Re: [R-sig-Debian] R version on upgrading Debian 10 / 11 -> Debian 12

2023-09-28 Thread Johannes Ranke
Hi, the repo on CRAN where that page comes from actually has R 4.3.1 for Debian 12 (bookworm). I just missed to update that bit of that page, sorry for the confusion caused. The updated text will be online in the course of the day. Cheers, Johannes Am Donnerstag, 28. September 2023, 08:06:11

Re: [R-sig-Debian] R 4.3.1 on Debian bullseye-cran40 repository

2023-06-21 Thread Johannes Ranke
Am Mittwoch, 21. Juni 2023, 15:04:07 CEST schrieb Johannes Ranke: > Am Mittwoch, 21. Juni 2023, 09:48:17 CEST schrieb Iago Giné Vázquez: > > Hello, > > > > Although R 4.3.1 has been released some days ago, and in > > http://cloud.r-project.org/bin/

Re: [R-sig-Debian] R 4.3.1 on Debian bullseye-cran40 repository

2023-06-21 Thread Johannes Ranke
Am Mittwoch, 21. Juni 2023, 09:48:17 CEST schrieb Iago Giné Vázquez: > Hello, > > Although R 4.3.1 has been released some days ago, and in > http://cloud.r-project.org/bin/linux/debian/ it is claimed that > > > Debian bullseye has been released with R 4.0.4. If you want to upgrade to R > 4.3.1

[R-sig-Debian] R Graphics engine again - Was: Accepted r-base 4.1.3.20220324-1 (source) into unstable

2022-03-29 Thread Johannes Ranke
20220324.orig.tar.gz 3eaa8ff662c0311280a086146a9d4593 97896 gnu-r optional r- base_4.1.3.20220324-1.debian.tar.xz 47a90075880240ea3deb707da2e9cb40 16715 gnu-r optional r- base_4.1.3.20220324-1_amd64.buildinfo ----- -- Johannes Ranke Wissenschaft

Re: [R-sig-Debian] signing key of repo expired -- tangential question

2021-11-16 Thread Johannes Ranke
but things happen in life, and the collective can be > inconvenienced. > > Best, > > JN > > On 2021-11-16 8:28 a.m., Johannes Ranke wrote: > > Hi all, > > > > sorry to all users of the CRAN Debian backports for the inconvenience > > caused by the expira

Re: [R-sig-Debian] signing key of repo expired

2021-11-16 Thread Johannes Ranke
.list.d# cat rbase-stable.list > | deb http://ftp.gwdg.de/pub/misc/cran/bin/linux/debian buster-cran40/ > | > | > | W: GPG-Fehler: http://ftp.gwdg.de/pub/misc/cran/bin/linux/debian > | buster-cran40/ InRelease: Die folgenden Signaturen waren ungültig: > | EXPKEYSIG FCAE2A0E115C3D8

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no --- slight update.

2021-08-31 Thread Johannes Ranke
> > I don't think so. I did "sudo find /usr -name "*curl*" -print". The > > results are attached in the file "curlSearch.txt". > > Good thought as far as I can tell. Unfortunately the attachment didn't get > through. Oh, I just overlooked the attachement, it did get through. The listing

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no --- slight update.

2021-08-31 Thread Johannes Ranke
Am Dienstag, 31. August 2021, 01:47:14 CEST schrieb Rolf Turner: > On Mon, 30 Aug 2021 08:00:34 +0200 ... > > But it seems you still have a curl/libcurl version in /usr/local that > > you should get rid of, as it gets in the way of configuring R. > > I don't think so. I did "sudo find /usr

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no --- slight update.

2021-08-30 Thread Johannes Ranke
o I tried to upgrade. The process seemed to be > endlessly complicated but I eventually got a new version such that > >gcc --version > > gives "(Ubuntu 11.1.0-1ubuntu1~20.04) 11.1.0". (11.1 not 11.2 ??? Oh, > well.) > > But then

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no

2021-08-29 Thread Johannes Ranke
... > > curl: /usr/local/lib/libcurl.so.4: no version information available so here we have evidence that indeed you have a locally compiled curl version on your system in addition to the Ubuntu one (which would not put anything into /usr/local/lib). So it seems that at some point you have

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no

2021-08-29 Thread Johannes Ranke
Am Sonntag, 29. August 2021, 11:01:43 CEST schrieb Rolf Turner: > On Sun, 29 Aug 2021 10:16:16 +0200 > > Johannes Ranke wrote: ... > > You can try > > > > $ sudo apt build-dep r-base > > > > to pull in all build dependencies specified by Dirks

