Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-10-02 Thread Johannes Ranke
Dear Chris, I am just keeping some parts of the thread below that I have not answered yet: All that begs the question how I got myself here. I think it was really a bug in the README on CRAN. I wrote that you can run a regular update of R packages using update.packages() which is not

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-22 Thread Chris Evans
Huge thanks to Johannes (sorry, Johannes, I think I implied that Dirk was doing all the hard work in rolling things in my earlier reply, the you is plural!) What I've done: A) removed r-cran-rgl and r-cran-xml using synaptic as root B) re-entered new R session as user chris, confirmed that the

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-22 Thread jranke
Zitat von Chris Evans chrish...@psyctc.org: Huge thanks to Johannes (sorry, Johannes, I think I implied that Dirk was doing all the hard work in rolling things in my earlier reply, the you is plural!) Never mind - you are absolutely right that Dirk is doing the heavy lifting, i.e.

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-21 Thread Dirk Eddelbuettel
Hi Chris, Thanks for patient follow-up even after I (as Johannes noted) evidently overlooked key parts of your first email. On 21 September 2011 at 07:49, Chris Evans wrote: | I ran synaptic from the Debian application menu which defaults to root | after askling for the root password the first

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-20 Thread Dirk Eddelbuettel
Welcome! On 20 September 2011 at 21:20, Chris Evans wrote: | I am moving from windoze on a Dell laptop to Debian but I seem to have | hit a snag for R. I managed to find the information to point an | /etc/apt/sources.list entry at my local CRAN repository and have | installed R 2.13.1 for

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-20 Thread Dirk Eddelbuettel
Also, as an aside, R should not have tried to write to /usr/lib/R/site-library. Via the file /etc/R/Renviron, we define the library path. You should see this in R: R .libPaths() [1] /usr/local/lib/R/site-library /usr/lib/R/site-library /usr/lib/R/library R and

Re: [R-sig-Debian] update.packages() as ordinary user, /usr/lib/R/site-library is not writable

2011-09-20 Thread jranke
Dear Chris, Dirk, dear list, let me add some thoughts here: Zitat von Dirk Eddelbuettel e...@debian.org: Welcome! On 20 September 2011 at 21:20, Chris Evans wrote: | I am moving from windoze on a Dell laptop to Debian but I seem to have | hit a snag for R. I managed to find the information