Re: [R-sig-Debian] Error gdata and gplots packages

2014-02-24 Thread Douglas Bates
It seems to me that those are warnings, not errors. They simply reflect the fact that the authors of the R packages gdata and gplots have not been as careful as they should be about updating their packages. On Mon, Feb 24, 2014 at 10:17 AM, Elodie Chapeaublanc elodie.chapeaubl...@curie.fr

Re: [R-sig-Debian] cran ubuntu repository and ubuntu 12.10

2012-11-15 Thread Douglas Bates
I suggest you try another CRAN mirror. I use cran.us.r-project.org and don't have any problems. As that mirror is the site of the Bioconductor project, they are very good about keeping the mirror up to date. On Thu, Nov 15, 2012 at 10:36 AM, Chris Sims s...@princeton.edu wrote: Since

Re: [R-sig-Debian] lme4 installation

2012-08-29 Thread Douglas Bates
On Wed, Aug 29, 2012 at 2:45 PM, Michael Rutter ma...@psu.edu wrote: On 08/29/2012 03:31 PM, Scott Raynaud wrote: Being rather inept at all things Linux, I paid a consultant to fix some things on my computer, Unforntately, good help is hard to find. Here's where I am: ... Loading

Re: [R-sig-Debian] Installing LaTeX class files not available in Debian packages

2012-05-08 Thread Douglas Bates
On Tue, May 8, 2012 at 11:15 AM, Dirk Eddelbuettel e...@debian.org wrote: Doug, On 8 May 2012 at 10:56, Douglas Bates wrote: | I apologize for abusing the list somewhat but there is some connection | to R.  Several of the example files in the knitr package for R use the | tufte-handout

Re: [R-sig-Debian] parallel BLAS for Ubuntu 11.10

2011-11-11 Thread Douglas Bates
Added back the cc: to the R-SIG-Debian list On Fri, Nov 11, 2011 at 11:13 AM, Paul Johnson pauljoh...@gmail.com wrote: Speaking of GotoBLAS, have you run into the problem of thread management conflicts with RMPI?  In order to use GotoBLAS, the submission script on our cluster has to explicitly

[R-sig-Debian] parallel BLAS for Ubuntu 11.10

2011-11-10 Thread Douglas Bates
Has anyone succeeded in getting a parallel BLAS, such as Goto's BLAS, installed on a machine running Ubuntu 11.10? I currently have the libatlas3gf-base package installed on a machine with an AMD Athlon X4 processor. I tried to install the libopenblas-base and libopenblas-dev packages but there

[R-sig-Debian] Difference in the BLAS_LIBS definition on Ubuntu packages

2011-02-07 Thread Douglas Bates
A while back I posted to this group that I was having difficulty compiling packages that used BLAS and Lapack on an Ubuntu 32-bit system. I looked a little further into the issue and discovered that the /usr/lib/R/etc/Makeconf files are different on the 32-bit and 64-bit Ubuntu packages

[R-sig-Debian] R CMD INSTALL cannot find libf77blas

2011-01-28 Thread Douglas Bates
I feel like Marlon Brando in On the Waterfront where he's told It's not your night, kid, except for me it has been the last two months trying to debug memory problems. Now I can't even install an old version of this package on a netbook running the Ubuntu 10.10 netbook remix because it can't

Re: [R-sig-Debian] Howto compile chemometrics package from source

2010-09-27 Thread Douglas Bates
On Mon, Sep 27, 2010 at 2:30 PM, Jose Brasil c2o.pro...@gmail.com wrote: Dear friends, I'm confused about how to install packages from source. I just updated R in Lenny from http://cran.fiocruz.br/bin/linux/debian/ I included in sources.list: deb http://cran.fiocruz.br/bin/linux/debian

Re: [R-sig-Debian] Help for sources.list

2010-06-05 Thread Douglas Bates
As both you and Dirk have made considerable contributions to the R project, although in different contexts, I will try to smooth out some of the wrinkles in the communication. The thing to realize is that the Debian packages for R on the Debian archives are updated only when a new release of

Re: [R-sig-Debian] [Rd] Compiling R with ATLAS

2010-05-14 Thread Douglas Bates
There is a Debian/Ubuntu specific list, R-SIG-Debian@R-project.org, which I am cc:'ing on this reply, that is a better location for this discussion. It appears that you may be going about things the hard way. There are Ubuntu packages for atlas and for R that can handle all of this for you.

