But those paths should not be used unconditionally (as you have). They
are not right for most x86_64 Linux, Solaris, ... and they might not
even be right on Mac OS X (depending on the X installation).
And PKG_CPPFLAGS was correct: that means flags for cpp, the C
pre-processor, not for C++
On 29/11/2012 17:37, Federico Calboli wrote:
On 29 Nov 2012, at 17:29, Jochen jochen.laubr...@gmail.com wrote:
Just a guess, but maybe XCode and its command line tools need to be installed?
I don't know for third parties, but I do have the latest XCode + command line
tools installed (and I
On 16/11/2012 12:40, Duncan Murdoch wrote:
On 12-11-15 11:57 PM, Paul Puglia wrote:
As anybody successfully downloaded the RSwitch gui at r.research.att.com
recently? I've tried to download both the .dmg and source files for the
last week, and I all I get is a Not Found message. Does
On 14/11/2012 20:26, Richard Friedman wrote:
Dear R-Sig-mac,
I have both the development version of R 2.16
and R2.15.2 on my Mac (OS 10.7.5). I only have one
GUI (for R2.16). I can start R windows for the 2
versions from the command lines. I used to be able to switch with Rswitch
but i
Marc,
Start with 'which R', or run /usr/bin/R explicitly. That should be a
symlink to
/Library/Frameworks/R.framework/Resources/bin/R
and that should be a symlink, If it is not like
lrwxr-xr-x 1 root admin 3 28 Oct 08:03
/Library/Frameworks/R.framework/Resources/bin/R@ - R64
or is
On 08/11/12 12:24, Andrew Yee wrote:
Hi, I'm new to Mac and when i installed the R.app, I noticed that it
put the 32 bit version of R onto the Launchpad instead of the 64 bit
version. Is this by design?
The R installer put both R,app and R64.app there for me. What exactly
did you do (you
On 06/11/2012 17:30, David Winsemius wrote:
On Nov 6, 2012, at 6:05 AM, Ken Knoblauch wrote:
Hi,
just noticed this in R version 2.15.2 Patched (2012-11-04 r61084),
that dragging a file onto the R icon when starting a session is not
changing to the directory of the file.
sessionInfo()
R
On 27/10/2012 17:25, Prof Brian Ripley wrote:
On 27/10/2012 17:10, Roy Mendelssohn wrote:
Hi:
I see that R 2.15.2 is now available for the Mac. In some of the
other R mail-lists people have mentioned having to reinstall packages
when
they upgraded to 2.15.2. Is this likely to be the case
On Wed, 24 Oct 2012, ricardo.julio.rodriguez.fernan...@sergas.es wrote:
Hi!
I'm happy using RMySQL to access a number of MySQL databases and RJDBC to
PostgreSQL ones here, but now I do need to integrate data from SQL Server
10.00.1600.
To the best of my knowledge and after googling for a
This is about lattice not using rep() correctly. There is no '2.16' and
never will be (see the posting guide).
From the NEWS for R-devel:
\item The undocumented use \code{rep(NULL, length.out = n)} for
\code{n 0} (which returns \code{NULL}) now gives a warning.
Deepayan is aware
On 12/10/2012 17:50, Torben Griebe wrote:
Hi there,
I just wanted to install gfortran via homebrew on mac os x mountain
lion. It uses the package gcc-42-5666.3-darwin11.pkg for installation.
Unfortunately I recognized that this package is not available anymore.
But the google cache told me that
On 06/10/2012 22:12, Jean Jang wrote:
Apologies, I forgot to include the message from the Terminal:
jeans-macbook-104:~ jean$ R
R version 2.13.1 (2011-07-08)
Please try installing a current version of R from CRAN: that is several
versions old and 2.15.1 is current (and 2.15.2 imminent).
On 29/09/2012 11:11, R. Michael Weylandt wrote:
On Sat, Sep 29, 2012 at 10:58 AM,
ricardo.julio.rodriguez.fernan...@sergas.es wrote:
Please, allow me to hijack this thread to put in another, for me, related question I'm
trying to work out on the list. To the best of my understanding and by
On 03/09/2012 01:11, Kasper Daniel Hansen wrote:
On Sun, Sep 2, 2012 at 3:54 PM, Prof Brian Ripley rip...@stats.ox.ac.uk wrote:
Do you need R.app? If not, I would recommend using ActiveTcl Tcl/Tk by e.g.
