Re: [R-pkg-devel] Problem with loading package "devtools" from CRAN.

I also had the problem that devtools didn't install. I used update.packages(ask =FALSE) and that solved the problem. Before that I tried to locate the culprit but it was not one of the direct dependencies of devtools. Georgi Boshnakov Sent from Outlook for Android<https://aka.ms/AAb9

Re: [R-pkg-devel] Need help with "Lost braces" in R under development checks

it has uncovered thousands of actual typos and similar. As to the 'invalid url', you can ignore it when you are sure that it is correct - some sites don't like being accessed programatically and start blocking the caller (eg if you run R checks several times in succession). Georgi Boshnakov Sent

Re: [R-pkg-devel] Bioconductor reverse dependency checks for a CRAN package

Have you tried revdepcheck (https://github.com/r-lib/revdepcheck)? It handles the dependencies and uses a local cache for the downloaded packages. It also checks packages with the new and old versions. As far as I know, it doesn't handle the system requirements though. Georgi Boshnakov

Re: [R-pkg-devel] lost braces note on CRAN pretest related to \itemize

a description environment, not itemize (in which its only argument doesn't need braces). Secondly, in the value section, \item is implicitly enclosed in \describe and you don't need to include the latter. Georgi Boshnakov Sent from Outlook for Android<https://aka.ms/AAb9

Re: [R-pkg-devel] Warning from orphaned package on check page

installed. Another option is to take over maintenance of that package. In your case, with so many dependencies someone may be working on bringing it back. Georgi Boshnakov Sent from Outlook for Android<https://aka.ms/AAb9ysg> From: R-package-devel on behalf of L

Re: [R-pkg-devel] Help with a github/Rstudio mess

If I understand correctly, the errors come from github actions run on github. I think that you should update them first, since github switched to new versions in the meantime. Georgi Boshnakov Sent from Outlook for Android<https://aka.ms/AAb9ysg> F

Re: [R-pkg-devel] Mysterious "invalid z limit"

specific. It may be a missing import or export, for example. Georgi Boshnakov Get Outlook for Android<https://aka.ms/AAb9ysg> From: R-package-devel on behalf of Duncan Murdoch Sent: Sunday, 8 January 2023, 10:05 To: Kevin R. Coombes ; R Package Devel

Re: [R-pkg-devel] Inquiry

tating clearly that such functions are internal is also sensible. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Rolf Turner Sent: 27 September 2022 02:38 To: Andrew Simmons Cc: List r-package-devel Subject: Re: [R-pkg-devel] Inquiry On Mon, 26 Sep 2022 20

Re: [R-pkg-devel] match.arg With S4 Methods and Missing Inputs

It turns out that it is not difficult to find, the excerpt below is from help(setMethod). Maybe mentioning this in help(setGeneric) would be helpful, as well. Georgi Boshnakov === Method definitions can have default expressions for arguments, but only if the generic function must

Re: [R-pkg-devel] match.arg With S4 Methods and Missing Inputs

You need to define the generic with a default value for this parameter. Methods can then have a different default value for it. I remember reading this in S4's documentation but don't remember where. Georgi Boshnakov Get Outlook for Android<https://aka.ms/AAb9

Re: [R-pkg-devel] submitting package update failed, since old version out of date (?)

When the previous version has problems, you get an email listing them, followed with something like 'Did you fix them? Please Reply-All...' Maybe you missed the last phrase? Georgi Boshnakov Get Outlook for Android<https://aka.ms/AAb9ysg> From: R-p

Re: [R-pkg-devel] How to debug build-time dynamic documentation issues?

in my case. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Georgi Boshnakov Sent: 13 August 2021 07:47 To: Pavel N. Krivitsky ; R Package Devel Subject: Re: [R-pkg-devel] How to debug build-time dynamic documentation issues? It may be worth checking if the users

Re: [R-pkg-devel] How to debug build-time dynamic documentation issues?