Re: [R-sig-Debian] Configure error: checking if libcurl supports https... no

2021-08-29 Thread Johannes Ranke
Hi, for what it's worth, on a Debian bullseye system, configuring the R 4.1.0 tarball works fine: $ wget https://cran.r-project.org/src/base/R-4/R-4.1.0.tar.gz $ tar xf R-4.1.0.tar.gz $ cd R-4.1.0/ $ ./configure ... checking if libcurl supports https... yes ... with libcurl4 and

Re: [R-sig-Debian] R 4.1.0 and Graphics Packages

2021-08-15 Thread Johannes Ranke
Just a quick reminder, see below ... > We can rebuild all the affected packages. An 'apt update; apt upgrade' > would then pull them in. That is generally my preferred approach. > > Dirk Johannes ___ R-SIG-Debian mailing list

Re: [R-sig-Debian] R 4.1.0 and Graphics Packages

2021-05-25 Thread Johannes Ranke
Am Freitag, 21. Mai 2021, 19:03:59 CEST schrieb Dirk Eddelbuettel: > On 21 May 2021 at 10:56, Johannes Ranke wrote: > | Hi all, > | > | The NEWS for R 4.1.0 contain the note: > | > | - The graphics engine version, R_GE_version, has been bumped to 14 and so > | packages

[R-sig-Debian] R 4.1.0 and Graphics Packages

2021-05-21 Thread Johannes Ranke
Hi all, The NEWS for R 4.1.0 contain the note: - The graphics engine version, R_GE_version, has been bumped to 14 and so packages that provide graphics devices should be reinstalled And indeed, I just ran into this and got a Graphics API version mismatch error when using the tikzDevice

Re: [R-sig-Debian] Failing to install R 4.0.? on Raspian

2021-03-25 Thread Johannes Ranke
Am Donnerstag, 25. März 2021, 08:11:43 CET schrieb Chris Evans: > My reply to Dirk crossed with your incoming message Johannes. Thanks both. You're welcome! > More inline below. > ... > > > > Yes, at one point I did compile armhf arm64 packages for the CRAN repo on > > a > > raspberry that I

Re: [R-sig-Debian] Failing to install R 4.0.? on Raspian

2021-03-24 Thread Johannes Ranke
have "semigrated" to France, see: > |https://www.psyctc.org/pelerinage2016/semigrating-to-france/ > |https://www.psyctc.org/pelerinage2016/register-to-get-updates-from-pele > |rinage2016/| > | If you want an Emeeting, I am trying to keep them to Thursdays and my diary is at: > |https://www.psyctc.org/pelerinage2016/ceworkdiary/ > | > | Beware: French time, generally an hour ahead of UK. > | > | ___ > | R-SIG-Debian mailing list > | R-SIG-Debian@r-project.org > | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- Johannes Ranke Wissenschaftlicher Berater 07624 8099027 https://jrwb.de ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] Solution to apt-key depreciation

2021-03-18 Thread Johannes Ranke
gt; > [[alternative HTML version deleted]] > > > > > > R-SIG-Debian mailing list > > > > > > R-SIG-Debian@r-project.org > > > > > > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > > > > R-SIG-Debian mailing list > &

[R-sig-Debian] Fwd: Accepted mgcv 1.8-32-1 (source) into unstable

2020-08-20 Thread Johannes Ranke
Hi Dirk, hi all, -- Weitergeleitete Nachricht -- Betreff: Accepted mgcv 1.8-32-1 (source) into unstable Datum: Donnerstag, 20. August 2020, 18:06:49 CEST Von: Debian FTP Masters An: debian-devel-chan...@lists.debian.org Format: 1.8 Date: Thu, 20 Aug 2020 10:41:33 -0500

Re: [R-sig-Debian] R 4.0 for ARM processors

2020-07-16 Thread Johannes Ranke
Am Mittwoch, 15. Juli 2020, 22:12:08 CEST schrieb Dirk Eddelbuettel: > On 15 July 2020 at 19:44, Paul Teetor wrote: > | H. Perhaps I'm using the wrong terminology. My logic is: (1) I am > | running Ubuntu focal on the cluster. > I am with you so far. > > | (2) Ubuntu focal is built on Debian

Re: [R-sig-Debian] How to install libisl.so.19 on chromebook?

2020-07-14 Thread Johannes Ranke
Am Dienstag, 14. Juli 2020, 13:57:01 CEST schrieb Luigi Marongiu: > I don't know about the configuration. I installed R using the standard > protocol for Chromebook > http://blog.sellorm.com/2018/12/20/installing-r-and-rstudio-on-a-chromebook/ Hi Luigi, I would not call this a standard protocol.

