Re: [R-pkg-devel] r-oldrel-linux- not in CRAN checks?

2024-02-07 Thread Vincent van Hees
then there is also limited value in me making the effort. I have now fixed the message formatting in that issue just in case Rfast maintainers want to have a look at it. Vincent Op di 6 feb. 2024 21:34 schreef Ivan Krylov : > В Tue, 6 Feb 2024 18:27:32 +0100 > Vincent van Hees пишет: > > >

[R-pkg-devel] r-oldrel-linux- not in CRAN checks?

2024-02-06 Thread Vincent van Hees
Hello, I noticed that there is no r-oldrel-linux-x86_64... on the CRAN package results page. Does this mean that CRAN checks no longer run on old Debian releases? The reason for asking this is that I am struggling to install Rfast on Ubuntu 18, which made me wonder whether CRAN/R community no

Re: [R-pkg-devel] How to create a macos-arm64 virtual machine/cloud environment to debug R package?

2023-12-06 Thread Vincent van Hees
issue > > TZ=NZ R CMD check --as-cran > > Apologies if this is just noise but whenever I've had issues with > datetimes and mac tests this is the first thing I check. > > Tim > > > > > On Wed, 6 Dec 2023, at 9:28 AM, Vincent van Hees wrote: > > Hello, >

Re: [R-pkg-devel] How to create a macos-arm64 virtual machine/cloud environment to debug R package?

2023-12-06 Thread Vincent van Hees
age-called-rcmdcheck-but-unclear-how-to-account-for-timezone/166876 ... I should have thought about that first. Vincent On Wed, 6 Dec 2023 at 10:28, Vincent van Hees wrote: > Hello, > > What is the recommended way to create a virtual machine or cloud based R > environment for debugging R p

[R-pkg-devel] How to create a macos-arm64 virtual machine/cloud environment to debug R package?

2023-12-06 Thread Vincent van Hees
Hello, What is the recommended way to create a virtual machine or cloud based R environment for debugging R package issues specific to OS macos-arm64? Details: CRAN results show macos-arm64 specific problems for my package: https://cran.r-project.org/web/checks/check_results_GGIR.html. I am able

Re: [R-pkg-devel] Issue of itemize in man file

2023-10-22 Thread Vincent van Hees
I ran into the same issue last week with .Rd files that were previously accepted on CRAN and concluded that the package checks are becoming more critical about this aspect of Rd syntax, which is good. To reproduce the note outside R-devel and by that identify which files in your package are

[R-pkg-devel] my experiences of maintaining an R package for 10 years

2023-08-08 Thread Vincent van Hees
Dear all, This is not a question. I just put a blog post online with a lengthy overview of how I have developed and maintained the R package GGIR as available on CRAN for the past 10 years: https://www.accelting.com/updates/10th-anniversary-of-ggir/ The package itself is probably not of interest

Re: [R-pkg-devel] Warning 'as.data.frame.POSIXct()' is deprecated

2023-07-06 Thread Vincent van Hees
:22, Dirk Eddelbuettel wrote: > > On 6 July 2023 at 08:14, Dirk Eddelbuettel wrote: > | > | On 6 July 2023 at 14:31, Vincent van Hees wrote: > | | Thanks, in that case the REPLEX for the issue may need to be: > | | > | | > remember = Sys.getenv("_R_CHECK_A

Re: [R-pkg-devel] Warning 'as.data.frame.POSIXct()' is deprecated

2023-07-06 Thread Vincent van Hees
> > #> 1 2023-07-06 > > lapply(dat, as.data.frame) > > #> Warning: Direct call of 'as.data.frame.Date()' is deprecated. Use > > #> 'as.data.frame.vector()' or 'as.data.frame()' instead > > #> [[1]] > > #> X[[i]] > > #> 1 2023-07-06 >

[R-pkg-devel] Warning 'as.data.frame.POSIXct()' is deprecated

2023-07-06 Thread Vincent van Hees
Dear all, I see the following warning in my package test results: ``` Warning Direct call of 'as.data.frame.POSIXct()' is deprecated. Use 'as.data.frame.vector()' or 'as.data.frame()' instead ``` The warning is not always there and I struggle to make it reproducible. I have encountered it in

[R-pkg-devel] Guidance on splitting up an R package?