It may be worth checking if the users can install the package if you send them (1) tarball or (2) a binary build (if you don't have Windows, win-builder creates one). A user had a similar issue with a package Get Outlook for Android

Re: [R-pkg-devel] can't reproduce 'Additional issues' on CRAN with valgrind

. As to valgrind, I adapted a Github actions workflow kindly provided by Martin R. Smith which reproduced the errors from CRAN. Georgi Boshnakov == From: Bill Dunlap Sent: 07 August 2021 03:09 To: Georgi Boshnakov Cc: r-package-devel@r-project.org Subject: Re: [R

Re: [R-pkg-devel] can't reproduce 'Additional issues' on CRAN with valgrind

; My comment is indeed sloppy but the first byte is initialised to zero and the rest is used for writing only (valgrind has no way to know, of course, and it is fair to question how a human can possibly be sure). Thanks again, Georgi Boshnakov From: Bill Dunlap Sent: 02 August 2021 19:48

[R-pkg-devel] can't reproduce 'Additional issues' on CRAN with valgrind

ig' do not offer this information. Thanks, Georgi Boshnakov [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Scrapping R CRAN website from package

, revdepcheck (which does it on an epic scale). Georgi Boshnakov Get Outlook for Android<https://aka.ms/AAb9ysg> From: R-package-devel on behalf of Maciej Nasinski Sent: Friday, July 16, 2021 11:13:50 AM To: r-package-devel@r-project.org Subject: [R-pkg

Re: [R-pkg-devel] How to communicate WARNINGS fixed from *last* CRAN version of a package

>... Hence please reply-all and explain: Have these been fixed? Maybe 'reply-all' to CRAN team's email? Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Alberto Garre Sent: 22 June 2021 09:11 To: R-package-devel@r-project.org Subject: [R-pkg-devel]

Re: [R-pkg-devel] Troubleshoot unknown macro '\backslashemph' warning

or rbibutils). Georgi Boshnakov === diwan <- "@article{diwan_methods_1995, title = {Methods of developing a core collection of annual \\emph{{Medicago}} species}, volume = {90}, language = {en}, number = {6}, journal = {Theoretical and Applied Genetics}, author = {Diwan, N. and McInto

Re: [R-pkg-devel] Another newbie question: vignettes not appearing in GitHub hosted package

Vignettes are not built by default when using remotes::install_github, request it explicitly: remotes::install_github("cpsyctc/CECPfuns", build_vignettes = TRUE) Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Chris Evans Sent: 14 April 2021 1

Re: [R-pkg-devel] Problem with S4 method for plotting a raster file

0 'plot'), you would need to import plot methods from rgdal if that is the case (and maybe move rgdal from Suggests to Imports). Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Duncan Murdoch Sent: 14 April 2021 13:45 To: Jacob Nabe-Nielsen ; r-package-devel@r-p

Re: [R-pkg-devel] CRAN note about \href{https://doi.org/...}{label} in Rd files

R checks. I am pretty sure that \doi{} with the suggested syntax does produce proper links in the documentation. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Floris Vanderhaeghe Sent: 30 March 2021 14:45 To: r-package-devel@r-project.org Subject: [R-pkg-deve

Re: [R-pkg-devel] Two (newbie/luser) questions about adding CI to github hosted package

e, which sometimes threw errors, sometimes silently ignored the lines after the first. Maybe it's easiest just to require R >= "more recent version. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Dirk Eddelbuettel Sent: 16 March 2021 12:46 To: Duncan

Re: [R-pkg-devel] Support for several versions of another package

, CRAN accepts a package with that note. Georgi -Original Message- From: Iñaki Ucar Sent: 22 February 2021 10:51 To: Georgi Boshnakov Cc: Duncan Murdoch ; Gábor Csárdi ; R Package Development Subject: Re: [R-pkg-devel] Support for several versions of another package On Mon, 22 Feb 2021 at

Re: [R-pkg-devel] Support for several versions of another package

quot;PolynomF") >= "2.0.0") { assign("as.polylist", PolynomF::as_polylist, envir = topenv()) } ## add other renamed functions here NULL } This still raises a NOTE but is a change in a single place. Georgi Boshnakov -Original Message- Fr

Re: [R-pkg-devel] How to build *-package description from *-package.R files ... and a luser/newbie question about pkgdown

Please note that most rooygen2 users don't call the overview file 'pkgname-package' but just 'pkgname'. Also, these days people mostly use README.md for approximately that purpose and put a very minimal statement in pkgname-package or equivalent. Georgi Boshnakov -Original Message

Re: [R-pkg-devel] How to build *-package description from *-package.R files ... and a luser/newbie question about pkgdown

it in a browser by default. Also, it only rebuilds the pages that have changed since the previous built. So, it is useful also during development. I don't remember at the moment if you could even set it up to watch for changes in the package and rebuild the site behind the scene. Georgi Boshnakov

Re: [R-pkg-devel] CRAN check texi2dvi failure

is considered a bug and hs been recently fixed, see the atacjexchange question below and the relevant paragraph from LaTeX News. Probably the linux machines have updated their TeX installations. In short, changing the space tp say + delimiter for \verb command should fix the issue. Georgi

Re: [R-pkg-devel] Debugging library.dynam to include a manual shared object

> Building this works fine in RStudio with devtools::load_all('.'), but > | when I try to run R CMD INSTALL,... Note that the devtools equivalents of 'R CMD build/check/install' are devtools::build(), devtools::check(), devtools::install(). devtools::load_all() has a different purpose.