Re: [R-sig-Debian] Update on docker Python:3 and adding R:4.x

2020-06-25 Thread Johannes Ranke
Am Donnerstag, 25. Juni 2020, 05:54:03 CEST schrieb Dirk Eddelbuettel: > >RUN apt update && apt install -y r-base > > instead. (I also removed the -t buster-cran40 as the 'highest version > should win'. That may or may not work. Adjust as needed.) Removing -t buster-cran40 only installs R

Re: [R-sig-Debian] Update on docker Python:3 and adding R:4.x

2020-06-25 Thread Johannes Ranke
Am Donnerstag, 25. Juni 2020, 04:52:37 CEST schrieb Dave Lange: > My dockerfile: > ... > RUN apt update \ > && apt-get install -y --no-install-recommends \ > ca-certificates \ > wget \ > && rm -rf /var/lib/apt/lists/* Any reason why you remove the contents of /var/lib/apt/lists? On my system,

Re: [R-sig-Debian] Docker build issue

2020-06-22 Thread Johannes Ranke
Am Montag, 22. Juni 2020, 20:06:18 CEST schrieb Dirk Eddelbuettel: > On 22 June 2020 at 19:37, Johannes Ranke wrote: > | sorry, I do not understand half of this, as I do not use docker myself. ... > > This is getting off topic here. In essence Dave just needs a patient Docker > tut

Re: [R-sig-Debian] Docker build issue

2020-06-22 Thread Johannes Ranke
Hi Dave and Dirk, sorry, I do not understand half of this, as I do not use docker myself. Buf if Dirk does not use Debian buster as the basis for his Rocker container, then you should probably not try to install the backport to buster. Shouldn't these docker containers be there to avoid the

Re: [R-sig-Debian] installation problem for R 4.0 on Debian buster

2020-06-05 Thread Johannes Ranke
Am Freitag, 5. Juni 2020, 20:04:48 CEST schrieb Dirk Eddelbuettel: > On 5 June 2020 at 08:52, Johannes Ranke wrote: > | Hi Mark, > | > | Am Freitag, 5. Juni 2020, 00:31:34 CEST schrieb Mark van der Loo: > | > Hi all, > | > > | > I just spun up a fresh Debian

Re: [R-sig-Debian] installation problem for R 4.0 on Debian buster

2020-06-05 Thread Johannes Ranke
Hey Dirk, Am Freitag, 5. Juni 2020, 20:07:22 CEST schrieb Dirk Eddelbuettel: > Johannes, > > Also, the page is an edit behind. The Debian transition for R 4.0.0 ended; > and the R package 4.0.0-3 is in testing as are all packages using r-api-4.0. yes, absolutely, thanks for the hint! The

Re: [R-sig-Debian] installation problem for R 4.0 on Debian buster

2020-06-05 Thread Johannes Ranke
Hi Mark, Am Freitag, 5. Juni 2020, 00:31:34 CEST schrieb Mark van der Loo: > Hi all, > > I just spun up a fresh Debian Buster instance, then I added: > > deb http://cloud.r-project.org/bin/linux/debian buster-cran40/ > > to /etc/apt/sources.list. I also ran the apt-key command as described

Re: [R-sig-Debian] HTML help files missing for some packages

2020-05-29 Thread Johannes Ranke
Hi Paul $ sudo apt-file search /usr/lib/R/library/base/html/00Index.html tells me that this file is in r-base-html. do you have that package installed? r-base recommends r-base-html, but it does not depend on it. Installing recommended packages is the default on Debian systems, in contrast

Re: [R-sig-Debian] Install R 4 on Chromebook (unmet dependencies)

2020-05-27 Thread Johannes Ranke
Hi, I assume you are running Debian stable on this chromebook (True?). What's the architecture you are using (like amd64 or arm64, you can see it in the output of uname -a). I have stopped providing binaries for arm architectures, as I am not using them. You could build R 4.0.0 packages from

[R-sig-Debian] Fwd: RKWard and R 4.0.0 - Important bug and workaround

2020-05-24 Thread Johannes Ranke
Dear all, as I am providing rkward backports for Debian testing and stable on CRAN, I am forwarding this notice by the main developer. Meanwhile, it has been communicated that R 4.0.1 will be released on June 6. Cheers, Johannes -- Weitergeleitete Nachricht -- Betreff:

Re: [R-sig-Debian] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04

2020-05-13 Thread Johannes Ranke
Am Mittwoch, 13. Mai 2020, 14:19:07 CEST schrieb Adrien FABRE: > I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few > days ago, and Ubuntu from 18.04 to 20.04 yesterday. > > Since then, R sometimes never terminates when executing certain commands: ... > install the

Re: [R-sig-Debian] R-4.0.0 and Texlive 2020 installed on EmmabuntusDE4 (Debian Bullseye)

2020-04-29 Thread Johannes Ranke
Hi Patrice, Am Mittwoch, 29. April 2020, 11:03:56 CEST schrieb Patrice Kiener: > Hi Johannes, > > > Thank you for your comments. I run >sudo apt install -t bullseye-cran40 r-base > > and have now the current R-4.0.0 in /usr/lib/R with links in the menus > and R-devel R-4.1.0 in

