Dear Chris,
Maybe you could try debugging the error
> *** Java interpreter doesn't work properly.
based on the underlying javareconf script.
Scrolling through
> less `R RHOME`/bin/javareconf
we can see that the script exits from
> echo "Java interpreter : $JAVA"
> jires=`$JAVA -classpath
On 22 January 2019 at 15:18, Johannes Ranke wrote:
| Thanks for the offer. Personally, I am always glad to get some feedback from
| people using the Debian backports on CRAN, so thanks for that. On the other
| hand, I do not think that there is an error to be fixed. Of course it would
be
|
Hi Chris,
> I think the problem may be options setting where R/rJava will look for Java
so I tried:
> > options(java.home="/usr/lib/jvm/java-8-openjdk-amd64/")
This should not be necessary. I would recommend to start a fresh R session in
order to unset this.
> As far as I can see Debian is
Thanks Dirk and Enrico,
First clarification: I'm in this mess because I'm trying to run R 3.5.2 within
Debian stable (9/"sretch") using the stretch-cran35 repository. That uses and
provides r-api-35 but many of the packages depend upon r-api-3. As Johannes
said a day or so back, the way
On 22 January 2019 at 10:14, Chris Evans wrote:
| root@DebianAdvent:/home/chris/Downloads/gmp-6.1.2# apt-get install
openjdk-8-jdk-headless
| Reading package lists... Done
| Building dependency tree
| Reading state information... Done
| openjdk-8-jdk-headless is already the newest version
> "Chris" == Chris Evans writes:
Chris> As ever, I learn from this: I didn't know apt-file. Got it,
installed it, used it:
Chris> root@DebianAdvent:/home/chris/Downloads/gmp-6.1.2# apt-file search
jni.h
Chris> android-libnativehelper-dev:
On 22 January 2019 at 10:14, Chris Evans wrote:
| Anyone else got any ideas?
Java can be tricky and that is one of the reasons we have r-cran-rjava
prebuilt for you. It should resolve issues and work because other binary
packages depend on it.
Otherwise, as Johannes hinted, you need a JDK if
As ever, I learn from this: I didn't know apt-file. Got it, installed it, used
it:
root@DebianAdvent:/home/chris/Downloads/gmp-6.1.2# apt-file search jni.h
android-libnativehelper-dev: /usr/include/android/nativehelper/jni.h
android-platform-frameworks-native-headers:
Am Dienstag, 22. Januar 2019, 08:27:14 CET schrieb Chris Evans:
...
> error: jni.h: No such file or directory
> #include
> ^
> compilation terminated.
You get a complaint that jni.h is missing. So one strategy would be to look
for this file in the available packages:
sudo apt-file search
Wow, this has amplified my respect and gratitude for the R Debian repositories.
Doing all the install.packages() and following the clues about missing
dependencies has taken hours! However, I have almost all the packages I want
installed on this machine and Rstudio and the shiny server are
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