Re: [R-pkg-devel] checking PDF version of manual without hyperrefs or index ... ERROR

This seems to be the code for "small latin capital fl". Such characters often occur when copying text from external programs (similar to the familiar problem with fancy quotes). If that is the case, Just changing the offending symbol to the two letters 'f' and 'l' should suffice

[R-pkg-devel] dependency fails checking a package on ASAN/UBSAN (on r-hub)

or another but do I need to give additional parameters? The report from r-hub is at HTML<https://builder.r-hub.io/status/rbibutils_1.3.tar.gz-74c7a41c4a1d4c36940fcc78b85e800b> Georgi Boshnakov [[alternative HTML version deleted]] __ R-p

Re: [R-pkg-devel] force revdepcheck to use local version of a dependency

Boshnakov -Original Message- From: Gábor Csárdi Sent: 28 September 2020 18:46 To: Georgi Boshnakov Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] force revdepcheck to use local version of a dependency You can define the special dependency of the revdep-checked package

[R-pkg-devel] force revdepcheck to use local version of a dependency

. Package A has many reverse dependencies. I wish to check if an update to package B will break some of the reverse dependencies of A and/or repair broken reverse dependencies of A. It is obvious to update B on CRAN but this may lead unnecessarily to a number of CRAN updates. Georgi Boshnakov

Re: [R-pkg-devel] Use of `:::` in a package for code run in a parallel cluster

to export and hence document this. Georgi Boshnakov PS Note that there is no such thing as "public namespace". -Original Message- From: R-package-devel On Behalf Of David Kepplinger Sent: 13 September 2020 20:52 To: R Package Devel Subject: [R-pkg-devel] Use of `:::`

Re: [R-pkg-devel] check cross-references error: Non-file package-anchored link(s)

topic foo in package pkg if it does not find file foo.html." Unless I am missing something, it seems that it would be relatively painless to reverse the logic of the current behaviour of the help system, i.e. to start looking first for the topic and then for a file. Georgi Boshnakov ---

Re: [R-pkg-devel] check cross-references error: Non-file package-anchored link(s)

The Rd file is mplus.Rd, so ‘[lubridate:mplus]{lubridate::add_with_rollback()}’ would do. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of David Hugh-Jones Sent: 16 June 2020 07:51 To: Duncan Murdoch Cc: List r-package-devel Subject: Re: [R-pkg-devel] check

Re: [R-pkg-devel] *not* re-making package if contents haven't changed

Maybe let 'git' decide which files have changed? Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Greg Minshall Sent: 01 June 2020 03:57 To: r-package-devel@r-project.org Subject: [R-pkg-devel] *not* re-making package if contents haven't changed hi. i use emacs

Re: [R-pkg-devel] MathJax for Rd files

but it currently loads only the RdMacro's from its package. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Viechtbauer, Wolfgang (SP) Sent: 13 May 2020 17:14 To: Helmut Schütz ; tiagooliv...@gmail.com; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] MathJax

Re: [R-pkg-devel] Error vignette rebuilding and package imports when re-submitting package

Just add importFrom(Rdpack, reprompt) in the NAMESPACE file (any function from Rdpack will do). Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Paul SAVARY Sent: 15 April 2020 10:15 To: r-package-devel@r-project.org Subject: [R-pkg-devel] Error vignette

Re: [R-pkg-devel] First R package, want to release to CRAN, have some questions about R CMD check and README.md

a link in the README(.md) to the CRAN page of the package, even though on CRAN this looks strange. The most straightforward is probably a badge. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Michael Dewey Sent: 08 March 2020 12:24 To: Jeffry Hesse ; Jeff