Re: [R-sig-Debian] R-4.0.0 and Texlive 2020 installed on EmmabuntusDE4 (Debian Bullseye)

2020-04-28 Thread Johannes Ranke
Dear Patrice, thanks for sharing your experience with Debian based distributions. It is amazing how many distros you tested! In your situation I would recommend apt pinning for installing texlive 2020 from Debian sid on Debian bullseye aka testing or related systems. Simply adding sid sources

Re: [R-sig-Debian] Timezone conversion on Ubuntu 20.04

2020-04-25 Thread Johannes Ranke
Am Samstag, 25. April 2020, 01:02:38 CEST schrieb Jeroen Ooms: > Hi all, > > I am testing R 4.0 and ran into an issue with timezones on Ubuntu > Focal: converting a timestamp to another timezone results in NA: > > as.POSIXct(as.POSIXlt(Sys.time(), tz = "CET"), tz = "EST") > > This only

[R-sig-Debian] R 4.0.0 for bullseye and buster

2020-04-25 Thread Johannes Ranke
Dear all, I set up new repositories on CRAN for R 4.0.0 and the recommended packages. As the transition will probably still take a while, I also created a repo for bullseye. If you would like to use R 4.0.0 from these repos, you first need to remove r-base-core which will remove all the Debian

Re: [R-sig-Debian] 3.6 on debian stretch

2019-08-01 Thread Johannes Ranke
Dear Larry, yes, because of various factors the r-cran-* packages from the stable and especially the oldstable distribution are often not compatible with the backported r-base packages provided on CRAN. At current, buster is not affected, but your case shows that using stretch gives this

Re: [R-sig-Debian] R 3.6.0 for Debian buster

2019-05-13 Thread Johannes Ranke
> Anyway, it is great to have the extra flag. I just prepared r-base 3.6.0-2 > and it contains the new flag in /etc/R/Makeconf thanks to your changes to > configure{,.ac} which I "backported" to 3.6.0-2. It also includes the > whitelist for the non-portable compiler flags noise. Great! I just

Re: [R-sig-Debian] R 3.6.0 for Debian buster

2019-05-10 Thread Johannes Ranke
Kurt, Am Donnerstag, 9. Mai 2019, 16:35:24 CEST schrieb Kurt Hornik: > >>>>> Johannes Ranke writes: > Johannes, > > It seems that one can avoid the gfortran problems with Fortran > BLAS/LAPACK implementations by compiling with > -fno-optimize-sibling-calls. .

Re: [R-sig-Debian] R 3.6.0 for Debian buster

2019-04-29 Thread Johannes Ranke
Am Montag, 29. April 2019, 15:03:54 CEST schrieb Kurt Hornik: > >>>>> Johannes Ranke writes: > > Am Montag, 29. April 2019, 13:44:03 CEST schrieb Kurt Hornik: > >> >>>>> Johannes Ranke writes: > >> Thanks. You may have seen that with curr

Re: [R-sig-Debian] R 3.6.0 for Debian buster

2019-04-29 Thread Johannes Ranke
Am Montag, 29. April 2019, 13:44:03 CEST schrieb Kurt Hornik: > >>>>> Johannes Ranke writes: > Thanks. You may have seen that with current gfortran in > testing/unstable, there are problems with the R BLAS/LAPACK API entries > using a Fortran interface (and hence in par

[R-sig-Debian] R 3.6.0 for Debian buster

2019-04-29 Thread Johannes Ranke
Dear all, Now that the upcoming Debian release "buster" is frozen, I have started supplying backports for it. Pending mirror synchronisations, R 3.6.0 is now available for Debian buster on i386 and amd64 architectures. Please refer to https://cran.r-project.org/bin/linux/debian/ for

Re: [R-sig-Debian] Most recent version R for IBM Power8 Ubuntu environment

2019-02-26 Thread Johannes Ranke
Hi all, Am Dienstag, 26. Februar 2019, 09:06:49 CET schrieb Dirk Eddelbuettel: > Bill, > > On 21 February 2019 at 15:14, Bill Glessner wrote: > | What is he most recent version of R known to run reliably in an > | environment of IBM HPC cluster Power8 systems, Ubuntu 16.04.1 operating > |

Re: [R-sig-Debian] Cross compile R for ARM target

2019-02-17 Thread Johannes Ranke
> > > OSMOS Group > 37, rue la perouse > 75116 PARIS > > Tél: +331 70 23 97 45 - Fax: +331 71 39 85 14 > www.osmos-group.com > ____ > De : R-SIG-Debian [r-sig-debian-boun...@r-project.org] de la part de > Johannes Ranke [jra...@

Re: [R-sig-Debian] Cross compile R for ARM target

2019-02-17 Thread Johannes Ranke
erouse > 75116 PARIS > > Tél: +331 70 23 97 45 - Fax: +331 71 39 85 14 > www.osmos-group.com > ___ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Grenza