./configure ...
--with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh
Do you need R.app? If not, I would recommend using ActiveTcl Tcl/Tk by e.g.
./configure ...
--with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh
--with-tk-config=/Library/Frameworks/Tk.framework/tkConfig.sh
I've been using it for some time, and it has much nicer ttk widgets.
it would also work from the R session. This
circumvents the system call used to remove the session temporary
directory at the end of the session.
On 13/08/2012 13:14, Prof Brian Ripley wrote:
On Mon, 13 Aug 2012, Cule, Erika wrote:
(Reposted in plain text, with apologies)
I am having
On Mon, 13 Aug 2012, Cule, Erika wrote:
(Reposted in plain text, with apologies)
I am having the problem described in this post:
https://stat.ethz.ch/pipermail/r-sig-mac/2011-November/008848.html
In summary, running Valgrind with R hangs.
As in the linked case above, if a file test.R
On 19/07/2012 17:14, Hans-Jörg Bibiko wrote:
Hi,
[Since I have not a Windows machine at hand - I cannot say if it's a general R
issue.]
It's nothing to do with Windows, and everything to do with Apple's
contempt for standards conformance (which these days vies with Microsoft's).
I'm
On 16/07/2012 17:17, Davor Cubranic wrote:
You didn't have to go through the command line. In the R GUI's
package installer, if you switched package repository to CRAN
(sources), you would have found XLConnect there too.
You don't mention the version of OS X you're running, but for me with
Lion
On 23/06/2012 07:28, David Winsemius wrote:
On Jun 23, 2012, at 12:50 AM, Prof Brian Ripley wrote:
Other messages say this is a temporary snafu on the Mac builder, which
will be resolved once it percolates through CRAN: the master is OK
already.
Then I must be confused. I thought
I have hitherto used a Leopard system to build Mac binary packages for
distribution, but that system has died and we only have Lion systems
left (and the replacement hardware only runs Lion). I'm only concerned
with building i386/x86_64 packages.
We saw problems with packages built on Snow
On 16/03/2012 23:21, Simon Urbanek wrote:
On Mar 16, 2012, at 8:55 AM, Prof Brian Ripley wrote:
On 16/03/2012 12:31, Ken knoblauch wrote:
Federico Calbolif.calboliat imperial.ac.uk writes:
Apologies, I forgot to say, I have R 2.14.2, latest 64-bit GUI
from http://r.research.att.com
On 06/03/2012 01:24, Simon Urbanek wrote:
Dan,
On Mar 5, 2012, at 7:09 PM, Dan Tenenbaum wrote:
Hello,
Are there plans to modify install.packages() on Mac so that if
type=source, the package is installed for all installed
sub-architectures?
This works for Windows.
Currently,
Sorry, it appears that --merge-multiarch never got released except for
Windows. We can certainly finish that off.
On 06/03/2012 06:31, Dan Tenenbaum wrote:
On Mon, Mar 5, 2012 at 10:22 PM, Prof Brian Ripley
rip...@stats.ox.ac.uk wrote:
On 06/03/2012 01:24, Simon Urbanek wrote:
Dan
On 27/02/2012 15:50, Jeffrey Ryan wrote:
Not really a mac question at all.
It isn't an error message either, it is a warning to alert you to the
fact that two objects are now called the same thing and you may not be
seeing the one you originally expected (now that the latter package is
If you have multiple versions of R installed it is really convenient
that they contain the appropriate manuals. I have an archive back to
2.0.0 (and a few before) that I consult surprisingly often.
Our dept builds for Linux have always done 'make install install-pdf',
and I think the
Yes, it was added on Windows at user request (including the ability to
install the tests directory from sources). But as the Windows
installers have much finer-grained granularity controlling what should
be installed, people worried about space could skip it (and AFAIR it is
not installed by
On 25/01/2012 01:22, Steve Lianoglou wrote:
Hi Peter,
On Tue, Jan 24, 2012 at 8:06 PM, Peter Carrpc...@broadinstitute.org wrote:
I, too, would like to run multiple versions of R, via command line, on Mac
OS X. I have looked in vain for a clear explanation of why there can be one
and only one
On 25/01/2012 12:22, Emilio Molinari wrote:
Hi,
after googling around I surrender and post to this list.
