[R] strange answer when using 'aggregate()' with a formula

Could you kindly test the following codes? It is because I found strange answer when 'aggregate()' is used with a formula. I am trying to count how many missing data entries are in each group. For this exercise, I created data as below: > tmp <- data.frame(grp=c(2,3,2,3), y=c(NA, 0.5, 3,

[R] tcltk: write '[' and ']' in a table cell

I know it should not be difficult to write the string: i<-4 j<-17 lbl<-paste0("[", i, ", ", j, "]") # to a table, but I'm having a devil of a time trying to figure out how to do it. # the following gives lbl surrounded by braces. tt<-tktoplevel() tfr <- tkframe(tt) tkgrid(tfr) junk<-tclArray()

Re: [R] Fwd:

Hi maryam, I think you have just restricted yourself to zero and negative numbers for the new cases. Well, I suppose there are imaginary numbers... Jim On Thu, Jan 21, 2016 at 8:26 AM, maryam firoozi via R-help < r-help@r-project.org> wrote: > Hello, > i made a population about 4500

Re: [R] Splitting strings in data files R

> On Jan 20, 2016, at 3:33 PM, Zilefac Elvis wrote: > > I did not want to include attachments but as they are requested I am > attaching the original files. > File1=dx701S001 > > File2= dt402DAF0 These are fixed width files. The "upper-left corner of the file looks

Re: [R] R editor for Mac

Christopher, Download TextWrangler from App store. I’m using it and its very convenient. Regards, Sunny > On 20-Jan-2016, at 11:52 PM, Christofer Bogaso > wrote: > > Hi, > > Could you please suggest a good R editor for Mac OS X (10.7.5) > Previously my operating

[R] Fwd:

Hello, i made a population about 4500 individual.this has two sex(female and male).they had pedigree. i wanted to enter new indiviual but their ID of indiviual mustnot be same perivous and their ID number mustnot be bigger than 4500. first population's ID number is 1:4500. how can i handel it?

Re: [R] strange answer when using 'aggregate()' with a formula

Dear Chel Hee Lee, With the formula method, the default na.action is na.omit; thus, > aggregate(y~grp, data=tmp, function(x) sum(is.na(x)), na.action=na.pass) grp y 1 2 1 2 3 0 I hope this helps, John - John Fox, Professor McMaster University Hamilton,

Re: [R] R editor for Mac

Hello Christofer! For text-editing the R.app GUI has always been fabulous. An old mainstay on the Mac (after Apple's TextEdit) has been TextWrangler, and its big-brother, BBEdit. For development RStudio is quite nice, and--based partly on RStudio's offering of a Vim-compatibility mode--Vim has

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

Thanks for pointing that out, Chris. That was a thoughtless typo on my part when I was simplifying my model for the sake of posting. I've run a whole set of models without any problems/warning. My main question is regarding the difference between the concordance estimate that summary(fit) reports

Re: [R] R editor for Mac

Hi: Both the default Mac OS X installation of R (with the GUI) as well as RStudio, have very nice editors for coding in R. -Roy > On Jan 20, 2016, at 10:22 AM, Christofer Bogaso > wrote: > > Hi, > > Could you please suggest a good R editor for Mac OS X

Re: [R] R editor for Mac

On Wed, 20 Jan 2016, Christofer Bogaso wrote: Could you please suggest a good R editor for Mac OS X (10.7.5) Previously my operating system was Windows and there I used Notepad++, I really had very nice experience with it. However I dont see any Mac version is available for Mac. Emacs might

[R] Simple syntax question (I think)

Could someone please explain to me my mal-understanding of the following, which I expected to give the same results without errors. TIA. -- Bert > z <- list(x=1) > z[[2]] <- 3 > z $x [1] 1 [[2]] [1] 3 > list(x = 1)[[2]] <- 3 Error in list(x = 1)[[2]] <- 3 : target of assignment expands to

[R] problem of interpretation using mediation package

Dear all, I am using the package mediation in order to perform a parametric mediation analysis on survival data. I have 8 variables: - Mediator - Treat - time (days) - death (event) - X1-X4 (confounding variables) I ran the following code to estimate the causal mediation effects. med.m =

[R] spline.correlog (ncf package) - Error message: tol must be strictly positive and finite

Dear all I am trying to run the spline.correlogram in package ncf to check for spatial autocorrelation in the residuals of my models, but I get an error message: Error in smooth.spline(u, v, df = df) : 'tol' must be strictly positive and finite I have googled the error and I got to the

Re: [R] R editor for Mac

On 20/01/2016 1:22 PM, Christofer Bogaso wrote: Hi, Could you please suggest a good R editor for Mac OS X (10.7.5) Previously my operating system was Windows and there I used Notepad++, I really had very nice experience with it. However I dont see any Mac version is available for Mac.