Re: [R-sig-Debian] Update RKWard to> = 0.7.0

2019-01-29 Thread Johannes Ranke
gt; ___ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- Johannes Ranke Wissenschaftlicher Berater https://jrwb.de/contact ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] So nearly there, but can't install rJava

2019-01-22 Thread Johannes Ranke
t; >| Anyone else got any ideas? > > > > Install the full-blown jdk no just headless. > > > > In the sources for rJava I have as a build-depends > > > > openjdk-10-jdk > > > > which may of course be a virtual. At some point we had more than

Re: [R-sig-Debian] So nearly there, but can't install rJava

2019-01-22 Thread Johannes Ranke
Am Dienstag, 22. Januar 2019, 08:27:14 CET schrieb Chris Evans: ... > error: jni.h: No such file or directory > #include > ^ > compilation terminated. You get a complaint that jni.h is missing. So one strategy would be to look for this file in the available packages: sudo apt-file search

Re: [R-sig-Debian] r-api-3 with R 3.5.2. on Stretch: is there a workaround?

2019-01-21 Thread Johannes Ranke
affected packages > within R? On the very slow old laptop I'm using for this work that is > taking ages and I'm guessing that had I been able to install the debs the > installation would have been much faster. > > Is there a workaround or am I right that installing within R _is_ the

Re: [R-sig-Debian] Still hitting odd problems trying to install R 3.5.2 on Debian amd64 machine

2019-01-20 Thread Johannes Ranke
Hi Chris, Am Sonntag, 20. Januar 2019, 19:30:16 CET schrieb Chris Evans: ... > root@DebianAdvent:/etc/apt# apt-get install drmngr > Reading package lists... Done > Building dependency tree > Reading state information... Done > E: Unable to locate package drmngr That was just a typo. ... >

Re: [R-sig-Debian] This list elicits spam

2018-05-20 Thread Johannes Ranke
Hi, I get the same annoyance, of course with varying text when I post to this list. Copying in r-sig-debian-ow...@r-project.org for information. Johannes Am Sonntag, 20. Mai 2018, 10:07:17 CEST schrieb Robin Lovelace: > Unrelated to previous email: every time I send an email to this list I get

Re: [R-sig-Debian] R-SIG-Debian Digest, Vol 152, Issue 4

2018-05-13 Thread Johannes Ranke
Am Sonntag, 13. Mai 2018, 21:02:42 CEST schrieb Bill Harris: ... Do I understand correctly that I should be able to replace the last line of my sources.list (in my reply to Dirk) with deb http:///bin/linux/debian stretch-cran35/ If you do this, then update and upgrade, r-cran-* or

Re: [R-sig-Debian] R-SIG-Debian Digest, Vol 152, Issue 4

2018-05-13 Thread Johannes Ranke
there a place where an official summary of the state of the R system on > Stretch is maintained? > > I've tried to scan this list, but I may well have missed the answers to my > questions about Stretch. > > Thank you, > > Bill > > [[alternati

Re: [R-sig-Debian] R 3.5.0 binaries for Debian and Ubuntu

2018-04-29 Thread Johannes Ranke
Hi, > - For Debian, I started a similar 'minimal' R 3.5.0 repo here > https://github.com/eddelbuettel/drr35 > which allowed me eg to update the 'base' Rocker image for R 3.5.0 > https://github.com/rocker-org/rocker/blob/master/r-base/Dockerfile >

Re: [R-sig-Debian] Hash Sum mismatch @ uni-muenster mirror

2018-03-19 Thread Johannes Ranke
; r-cran-class 7.3-14-2~stretchcran.0 > r-cran-nnet 7.3-12-2~stretchcran.0 > r-cran-spatial 7.3-11-2~stretchcran.0 > > Regards, > Benjamin -- Johannes Ranke Wissenschaftlicher Berater https://jrwb.de/contact ___ R-SIG-Debian mailing

Re: [R-sig-Debian] Debian r-base package

2018-01-04 Thread Johannes Ranke
Sorry, I was dreaming > repositories (like jessie-backports) should go to the debian-science list. to the debian-backports list. Johannes ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] Debian r-base package

2018-01-04 Thread Johannes Ranke
ease keep follow-up on the list rather > than my inbox. > > Best, Dirk > > | Thank you very much > | Best regards > | Morgan -- Johannes Ranke Wissenschaftlicher Berater https://jrwb.de/contact ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] Debian backport on Stretch?