2022-10-04 Thread Vincent van Hees
Dear all, I am looking for guidance (blog posts / books / people with expertise) on how to split up an R package that has grown a lot in complexity and size. To make it worthwhile, the split needs to ease the maintenance and ongoing development. Here are my quick reflections on it: 1. Where

[R-pkg-devel] Load data inside .Rd documentation file inside the item-field?

2022-05-03 Thread Vincent van Hees
Dear list, Is it possible in .Rd documentation to load and use data inside an item-field like we can integrate R data in text in R markdown files? Something along the lines of: \item{max}{ Numeric, default value = `R max`, controls the upper limit of the plot. } where `R max` resolves into the

Re: [R-pkg-devel] R feature suggestion: Duplicated function arguments check

2021-11-10 Thread Vincent van Hees
mple below is ambiguous and only the end-user knows whether B should be 2 or 4. Either way, I will just implement my own solution. Just wanted to report that I ran into this situation and maybe others too. Best, Vincent On Mon, 8 Nov 2021 at 17:24, Vincent van Hees wrote: > Thanks Duncan, I have

Re: [R-pkg-devel] R feature suggestion: Duplicated function arguments check

2021-11-08 Thread Vincent van Hees
st: > myfun(A = 1, B = 2, B = 4) [1] 3 # So, the second B is ignored. On Mon, 8 Nov 2021 at 17:03, Duncan Murdoch wrote: > On 08/11/2021 10:29 a.m., Vincent van Hees wrote: > > Not sure if this is the best place to post this message, as it is more > of a > > suggestio

[R-pkg-devel] R feature suggestion: Duplicated function arguments check

2021-11-08 Thread Vincent van Hees
Not sure if this is the best place to post this message, as it is more of a suggestion than a question. When an R function accepts more than a handful of arguments there is the risk that users accidentally provide arguments twice, e.g myfun(A=1, B=2, C=4, D=5, A=7), and if those two values are

Re: [R-pkg-devel] URL in RMarkdown file (libcurl error code 35)

2021-02-17 Thread Vincent van Hees
/1358170607314235392 Best, Vincent On Wed, 17 Feb 2021 at 16:32, Vincent van Hees wrote: > Hello, > My R package submission got rejected today because of the URL libcurl > error code 35 issue below (see heading Attempt 1). It seems I have a > subscription to these errors, because I have been gettin

[R-pkg-devel] URL in RMarkdown file (libcurl error code 35)

2021-02-17 Thread Vincent van Hees
Hello, My R package submission got rejected today because of the URL libcurl error code 35 issue below (see heading Attempt 1). It seems I have a subscription to these errors, because I have been getting them a lot through the years. Next, I edited the URL and submitted the package to R-devel on

Re: [R-pkg-devel] url checks not working for me

2020-08-26 Thread Vincent van Hees
wrote: > At the minimum you should look at the “moved to” URLs and change your > links to those (some are outright changes in URLs that were redirected and > some are http to https changes). > > Bryan > > > On Aug 26, 2020, at 8:22 AM, Vincent van Hees > wrote: > >

[R-pkg-devel] url checks not working for me

2020-08-26 Thread Vincent van Hees
Hello, URL errors in my DESCRIPTION file and package vignette are not picked up when I do R CMD check --as-cran or devtools::check(). I only know about these errors because CRAN has rejected my package submission and instructed me to fix the urls (example at end of this message). I am trying to

Re: [R-pkg-devel] My test passes in OSx on Travis, but not in OSx on CRAN

2019-09-13 Thread Vincent van Hees
ome > directory. This is not allowed. Probably by accident your test creates > "~/testcsv4.csv" (the same problem is present for other test files). > > Best > Tomas > > On 9/13/19 1:21 PM, Vincent van Hees wrote: > > Dear all, > > > > I have a

[R-pkg-devel] My test passes in OSx on Travis, but not in OSx on CRAN

2019-09-13 Thread Vincent van Hees
Dear all, I have a test in my R package that passes in OSx on Travis-CI, but it does not pass in OSx on CRAN. What does pass on both CRAN and Travis are the Linux tests. Also, on CRAN the Windows flavor passes. So, there seems to be an issue specific to the combination OSx and CRAN. The easiest

[R-pkg-devel] How to handle deprecated package dependency? 2 suggestions 1 question

2018-06-25 Thread Vincent van Hees
Dear all, One of my package dependencies was taken from CRAN a month ago, with the CRAN message: "...check problems were not corrected despite reminders" as displayed on the deprecated CRAN package page. I immediately got in touch with the deprecated package maintainer and learnt that he is