Re: [R-pkg-devel] [FORGED] Re: Help on Windows CRAN Check

e error be masked or delayed and pop up far away. Georgi Boshnakov -Original Message- From: R-package-devel On Behalf Of Rolf Turner Sent: 05 March 2020 08:46 To: Tomas Kalibera Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] [FORGED] Re: Help on Windows CRAN Chec

Re: [R-pkg-devel] Possibly invalid URL note about canonical form of link to cran package

I believe that the canonical form is without 'cloud': https://cran.r-project.org/package=kernlab Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Joris Meys Sent: 17 December 2019 09:30 To: r-package-devel@r

Re: [R-pkg-devel] DOI in of package in DESCRIPTION file

Something like the following should do: Note that https://zenodo.org/record/3229615 is an URL. Not doi. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Rainer M Krug Sent: 16 December 2019 14:35 To: List r

Re: [R-pkg-devel] Require -package.Rd?

Boshnakov Cc: Viechtbauer, Wolfgang (SP); r-package-devel@r-project.org Subject: Re: [R-pkg-devel] Require -package.Rd? On Tue, Sep 24, 2019 at 8:07 AM Georgi Boshnakov wrote: > > It is worth noting that > > help(package="") > > shows file -package.Rd, while > &g

Re: [R-pkg-devel] Require -package.Rd?

ar at the top. If html is not the default rendering, one can use help(package = "Matrix", help_type = "html") to get this. Georgi Boshnakov -Original Message- From: Viechtbauer, Wolfgang (SP) [mailto:wolfgang.viechtba...@maastrichtuniversity.nl] Sent: 24

Re: [R-pkg-devel] Require -package.Rd?

dley Wickham's tools (at least 'pkgdown') recommend and use .Rd, instead of -package.Rd as overall package description. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Viechtbauer, Wolfgang (SP) Sent: 24 Septem

Re: [R-pkg-devel] unable to run 'make clean' in 'src'

for ming_w64 above is (still) needed. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Spencer Graves Sent: 18 September 2019 07:47 To: R Package Development Subject: [R-pkg-devel] unable to run 'make clean' in 'src' Hello

Re: [R-pkg-devel] URL of a frame (or a vignette)?

heir 'Comments' area but they did not respond. Georgi Boshnakov -Original Message- From: Spencer Graves [mailto:spencer.gra...@effectivedefense.org] Sent: 01 September 2019 20:19 To: Duncan Murdoch; Georgi Boshnakov; Jeff Newmiller; r-package-devel@r-project.org Subject: Re: [R-pkg-d

Re: [R-pkg-devel] URL of a frame (or a vignette)?

September 2019 16:33 To: Georgi Boshnakov; Jeff Newmiller; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] URL of a frame (or a vignette)?   What's the difference between https://cran.r-project.org/package=bssm/vignettes/bssm.pdf   and https://cran.r-project.org/web/packages

Re: [R-pkg-devel] URL of a frame (or a vignette)?

Correction: https://cran.r-project.org/package=bssm/vignettes/bssm.pdf -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Georgi Boshnakov Sent: 01 September 2019 15:57 To: Spencer Graves; Jeff Newmiller; r-package-devel@r-project.org

Re: [R-pkg-devel] URL of a frame (or a vignette)?

ot;html") The latter has the advantage that it present links in a browser even if by default the help is presented in text mode. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Spencer Graves Sent: 01 September

Re: [R-pkg-devel] General considerations about vignettes

(https://cran.r-project.org/package=Countr) uses this approach for its vignettes (sorry for the self-reference). Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Mark van der Loo Sent: 30 August 2019 16:08 To: Michael

Re: [R-pkg-devel] Literal LaTeX Text in Function Arguments

ot;\... continued \\lmydots \\mydots" \ldots is expanded but the other macros are not. Note that the expansion of \ldots here is due is due to the specific rendering for LaTeX, which replaces \\ldots by three dots (...), and doesn't use my Rd definition

Re: [R-pkg-devel] Literal LaTeX Text in Function Arguments

I have seen similar behaviour for "\dots" in R strings in the Examples section. I tried some hacks, such as redefining the '\ldots' but they don't work, since the Rd parser works recursively. Georgi Boshnakov From: b...@denney.ws [b.