2017-11-20 Thread Johannes Ranke
Am Sonntag, 19. November 2017, 09:06:04 CET schrieb Dirk Eddelbuettel: > On 19 November 2017 at 19:02, Charles Plessy wrote: > | Le Sat, Nov 18, 2017 at 03:26:53PM -0800, Bill Harris a écrit : > | > Incidentally, you can see a bit more complete description at > | >

Re: [R-sig-Debian] Problem when installing lme4 under Debian stretch

2017-10-22 Thread Johannes Ranke
> the error message you posted). Surely more than five minutes ago my raspi > started to compile the file fastLm.cpp ... > > I will let you know if I succeed. It only worked after activating swap. However, this is not recommended when using an SD card as file system... So maybe it would be

Re: [R-sig-Debian] Problem when installing lme4 under Debian stretch

2017-10-21 Thread Johannes Ranke
| > http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org > | > | [[alternative HTML version deleted]] > | > | ___ > | R-SIG-Debian mailing list > | R-SIG-Debian@r-project.org > | https://stat.ethz.ch/mailma

[R-sig-Debian] Binary packages or R 3.4.2 for armhf and arm64 (Debian stretch)

2017-10-10 Thread Johannes Ranke
Hi, I would like to announce the immediate avaiability of armhf and arm64 binaries of R 3.4.2 for Debian stretch on CRAN. I plan to skip the armel binaries in the future, so in case you should use this architecture and rely on the CRAN Debian backports, please let me know. Cheers, Johannes

[R-sig-Debian] R 3.4.2 for Debian on CRAN

2017-10-03 Thread Johannes Ranke
Dear all, The backports of R 3.4.2 (providing r-api-3.4) to Debian stretch and Debian jessie have just hit CRAN. Should you still have R packages (e.g. r-cran-*) from regular Debian jessie/stretch on your system they would be removed if you install such a backport. For some more information,

Re: [R-sig-Debian] Please be careful with R 3.4.2 upgrades via CRAN, launchpad, ...

2017-09-29 Thread Johannes Ranke
Small correction to my previous post: > As of now (this was obviously going on today), all > reverse dependencies at level 1 (including the recommended packages) of > r-api-* have been adapted to depend on r-api-3.4 in unstable. rpart is not through yet, so r-recommended is AFAICS still not

Re: [R-sig-Debian] Please be careful with R 3.4.2 upgrades via CRAN, launchpad, ...

2017-09-29 Thread Johannes Ranke
Am Freitag, 29. September 2017, 22:30:08 CEST schrieb Dirk Eddelbuettel: > On 30 September 2017 at 04:21, Johannes Ranke wrote: > | I noticed that rkward, littler, rpy and rpy2 do not depend on r-api-* at > | all, so they do not get picked up by the transition. >

Re: [R-sig-Debian] Please be careful with R 3.4.2 upgrades via CRAN, launchpad, ...

2017-09-29 Thread Johannes Ranke
sitory -y ppa:edd/misc > | > > | > We may propagate these for to the usual 'rrutter' and then CRAN repos > | > too, > | > and will take it from there to figure out how to get r-api-3.4. > | > > | > I'm sorry for the disruption. My hand was a little forced but I should &

Re: [R-sig-Debian] rkward_0.6.5-1~stretchcran.0_amd64.deb missing

2017-09-26 Thread Johannes Ranke
tchcran.0_amd64.deb > rkward-data_0.6.5-1~stretchcran.0_all.deb > > By default, apt-get installed the Debian repository version (rkward > 0.6.5-1+b1 0.6.5-1+b1). > > Thanks for your contributions to the R-Debian project! > > Regards. Griera. > > On Mon, 25 Sep 2017 11:41:5

Re: [R-sig-Debian] rkward_0.6.5-1~stretchcran.0_amd64.deb missing

2017-09-25 Thread Johannes Ranke
for the i386 architecture dated September 20, but I do > not see the version for the amd64 architecture. > > Thank you very much for your help. > > Best regards. Griera. > > > On Wed, 20 Sep 2017 17:16:35 +0200 > > Johannes Ranke <johannes.ra...@jrwb.de&g

Re: [R-sig-Debian] rkward_0.6.5-1~stretchcran.0_amd64.deb missing

2017-09-20 Thread Johannes Ranke
> ___ > R-SIG-Debian mailing list > R-SIG-Debian@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- Johannes Ranke Wissenschaftlicher Berater https://jrwb.de/contact ___ R-SIG-D

[R-sig-Debian] R 3.4.0 for Debian stable and testing

2017-05-14 Thread Johannes Ranke
Dear all, With this email I would like to announce the availability of R 3.4.0 for jessie and stretch on CRAN. Please excuse the delay, caused by some uncertainty about how to deal properly with the incompatibility of R 3.4.0 with packages compiled with earlier versions that use calls to .C

Re: [R-sig-Debian] R installation problems on Linux Mint 18.1 via jessie-cran3

2017-04-27 Thread Johannes Ranke
Am Donnerstag, 27. April 2017, 15:05:32 schrieb J C Nash: > Is there a reason for jessie-cran3 rather than xenial? For Linux Mint 18 > (admittedly not 18.1) I have > > deb https://cloud.r-project.org/bin/linux/ubuntu xenial/ > > as one of the apt entries. > > JN Seconded. You should not expect