Can you please follow the posting guide and tell us your sessionInfo()
(and are you using R.app or R, the command-line version?).
That your locale is not recognized by X11 may be
] kohonen_2.0.9 MASS_7.3-16 class_7.3-3
and, I am Running R in command line.
thank you.
emilio
On 25 Jan , 2012, at 12:32, Prof Brian Ripley wrote:
On 25/01/2012 12:22, Emilio Molinari wrote:
Hi,
after googling around I surrender and post to this list.
Can you please follow the posting
What precise OS and which architecture is this (see the posting guide)?
AFAIK LogicReg will install on x86_64 on a Mac (nowadays the default for
most people) but not the 32-bit architectures.
It predefines some very large arrays: try reducing LGCn1MAX (twice) in
slogic.f . It then works for
On 21/12/2011 19:49, Sang Chul Choi wrote:
First, I apologize for sending this duplicate message to r-sig-gui. I thought
that was the mailing list I should send questions about Mac GUI. I found that
this r-sig-mac mailing list was the right place to ask the following question.
Thank you.
On 24/11/2011 16:17, christiaan pauw wrote:
Hi Everybody
I have updated to R 2.14 today from version 2.11 by installing the binary
from http://cran.r-project.org/bin/macosx/.
As the posting guide points out, there are no such versions of R. Have
you read it?
Is there an easy way to make
On Fri, 25 Nov 2011, Simon Urbanek wrote:
On Nov 25, 2011, at 2:52 AM, christiaan pauw wrote:
Hi Everybody
Im on Mac OS X 10.6.6
$ sw_vers
ProductName: Mac OS X
ProductVersion: 10.6.6
BuildVersion: 10J3210
I am trying to install the latest version of JavaGD from source using the
GUI
Did you have a question? Your posting is two unconnected fragments.
How to install source packages is described in the 'R Installation and
Administration Manual'.
You didn't tell us where you ran this, but very likely you need
~/Desktop/Design_2.3-0.tar.gz.
But why not open a terminal and
See the list archives. Are you doing this in R.app, and have you
updated R 2.14.0 recently?
On Mon, 14 Nov 2011, Michael Kubovy wrote:
After installing the Hmisc package in terminal:
[mks-Mac-Pro:~/Downloads/14-11-11] mk% R CMD INSTALL Hmisc_3.9-0.tar
.Rprofile: Setting US repository
Loading
Please select a real CRAN mirror, not a broken one.
On Wed, 16 Nov 2011, Christopher Giguere wrote:
Hello everyone,
I am working on a Mac OS X 10.6.8 (10K549). I need to install the package *
fracdiff*. When I first ran into an issue I upgraded to R version 2.14 and
tried to install again.
On Wed, 2 Nov 2011, Denis Chabot wrote:
Hi,
is there a reason that the quartz device does not like the ~ in
file names, whereas most functions handling files (including pdf() )
have no problem with it?
Yes.
[Hint: no one contributed a patch for this wishlist item. The authors
of
This is something you need to take up with the geepack maintainer (who
is also the doBy maintainer). I find his misuse of Depends
ridiculous: we have Suggests and Enhances for such loose dependencies.
You can easily get snow, as a source or a binary package.
Did you update your packages?
On Thu, 20 Oct 2011, Burgette, Lane wrote:
Hi Everyone,
I'm having problems installing a package locally from source on my
Mac. It was developed on a Windows 7 machine (x86-64) and loads
without incident under Windows (both x86-32 and x86-64) and Linux.
When I try to install, it steps
You are taking the contents of a .Renviron file and putting it in
.Rprofile.
There is a whole section at the help page you quote about not
confusing the two
On Mon, 10 Oct 2011, Marius Hofert wrote:
Dear all,
I would like to use my own library for packages. It should go in
On Wed, 5 Oct 2011, Kasper Daniel Hansen wrote:
This has everything to do with your configuration. I don't know why R
does not do this out of the box when build with quartz support, but I
It does for me, using either the CRAN build or my own build.
See the code in
You can transfer installed packages without compiled code from one
platform to another.