Re: [R-pkg-devel] Literal LaTeX Text in Function Arguments

copy and paste it in the Rd file generated by roxygen2, then run 'R CMD build' and 'R CMD check' (outside devtools). Georgi -Original Message- From: b...@denney.ws [mailto:b...@denney.ws] Sent: 23 August 2019 15:27 To: Georgi Boshnakov; r-package-devel@r-project.org Subject: RE: [R-pkg-

Re: [R-pkg-devel] Literal LaTeX Text in Function Arguments

Rd is not LaTeX, although it resembles it. You should use only markup described in WRE. For example, \dots is for the use case you mention. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of b...@denney.ws Sent

Re: [R-pkg-devel] CRAN pre-test failed on NOTE "no visible binding for global variable"

at they are not commonly used names like 'x'. If that is not practical and you use non-standard evaluation a lot, consider '.data' from package 'lang' , see its documentation and/or Google it to find out how to use it. #' @importFrom rlang .data Georgi Boshnakov -Original Message- Fr

Re: [R-pkg-devel] implications of staged install for data processing packages

hose paths that contain the temporary installation directory. Such paths can be obtained, for example, with calls to system.path(), as illustrated by Tomas. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Florian Oswal

Re: [R-pkg-devel] .Rd, LaTeX and Unicode

Sorry, I failed to clarify that the link to ltnews.pdf was the point of my message. In some ways it is definitive from the LaTeX team. My understanding is that option 'mathletters' is not the default in ucs, since it produces math Greek and Hebrew letters also in text mode. Georgi Boshnakov

Re: [R-pkg-devel] .Rd, LaTeX and Unicode

Since April 2018 'utf8' is the default input encoding in LaTeX, see http://anorien.csc.warwick.ac.uk/mirrors/CTAN/macros/latex/doc/ltnews.pdf and they added some symbols in December. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r

Re: [R-pkg-devel] checks on CRAN notes 'examples_i386', but checks elsewhere do not

into the tarball, use file.Rbuildignore to tell the builder not to include them. Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Kassel Hingee [kassel.hin...@research.uwa.edu.au] Sent: 07 June 2019 05:35 To: r

Re: [R-pkg-devel] Function Overloading of S4 Methods

sible. In R you can define methods with different arguments, e.g. by declaring your function with a signature like: larger <- function(x, y, first, second) but then to use argument 'first' you need to use it something like 'larger(first = whatever, ...)'. Georgi Boshnakov -Original Me

Re: [R-pkg-devel] Registered S3 methods from standard package

ome preparation and call directly plot.default(), so they both bypass the method and see graphics::plot.default, not yours, see e.g. plot.ts(). Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Colin Gillespie Sent: 13

Re: [R-pkg-devel] can't commit changes to a package on R-Forge

Thanks, I didn't realise that password approach has been dropped. Georgi Boshnakov -Original Message- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: 06 April 2019 12:40 To: Georgi Boshnakov; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] can't commit changes

[R-pkg-devel] can't commit changes to a package on R-Forge

any way to make it ask me for credentials and will appreciate any help. Georgi Boshnakov [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] attempt to re-insert old removed package

It depends on the specific case but attempting to check with the previous maintainer/author looks like a courteous first step before taking over. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Dirk Eddelbuettel

Re: [R-pkg-devel] Help request on Rd2pdf | Fwd: [CRAN-pretest-archived] CRAN submission spsh 1.0.190311

like \code{some code} but omitted the closing curly parenthesis. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Tobias KD Weber Sent: 13 March 2019 09:50 To: r-package-devel@r-project.org Subject: [R-pkg-devel] Help re

Re: [R-pkg-devel] Package update submission to CRAN fails on pretest

they ask if care has been taken about NOTEs/WARNINGs for the current CRAN version, since some tests are not done during submission, but this doesn't seem the case here. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf

Re: [R-pkg-devel] creating a link to a vignette in a .Rd file

l be directly usable also when the help is rendered in text mode. The vignette() command could also be put in the "Examples" section. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Fox, John Sent: 20 No

Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio

but sometimes compilation may be needed even if devtools thinks otherwise. Georgi Boshnakov -Original Message- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: 07 November 2018 00:26 To: Rampal Etienne; Georgi Boshnakov; r-package-devel@r-project.org Subject: Re: [R-pkg-devel

Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio

on one line and make sure that there is a single space between them. This should work if your problem is what I think. By the way, in such cases you will get more informative messages if you run devtools::check(). -- Georgi Boshnakov From: R

Re: [R-pkg-devel] Trying to work around missing functionality

t; eb$fn function(x) x^2 + 1 > > ## ea$fn is still the same: > ea$fn function(x) x^2 - 2*x + 1 > Obviously, in this case some further arrangements are needed for the environments to be made available to the external world. Hope this helps, Georgi Boshnakov -Original Messa