[R] R editor for Mac

Hi, Could you please suggest a good R editor for Mac OS X (10.7.5) Previously my operating system was Windows and there I used Notepad++, I really had very nice experience with it. However I dont see any Mac version is available for Mac. Appreciate your positive feedback. Thanks and regards,

Re: [R] (no subject)

Hello, Please respond to the list, not just to me. If you just want the first vector ofm the matrices, try the following. fun <- function(..., n, replace = FALSE){     m <- do.call(rbind, list(...))     idx <- sample(nrow(m), n, replace = replace)     m[idx, 1] } n <- 3 * nrow(Young.list1) *

[R] Error using Rhipe

I am integrating with R Hadoop using Rhipe and my configuration is as follows: • Ubuntu 14. • Hadoop 1.0.3 • R 3.2.2 • Rhipe 0.73.1 • library rJava installed When starting at the R environment rhinit () the following message appears: > rhinit () Rhipe: Using Rhipe.jar file

Re: [R] Simple syntax question (I think)

> On Jan 20, 2016, at 12:26 PM, Bert Gunter wrote: > > Could someone please explain to me my mal-understanding of the > following, which I expected to give the same results without errors. > > TIA. > > -- Bert > >> z <- list(x=1) >> z[[2]] <- 3 >> z > $x > [1] 1 > >

Re: [R] Simple syntax question (I think)

On 20/01/2016 2:21 PM, Bert Gunter wrote: Thanks Marc. Actually, I think the cognate construction for a vector (which is what a list is also) is: > vector("numeric",2)[2] <- 3 Error in vector("numeric", 2)[2] <- 3 : target of assignment expands to non-language object but this works: >

Re: [R] R editor for Mac

Dear Christofer Bogaso, Re: > Could you please suggest a good R editor for Mac OS X (10.7.5) Indeed, as Roy Mendelssohn wrote, the editor built into "R.app", the GUI program which is part of the standard R for OS X, has a beautiful editor, complete with syntax colouring and bracket

Re: [R] R editor for Mac

If you don't want to run RStudio, Sublime Text has both great R code syntax highlighting/formatting and a REPL mode for an interactive console in-editor. Atom also has decent R support. They both play well with "Dash" which is an alternative way (separate app) to lookup R docs on OS X. On Wed,

Re: [R] R editor for Mac

On 20/01/2016 2:22 PM, Franklin Bretschneider wrote: Dear Christofer Bogaso, Re: > Could you please suggest a good R editor for Mac OS X (10.7.5) Indeed, as Roy Mendelssohn wrote, the editor built into "R.app", the GUI program which is part of the standard R for OS X, has a beautiful

Re: [R] Simple syntax question (I think)

Thanks Marc. Actually, I think the cognate construction for a vector (which is what a list is also) is: > vector("numeric",2)[2] <- 3 Error in vector("numeric", 2)[2] <- 3 : target of assignment expands to non-language object but this works: > "[<-"(vector("numeric",2),2,3) [1] 0 3 I would

Re: [R] Simple syntax question (I think)

Note that the expression x[1] <- 10 is equivalent not to `[<-`(x, 1, value=10) but to x <- `[<-`(x, 1, value=10) so there is no conflict between your two expressions. Saying c(1,2,3) <- `[<-`(c(1,2,3), 1, value=10) is not allowed because there is no name to assign something to. There

Re: [R] R editor for Mac

> On 20 Jan 2016, at 20:22, Franklin Bretschneider wrote: > > Dear Christofer Bogaso, > > > Re: > > >> Could you please suggest a good R editor for Mac OS X (10.7.5) > > > > Indeed, as Roy Mendelssohn wrote, the editor built into "R.app", the GUI > program which is

Re: [R] Simple syntax question (I think)

Thanks to both Bill and Duncan for their help. As I said, my mal-understanding of the syntax. Best, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed,

Re: [R] Splitting strings in data files R

Looks like homework. R. Mark Sharp, Ph.D. Director of Primate Records Database Southwest National Primate Research Center Texas Biomedical Research Institute P.O. Box 760549 San Antonio, TX 78245-0549 Telephone: (210)258-9476 e-mail: msh...@txbiomed.org > On Jan 20, 2016, at 2:53 PM, R.

[R] Splitting strings in data files R

Please I need help processing files with strings in R. All the files have two patterns (thus,examine separately): Pattern 1 (see file1 below): Delete Lines 1,2 & 4 in file1. Line 3 contains the column names. Then find anything as.character and delete. Please do not delete any values (e.g.

