Re: [R-SIG-Mac] Corrupt R installation

With RStudio I just quit, restart and then update the packages. Ken > On 11 Jun 2021, at 8:07 am, Simon Urbanek wrote: > > > Those errors come from packages that you didn't re-install - anything that > uses /usr/local is not from CRAN. So check > /Users/Misha/Library/R/4.0/library/ > Best

Re: [R-SIG-Mac] Corrupt R installation

Allright - I´m way beyond believing I could save my packages and ended up removing everything (including all versions in R.framework dir.) I reinstalled from CRAN. But there is still something out of the ordinary. After installing some of them : Some work, others (meaning most) display "Error:

Re: [R-SIG-Mac] Corrupt R installation

Yep. (In the first form, you likely want a stoplist for base and recommended packages.) You can also base it on a listing of the library directory. This has the advantage that you can fairly easily twiddle it to look at older versions after the upgrade. > .libPaths() [1]

Re: [R-SIG-Mac] Corrupt R installation

Um, this is actually a lot easier purely with R - if you want to keep track of your favorite packages it is as simple as pkgs = rownames(installed.packages()) writeLines(pkgs, "packages.txt") and oyu have a list of all packages that you can edit if desired. if you ever want to re-install

Re: [R-SIG-Mac] Corrupt R installation

Besides that Homebrew does not explain any chaos and does not do a fragile mess, he clearly stated that his installation is managed/controlled by his University, so the below isn't helpful. See my other response in this thread about how to automagically re-install packages after Homebrew

Re: [R-SIG-Mac] Corrupt R installation

On 08/06/2021 22:46, moleps islon wrote: [...] I have no idea why, but my R installation (Mac OS X - Big Sur) automatically updates causing havoc with my libraries each time. My Mac is under administration from the university and their software center, but they claim it is not their fault - but

Re: [R-SIG-Mac] Corrupt R installation

Also, symlinking an X.Y R version package library to any other major-minor version is never supported (even if it sometimes works). Re-install your packages when the minor version Y increments. On June 8, 2021 5:07:28 PM PDT, Simon Urbanek wrote: > >You seem to have entirely non-standard

Re: [R-SIG-Mac] Corrupt R installation

You seem to have entirely non-standard setup that you're on your own and I assume you're not using CRAN R since you involve homebrew (which explains the chaos) so presumably you re-compiled R yourself and all packages, but I'd like to point out that if all you are after is OpenMP support then

[R-SIG-Mac] Corrupt R installation

Copied from SO ( https://stackoverflow.com/questions/67892321/major-r-installation-corruption) and sent here instead at the suggestion of Dirk Eddelbuettel I have no idea why, but my R installation (Mac OS X - Big Sur) automatically