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-27 Thread Johannes Ranke
> | I am surprised that I did not see a related bug report in the Debian BTS > | yet, did I overlook something? I only looked for r-base. > > They may not know yet. I should write to debian-devel. I have just submitted a bug report so the further discussion gets archived in the right place:

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-27 Thread Johannes Ranke
Am Donnerstag, 27. April 2017, 06:32:13 schrieb Dirk Eddelbuettel: > On 27 April 2017 at 12:01, Johannes Ranke wrote: > | > so it seems to me this must affect all packages in Debian sid that were > | > built before the release of R 3.4.0! > | > | or rather before 14 April

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-27 Thread Johannes Ranke
> so it seems to me this must affect all packages in Debian sid that were > built before the release of R 3.4.0! or rather before 14 April 2017, which is when R from revision r72510 was uploaded to sid as pre-release candidate. Johannes ___

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-27 Thread Johannes Ranke
Am Dienstag, 25. April 2017, 11:21:31 schrieb Dirk Eddelbuettel: > On 25 April 2017 at 16:11, Johannes Ranke wrote: > | This looks similar to what I got this morning when I tested my > | (unreleased) > | backport of R 3.4.0 to Debian jessie. My test was > | > | library(MAS

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-27 Thread Johannes Ranke
> > > and there was an object that was not found. I am on a train on the way to > > a > > meeting right now, so I can not look into it at the moment. Maybe a side > > effect of the new registration requirements for compiled objects? > > Right, you need to run > > > u

Re: [R-sig-Debian] R-3.4.0 and recommended packages

2017-04-25 Thread Johannes Ranke
Am Dienstag, 25. April 2017, 08:50:34 schrieb Dirk Eddelbuettel: > On 25 April 2017 at 14:58, Göran Broström wrote: > | hello, > | > | I just installed R-3.4.0 from scratch: > | > | $ sudo apt install r-base > | > | but when I try > | > | > library(survival, lib.loc = "/usr/lib/R/library") >

Re: [R-sig-Debian] proplems installing R 2.5 on Ubuntu 14.04

2016-11-08 Thread Johannes Ranke
Am Dienstag, 8. November 2016, 08:28:35 schrieb Dirk Eddelbuettel: > On 8 November 2016 at 14:39, Lentes, Bernd wrote: > | i'd like to install R 2.5 on an Ubuntu 14.04. > | I have a special software requiring this old version. > | > | While ./configure, i get the following error: > | > |

Re: [R-sig-Debian] [FORGED] Re: Problem installing rgdal on a laptop running Ubuntu 16.04.1

2016-10-05 Thread Johannes Ranke
> > | Thanks. OK, I have now done > > | > > | sudo apt-get install r-cran-rgdal > > | > > | successfully. > > > > Very good. > > > > Now do > > > >IP <- installed.packages() > > > > and convince yourself that you have rgdal. You could even do > > > >library(rgdal) > > | > > |

Re: [R-sig-Debian] Please update GPG signature to long format.

2016-09-04 Thread Johannes Ranke
Hello Charles, thanks for the hint - I changed the instructions for the Debian section to use the key fingerprint. The change should propagate to CRAN https://cran.r-project.org/bin/linux/debian and its mirrors soon. Best regards, Johannes Am Sonntag, 4. September 2016, 10:03:16 schrieb

Re: [R-sig-Debian] Outdated r-base-core when installing on Ubuntu 14.04

2016-03-22 Thread Johannes Ranke
to say whether this worked either way. Thanks for the help, Matt On Mon, Mar 21, 2016 at 1:48 PM, Johannes Ranke <jranke@uni- bremen.de[1]> wrote: -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen [1] mailto:jra...@uni-bremen.de [[alternativ

Re: [R-sig-Debian] Outdated r-base-core when installing on Ubuntu 14.04

2016-03-21 Thread Johannes Ranke
Am Montag, 21. März 2016, 13:31:44 schrieb Dirk Eddelbuettel: > On 21 March 2016 at 13:18, Matthew Simpson wrote: > | It may be significant that my chromebook has an ARM processor. I don't > | know > | about the details of how this works, but perhaps some pieces of the R > | install haven't been

Re: [R-sig-Debian] Default R Font Changed After Upgrade to Debian 8

2016-01-02 Thread Johannes Ranke
Python 3 Cairo bindings for the > GObject library > > I recently noticed it also affects other software, like Firefox internet > browser. > > -- > Dario Strbenac > PhD Student > University of Sydney > Camperdown NSW 2050 &