For packages with compiled code, you will need to get the old versions
and compile from the sources. For CRAN old versions are available at
http://cran.r-project.org/src/contrib/Archive
Just what part of
On Thu, 11 Aug 2011, Simon Urbanek wrote:
On Aug 11, 2011, at 2:35 PM, Michael Hoban wrote:
Hi all-
I tried searching before posting, but this is one of those tricky
questions to search for. My issue is this: within the R.app gui, I can
use extended characters in plot labels without any
And note too that this is looking first for a script texi2dvi. If you
have that, *it* will look for pdflatex, possibly already knowing where
to look.
Also note that both the usual texi2dvi and tools::texi2dvi will
consult environment variables such as PDFLATEX.
If you have a standard Mac
On Tue, 5 Jul 2011, Federico Calboli wrote:
On 5 Jul 2011, at 16:26, Kasper Daniel Hansen wrote:
which texi2dvi
/usr/bin/texi2dvi
and
$:/usr/local/texlive/2010/bin/x86_64-darwin$ ls texi*
texindy
but no texi2dvi. I did ask other mactex users and they also do not have texi2dvi
Well, I
directly. And that this is all in the R-admin manual.
On Wed, 6 Jul 2011, Berend Hasselman wrote:
On 05-07-2011, at 17:39, Prof Brian Ripley wrote:
On Tue, 5 Jul 2011, Federico Calboli wrote:
On 5 Jul 2011, at 16:26, Kasper Daniel Hansen wrote:
which texi2dvi
/usr/bin/texi2dvi
and
$:/usr
It's really odd that people blog about their own inefficient scripts
rather than read the R documentation.
Because this scripts checks (very inefficiently) if a package is
already installed, it would not solve the problem discussed in this
thread. And install.packages() takes a vector of
On Sat, 21 May 2011, Simon Urbanek wrote:
Carlo,
On May 21, 2011, at 9:10 AM, Carlo Tambuatco wrote:
This question has probably been asked to death already, I don't know yet...but
when plotting using the Quartz framework on OS X, labels do not show up unless
the sans font family is
base
other attached packages:
[1] sp_0.9-81
loaded via a namespace (and not attached):
[1] grid_2.13.0 lattice_0.19-23 tools_2.13.0
On May 2, 2011, at 1:03 PM, António M. Rodrigues wrote:
No dia 2 de Maio de 2011 11:32, Prof Brian Ripley
rip...@stats.ox.ac.ukescreveu:
On Mon, 2 May
On Mon, 2 May 2011, António M. Rodrigues wrote:
Hi,
I'm trying to instal library rgdal in my macbook (os X 10.6.7).
I have installed the latest R package (R-2.13.0.pkg).
I have gdal 1.8 install. Also, I have loaded library sp which rgdal needs.
I downloaded rdgal_0.6-33.tgz and using R
Try running 32-bit R on your platform: it does contain cairo support.
(So does my own x86_64 build of 2.13.0: looks like there is/was a
problem on the CRAN build machine. So you could also build R from the
sources.)
On Wed, 13 Apr 2011, Sarah Berke wrote:
Hello,
I'm not sure if this is the
On Wed, 20 Apr 2011, jmmi mijle wrote:
Hi,
Is it possible run install.packages() using the stock R Mac binary in the
command line without it trying to load the tcl/tk interface to select a
mirror? I'd rather just use the text-based numerical selection for the
mirror and not have X11 start up
This is an example of 'embarrassingly parallel' computation. Simply
run each chain in a separate process in parallel. Packages such as
snow or multicore can organize that for you.
However, if you mean logistic regression (there are other binomial
regressions such as probit), first check how
On Wed, 2 Mar 2011, Andrew Bevan wrote:
Dear list
I am having problems installing rgeos from the R-forge site. It
seems to install okay for the 64-bit version of R but not for the
32-bit version for some reason. For the latter, I get the following
errors:
--
Missing labels has been reported several times, and AFAIK has always
indicated a corrupt font cache (or other problems in the font book).
There are various ways to repair that, so I'll leave you to Google for
one.
On Wed, 19 Jan 2011, Phillip Jardine wrote:
Tena,
I had the same problem
On Sat, 15 Jan 2011, Berend Hasselman wrote:
On 15-01-2011, at 07:39, Murray Jorgensen wrote:
Well, still no responses, but I'm further along the trail. I decided that I
must need that 'PACKAGES' file so I went back to CRAN and got it, and placed it
in my /Applications/tgz12.1/ folder.
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