Re: [R] R plot-par(mfrow=c(x,y)) on multiple pages

Use a device like pdf() or postscript() that supports multiple pages. Or start a new default device with dev.new() so you can see two figures simultaneously. Sarah On Wed, Jan 20, 2016 at 3:37 PM, Mohsen Jafarikia wrote: > Hello everyone: > > I have 12 plots that I am using

[R] R plot-par(mfrow=c(x,y)) on multiple pages

Hello everyone: I have 12 plots that I am using par(mfrow=c(3,2)) to have 6 of them in a single page. R only prints the 6 first graph in a single page. Any comments how I can ask R to print all 12 graphs in two pages. Thanks very much, Mohsen __

Re: [R] tcltk tkwidget(..."table")

Thanks, Peter. I'm sure that's right, but it requires knowing: (1) that there's something called the "width subcommand", and (2) how to format the call to that command/subcommand. I was able to do it eventually but only after a few hours of effort searching the web for help. E.g. with a table

Re: [R] (no subject)

Hi Maryam, c(Young.list1[sample(1:20,5),], Young.list2[sample(1:20,5),], Young.list3[sample(1:20,5),]) # or for a more general solution nrows<-dim(Young.list1)[1] c(Young.list1[sample(1:nrows,nrows/4),], Young.list2[sample(1:nrows,nrows/4),], Young.list3[sample(1:nrows,nrows/4),]) Jim On

Re: [R] tcltk tkwidget(..."table")

> On 19 Jan 2016, at 20:48 , Dalthorp, Daniel wrote: > > Does anyone know a simple way to create a tcltk table with columns of > varying widths? Create a table, then set the width of the columns with the width subcommand? -pd pathName width ?col? ?value col value ...? If

Re: [R] R plot-par(mfrow=c(x,y)) on multiple pages

Hi Mohsen, I'll have a wild guess at this. I suspect that you have either calculated a value for the ylim= argument or used explicit values for ylim= in the first plot, then propagated the error by copying and pasting. Jim On Thu, Jan 21, 2016 at 8:56 AM, Mohsen Jafarikia

[R] Gsarima and Method

Dear All, While tuning some time series model with gsarima (which is primarily a wrapper for arima) from the astsa package, I encounter the following error message Error in stats::arima(xdata, order = c(p, d, q), seasonal = list(order = c(P, : non-stationary seasonal AR part from CSS

[R] adehabitat and tcltk

Hi there, is anybody knows how to install adehabitat on latest release? because r said that need tcltk but this package is not available for the latest version. Can anybody help me? Emiliano Manzo emiliano.ma...@gmail.com __ R-help@r-project.org

Re: [R] Splitting strings in data files R

> On Jan 20, 2016, at 12:53 PM, Zilefac Elvis via R-help > wrote: > > > > > Please I need help processing files with strings in R. All the files have > two patterns (thus,examine separately): You do need help, that much is clear. But the first thing to do is retrace

Re: [R] R plot-par(mfrow=c(x,y)) on multiple pages

On Wed, Jan 20, 2016 at 4:56 PM, Mohsen Jafarikia wrote: > Thanks very much for the comment. > > I was also wondering why all the y-axis on all 12 plots are similar to > the first plot. I have 12 plots and scale of the values for these > plots are different. It seems R is

Re: [R] R plot-par(mfrow=c(x,y)) on multiple pages

Thanks very much for the comment. I was also wondering why all the y-axis on all 12 plots are similar to the first plot. I have 12 plots and scale of the values for these plots are different. It seems R is using the x-axis for each individual plot correctly but y-axis is the same for all 12

Re: [R] R editor for Mac

Emacs with ESS is very simple to operate when you use the menu. See Paul Johnson's document [Emacs has no learning curve: Emacs and ESS] http://pj.freefaculty.org/guides/Rcourse/emacs-ess/emacs-ess.pdf Rich On Wed, Jan 20, 2016 at 2:59 PM, Duncan Murdoch wrote: > On

[R] Where to get quantiles (1st parameter q) for pnorm? (Normal approximation to binomial distribution)

I'm doing Normal approximation to binomial distribution. My variables are generated by rbinom. Here: http://msemac.redwoods.edu/~darnold/math15/spring2013/R/Activities/ApproxBinomWithNorm.html it's claimed that normal approximation is done using the command pnorm. Question: Where to get

Re: [R] config args for Rmpfr to link to mpfr and gmp?

Dear Seija, > Seija Sirkiä > on Wed, 20 Jan 2016 10:01:05 +0200 writes: > Hello, > Sorry to bother with you with this, I'll be very brief: How do I communicate to the Rmpfr package that the (correct versions of) mpfr and gmp libraries are somewhere

Re: [R] Where to get quantiles (1st parameter q) for pnorm?(Normalapproximation to binomial distribution)

Hi, Matti, use ?pnorm and read about qnorm. Hth -- Gerrit On Wed, 20 Jan 2016, mviljamaa wrote: I'm doing Normal approximation to binomial distribution. My variables are generated by rbinom. Here:

Re: [R] LSD value

How can this be achieved in 2-way or 3 way experiments? On Monday, January 18, 2016 7:31 AM, Jianling Fan wrote: Thanks David, That's exactly what I need! Thanks very much for your example. Best regards, Julian On 18 January 2016 at 13:00, David L

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

I only get the digest, sorry if this has already been answered. When I run your code (after creating some data) I get a warning that "weights are ignored in clogit". This is a result of miscalling the clogit function. The first 2 commas should be +s. library(survival) nn <- 1000 dat <-