Re: [R-sig-Debian] Unable to install R 3.2 on debian jessie

2015-09-19 Thread Johannes Ranke
Hi, Am Freitag, 18. September 2015, 15:25:10 schrieb George N. White III: > On Fri, Sep 18, 2015 at 8:35 AM Francois-Xavier Jollois < > > francois-xavier.joll...@parisdescartes.fr> wrote: > > Hi everybody > > > > I try to update R 3.1.1 to R 3.2.2 on a Debian Jessie (8.2) server. I > > try to

Re: [R-sig-Debian] Problem installing R on Debian 6

2015-09-16 Thread Johannes Ranke
> 404 Not Found > Err http://cran.at.r-project.org/bin/linux/debian/ squeeze-cran3/ > r-cran-class 7.3-12-1~squeezecran.3.2.1 > > [[alternative HTML version deleted]] > > __

Re: [R-sig-Debian] Server certificate verification failed

2015-08-18 Thread Johannes Ranke
Hi, Am Dienstag, 18. August 2015, 10:54:55 schrieb Irucka Embry: Hi all, I have the following in my apt sources.list file: deb https://... is there any reason you want to use https rather than http? server certificate verification failed. CAfile: /etc/ssl/certs/ca-certificates.crt

Re: [R-sig-Debian] Problems installing packages with R 3.2.0 on Linux Mint 17.1

2015-05-08 Thread Johannes Ranke
of all required components and deinstalling components that may interfere. Best regards, Stefan Am 07.05.2015 um 13:32 schrieb Dirk Eddelbuettel: On 7 May 2015 at 13:17, Johannes Ranke wrote: | I have no idea where the problem is, but I feel this strong urge to | mention

Re: [R-sig-Debian] Problems installing packages with R 3.2.0 on Linux Mint 17.1

2015-05-07 Thread Johannes Ranke
[[alternative HTML version deleted]] ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen

Re: [R-sig-Debian] Dependency problem with python-rpy2 package

2015-04-21 Thread Johannes Ranke
___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch

Re: [R-sig-Debian] running unit tests on the stringr package

2015-04-20 Thread Johannes Ranke
-2all Make it easier to work with strings ii r-cran-testthat0.9.1-1amd64 GNU R testsuite regards raju -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG-Debian mailing list R-SIG-Debian@r

Re: [R-sig-Debian] Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)

2015-04-02 Thread Johannes Ranke
. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8

Re: [R-sig-Debian] Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)

2015-03-31 Thread Johannes Ranke
-- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)

2015-03-30 Thread Johannes Ranke
/2010-May/001146.html ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG

Re: [R-sig-Debian] Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)

2015-03-30 Thread Johannes Ranke
://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen

Re: [R-sig-Debian] Suggestions to improve the info page of /bin/linux/debian

2015-03-03 Thread Johannes Ranke
. Le 02/03/2015 04:09, Johannes Ranke a écrit : Hi Mathieu, thanks for your input. It reminds me how I got involved in the Debian backports, as I thought the Debian README on CRAN needed an update... At the moment I do not have the time to reorganize the README, so if you would like

Re: [R-sig-Debian] Unable to install R 3.1.2 on Debian:Testing

2015-01-24 Thread Johannes Ranke
otherwise I will only have time in the weekend to do something (amend the README or set up a new repo for jessie) on the weekend. The repository for jessie is in the works - but don't expect it to be up before next weekend. Johannes ___

Re: [R-sig-Debian] Unable to install R 3.1.2 on Debian:Testing

2015-01-18 Thread Johannes Ranke
Dear Carl, the CRAN repository does not support Debian testing. I did think of adding support for jessie, as it is frozen now, but did not get around to do it yet. I believe you would have no problem when using Debian stable. Am Freitag, 16. Januar 2015, 21:44:25 schrieb Carl Boettiger: Dear

Re: [R-sig-Debian] BLAS/LAPACK routine 'DLASCL' gave error code -4 in liblapack3 Version 3.5.0

2014-12-16 Thread Johannes Ranke
Am Dienstag, 16. Dezember 2014, 08:39:34 schrieb Dirk Eddelbuettel: On 16 December 2014 at 14:45, Johannes Ranke wrote: | this list serves as a forum for discussions about R backports present on | CRAN, The mandate, as I recall, is a little broader: usage of R on Debian-based systems

Re: [R-sig-Debian] Update R on a new Linux Mint Maya 13 + rJava and XLConnect

2014-08-01 Thread Johannes Ranke
/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] requet

2014-07-19 Thread Johannes Ranke
Dear Kabirou Toikourou Please have a look at https://stat.ethz.ch/mailman/listinfo/r-sig-debian Kind regards, Johannes Ranke ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian

Re: [R-sig-Debian] debian testing CRAN repositories

2014-04-23 Thread Johannes Ranke
version deleted]] ___ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen ___ R-SIG-Debian

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