Re: [R-sig-Debian] A newbee problem compiling R in ubuntu.

2010-02-02 Thread Douglas Bates
On Mon, Feb 1, 2010 at 7:50 PM, Ross Boylan r...@biostat.ucsf.edu wrote: On Mon, 2010-02-01 at 19:36 -0600, Dirk Eddelbuettel wrote: | If you type dpkg-buildpackage -rfakeroot  in the directory where all | that stuff got opened up (the one above the debian subdirectory), it For

[R-sig-Debian] [OT] LaTeX peculiarities in Ubuntu 9.10 beta

2009-10-19 Thread Douglas Bates
I am running the beta test version of Ubuntu 9.10, x86_64 on a machine and encountered some peculiarities in LaTeX called through R-devel CMD texi2pdf file.tex The tilde character in the input, which should produce a non-breaking space, is now being rendered as a tilde. Does anyone know where I

[R-sig-Debian] Adjusting Mime types for files with extensions .R or .Rout

2009-06-12 Thread Douglas Bates
I'm not sure if this is a Debian/Ubuntu question related to R or a Gmail question related to R so I thought I would start with this mailing list. I often wish to email R scripts and the result of a R CMD BATCH run of the script. I wish them to be enclosures of mime type text/plain so they are

Re: [R-sig-Debian] Are there Debian/Ubuntu packages of the betaversions of R-2.9.0

2009-04-05 Thread Douglas Bates
On Sun, Apr 5, 2009 at 8:18 AM, Dirk Eddelbuettel e...@debian.org wrote: On 5 April 2009 at 08:36, Michael Rutter wrote: | If we make the beta debs of R available for Ubuntu, I think they | should be in a separate repository, as not to be pushed to people | uncomfortable with beta software.  

[R-sig-Debian] Are there Debian/Ubuntu packages of the beta versions of R-2.9.0

2009-04-04 Thread Douglas Bates
I embarrassed to need to ask this but I haven't seen any announcements yet of Debian or Ubuntu builds of R-2.9.0 now that it has gone to beta status. Am I just not looking in the right place? ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org

Re: [R-sig-Debian] how to convert source code in windows package for linux (ubuntu)

2008-10-10 Thread Douglas Bates
On Fri, Oct 10, 2008 at 3:13 PM, Josh Harmsen [EMAIL PROTECTED] wrote: Hi All, I was wondering if anyone here as successfully converted a package for windows to one that will work in Linux? What are the necessary steps if you have the source code? If you have compiled code in the package I

Re: [R-sig-Debian] [ESS] Debian/Ubuntu packages of a recent version of ess?

2008-06-16 Thread Douglas Bates
On Mon, Jun 16, 2008 at 12:25 AM, Vincent Goulet [EMAIL PROTECTED] wrote: Le ven. 13 juin à 16:09, Douglas Bates a écrit : Is there a repository from which I can install a recent version of ess as a Debian/Ubuntu package for amd_64? On the Ubuntu list of packages the released version of ess

[R-sig-Debian] Debian/Ubuntu packages of a recent version of ess?

2008-06-13 Thread Douglas Bates
Is there a repository from which I can install a recent version of ess as a Debian/Ubuntu package for amd_64? On the Ubuntu list of packages the released version of ess for hardy is 5.3.0-1 which seems, well, ancient. I see that there is a 5.3.8 version from the SVN sources for intrepid but IIRC

Re: [R-sig-Debian] [R] need help for building R in Ubuntu 8.04

2008-05-29 Thread Douglas Bates
On Thu, May 29, 2008 at 5:10 PM, Tony Plate [EMAIL PROTECTED] wrote: [moving this to R-sig-debian] Dirk, thanks for this info. The r-wiki http://wiki.r-project.org/rwiki/doku.php?id=getting-started:installation:debian contained some slightly different suggestions, but I strongly suspect