Re: [R-pkg-devel] CRAN note: src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS

) $(FLIBS) c.f. https://github.com/RcppCore/RcppArmadillo/blob/58b11c738d31b9e8d9fa6b39e2290b2ac08aefc4/inst/skeleton/Makevars#L11-L14 Sincerely, JJB On 8/20/18, 5:40 PM, "R-package-devel on behalf of Dirk Eddelbuettel" wrote: On 20 August 2018 at 22:14, Georgi Boshn

[R-pkg-devel] CRAN note: src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS

will disappear if I rebuild the package with an up-to-date version of Rcpp and maybe rerunning RcppAttributes().? Georgi Boshnakov == Check: use of SHLIB_OPENMP_*FLAGS in Makefiles Result: NOTE src/Makevars: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS

Re: [R-pkg-devel] Printing examples conditionally on another package in Suggests

Maybe Martin Maechler's post in response to a similar question answers your question: https://stat.ethz.ch/pipermail/r-package-devel/2018q2/002780.html In summary, wrap the code in: if (requireNamespace("MASS", quietly = TRUE)) withAutoprint({ your code }) Georgi

Re: [R-pkg-devel] Package builds, installs, and runs but does not pass devtools::check()

. See ?Startup, especially section Note. It is difficult to give more specific advice without details of your setup. Hope this helps, Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Michael Hannon

Re: [R-pkg-devel] Creating S3 methods for S4 classes

Dear Martin, Thanks for the clarification and sorry for the noise. Georgi -Original Message- From: Martin Maechler [mailto:maech...@stat.math.ethz.ch] Sent: 25 May 2018 09:11 To: Georgi Boshnakov Cc: joris.m...@ugent.be; R Package Development Subject: Re: [R-pkg-devel] Creating S3

Re: [R-pkg-devel] Errors in my package

; coef(xy.freekt) Then explore what is going on. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Steven Spiriti Sent: 24 May 2018 21:11 To: r-package-devel@r-project.org Subject: [R-pkg-devel] Errors in my package T

Re: [R-pkg-devel] Creating S3 methods for S4 classes

ict, will be used (if exported) as long as the package is attached. I may be wrong but for this or similar reasons I believe that 'stats4' needs to be in "Depends" to ensure that it shadows the base functions it redefines. Georgi Boshnakov > c

Re: [R-pkg-devel] Creating S3 methods for S4 classes

' has been left out of stats4. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Joris Meys Sent: 24 May 2018 13:17 To: R Package Development Subject: [R-pkg-devel] Creating S3 methods for S4 classes Dear all, per

Re: [R-pkg-devel] Explicitly Calling a Method of a specific Class in a Function

choose the appropriate method? You need to import 'sp' or something from it, in order to make the plot method for 'SpatialPolygons' available. You can do this by putting import(sp) in NAMESPACE or importFrom(sp, something), where 'something' is some object exported by 'sp'. Georgi Boshnakov -Or

Re: [R-pkg-devel] extending as.mcmc.list

The following is in your NAMESPACE: export(as.mcmc.list) Don't export as.mcmc.list, presumably this is the one from 'coda ' it is rarely your responsibility. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Joe

Re: [R-pkg-devel] Saving output of check()

Hi, Not really an answer but I only recently discovered devtools::revdep(), which automates checking reverse dependencies. Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of J C Nash [profjcn...@gmail.com

Re: [R-pkg-devel] Cannot submit package due to misspell note

Since this message appears also in R CMD check locally, maybe change in Duncan's text 'submission' to something like The Title field should be in title case! Your title is blah blah blah This is not in title case, which would be Blah, Blah, Blah" - Georgi Bosh

Re: [R-pkg-devel] Cannot submit package due to misspell note

Interval-Valued Symbolic >Data' Just copy the second line, which is the suggested title in 'title case'. (and write in the Note field on the submission page that the misspelled words are actually names, which you have checked) Georgi Boshnakov -Original Message- From: R-p

Re: [R-pkg-devel] Cannot submit package due to misspell note

inquires. -- Dr Georgi Boshnakov tel: (+44) (0)161 306 3684 School of Mathematics fax: (+44) (0)161 306 3669 Alan Turing Building 1.125 The University of Manchester email: georgi.boshna...@manchester.ac.uk Oxford Road Manchester M13 9PL UK

Re: [R-pkg-devel] Error from svDialogs unless attached to search path

Hi, "svDialogs" depends on svGUI but doesn't import functions it needs. This happens with packages which have not been updated for some time and thus may not conform to the requirements to import stuff even for dependencies. Try adding "svGUI" to "Depends:" as a temporary measure and contact

Re: [R-pkg-devel] Alignment of Function Arguments For PDF Manual and HTML

of the window. Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Dario Strbenac Sent: 01 March 2018 05:00 To: r-package-devel@r-project.org Subject: [R-pkg-devel] Alignment of Function Arguments For PDF Manual and HTML Good

Re: [R-pkg-devel] R package CRAN check error

You get a source package suitable for submission by running `R CMD check namepackage' or the equivalent devtools::build() Georgi -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Ilaria Amerise Sent: 16 February 2018 11:35 To:

Re: [R-pkg-devel] discovering if a function in a package is called under RStudio

Many thanks, I should have looked at rstudioapi, from rstudioapi::isAvailable(): > .Platform$GUI [1] "RStudio" Georgi From: jorism...@gmail.com [mailto:jorism...@gmail.com] On Behalf Of Joris Meys Sent: 09 February 2018 09:09 To: Georgi Boshnakov Cc: r-package-devel@r-project.or

[R-pkg-devel] discovering if a function in a package is called under RStudio

Hi, Is there a canonical way for a function to discover if it has been called in a session under RStudio? I looked the at the options() but none seems to be dedicated to this. Thanks, Georgi Boshnakov __ R-package-devel@r-project.org mailing list

Re: [R-pkg-devel] Depreciate Function

well go unnoticed and is likely focused trouble to your users. And real pain if your package is used in other packages. Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Rami Krispin [rami.kris...@gmail.com

Re: [R-pkg-devel] Strange Additional_repositories NOTE followed by package install error

s fine of course). Georgi Boshnakov -Original Message- From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On Behalf Of Hugh Parsonage Sent: 05 February 2018 11:29 To: r-package-devel@r-project.org Subject: [R-pkg-devel] Strange Additional_repositories NOTE followed by p

Re: [R-pkg-devel] Is it ever appropriate (or mandatory) to Suggests: R (>= version) ?

The advice at the link you cite ([1] https://stackoverflow.com/a/8638902/1664978) is not quite right: > I believe it is a requirement that if package A imports package B, and > package B lists package C in Depends: then package A must also list > package C in Depends: > A popular stackoverflow

Re: [R-pkg-devel] (no subject)

the vignette and inspecting the generated R file. I think that in recent versions of knitr there is an option to prevent generating the R file in the first place, so this may solve the problem. Georgi -- Dr Georgi Boshnakov tel: (+44) (0)161 306 3684 School of Mathematics fax

Re: [R-pkg-devel] Debian: example file is no longer read correctly

exhaustive checks. The check for nofiles > 0 was already suggested, another suggestion is after the signature below. Kind regards, Georgi Boshnakov The chunk: = if (ncol(data) == 2) { ... } if (ncol(data) =

Re: [R-pkg-devel] Fwd: R CMD check and strange ## Not run strings

don't argue whether it should be the one shown now or should be left entirely to the package author, although the current one seems reasonable to me. Georgi -Original Message- From: Hadley Wickham [mailto:h.wick...@gmail.com] Sent: 19 December 2017 19:22 To: Georgi Boshnakov Cc: Tomas

Re: [R-pkg-devel] Fwd: R CMD check and strange ## Not run strings

taken it from contains similar examples in other places, so a user will become aware of this. Merry Christmas, Georgi From: Tomas Hudik [mailto:xhu...@gmail.com] Sent: 19 December 2017 16:02 To: Georgi Boshnakov Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] Fwd: R CMD check

Re: [R-pkg-devel] Fwd: R CMD check and strange ## Not run strings

ent. Also, adding a note (in a comment before the example) as to way an example is not run can be of benefit to both the user and the package author. Even if it is obvious at the time of writing, it may not be so months or years later. Kind regards, Georgi Boshnakov -Original Message- F

Re: [R-pkg-devel] Macros in Rd files --- supplementary question.

build', see below for a sample console output on Windows from a package which contains Rd macros and vignettes. The messages you show seem to come from 'Rd2pdf'. Is it possible that you have some custom script that builds the manual, as well? Also some environment variable may be the culprit

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