Re: [R-SIG-Mac] HELP

The dependence seems to come from rms -> multcomp -> mvtnorm. Keith > On Mar 20, 2018, at 11:44 AM, David Winsemius <dwinsem...@comcast.net> wrote: > > >> On Mar 20, 2018, at 8:35 AM, Keith O'Hara <keith.oh...@nyu.edu> wrote: >> >> Did you try r

Re: [R-SIG-Mac] HELP

Did you try reinstalling the mvtnorm package? Keith > On Mar 19, 2018, at 10:56 PM, Yonabeth Nava de Escalante > wrote: > > I am trying to install the ‘rms’ package in my Mac OS X Yosemite 10.10.5. > When I try to load the library I get this error: > >> library(rms) >

Re: [R-SIG-Mac] Problems with runtime linking of R-extension

Try adding '/usr/local/lib' to DYLD_LIBRARY_PATH and DYLD_FALLBACK_LIBRARY_PATH. If that doesn't fix the problem, try modifying the install name of libaf to include /usr/local/lib. Something like: sudo install_name_tool -id /usr/local/lib/libaf.dylib /usr/local/lib/libaf.dylib or sudo

Re: [R-SIG-Mac] Update of RcppParallel failed

:29 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote: > > On 14/02/2018 14:01, Keith O'Hara wrote: >> This looks like an issue to bring up with the Rcpp guys, not R… but can you >> provide a full printout of the error? I’m guessing this failed when &

Re: [R-SIG-Mac] Update of RcppParallel failed

This looks like an issue to bring up with the Rcpp guys, not R… but can you provide a full printout of the error? I’m guessing this failed when compiling a C file, not C++. > On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac > wrote: > > This morning I had an

Re: [R-SIG-Mac] rJava compilation on R 3.5 devel [SOLVED]

t;>>>> >>>>> /Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Libraries/libjvm.dylib >>>>> >>>>> /Library/Java/JavaVirtualMachines/jdk1.8.0_121.jdk/Contents/Home/jre/lib/server/libjvm.dylib >>>>> >>>>> /Librar

Re: [R-SIG-Mac] rJava compilation on R 3.5 devel [NOt completely SOLVED]

ts/Home/lib/server >>> >>> The path of DYLD_FALLBACK_LIBRARY_PATH is wrong. This folder does not exist. >>> >>> And in R as root >>>> Sys.getenv() >>> DYLD_FALLBACK_LIBRARY_PATH >>> /Library/Frameworks/R.framework/Resources/lib:/Libra

Re: [R-SIG-Mac] rJava compilation on R 3.5 devel [NOt completely SOLVED]

omp.dylib but libgomp.dylib and >> libiomp5.dylib. I don't know if I can use it instead of libomp.dylib. >> >> But I see one in: >> /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libomp.dylib >> >> Better to use this one: >> cd /usr/local/lib

Re: [R-SIG-Mac] rJava compilation on R 3.5 devel

Sorry, ignore the installation question, I missed the ‘brew install’ line. Try adding a symbolic link from the brew install of libomp to /usr/local/lib. > On Jan 31, 2018, at 5:38 AM, Keith O'Hara <keith.oh...@nyu.edu> wrote: > > Apple’s LLVM doesn’t support OpenMP, which expl

Re: [R-SIG-Mac] rJava compilation on R 3.5 devel

Apple’s LLVM doesn’t support OpenMP, which explains the second error. How did you install clang-5.0.1? If you installed using MacPorts, then you might need to create a symbolic link to libomp in /usr/local/lib. Check if the following exists: /opt/local/lib/libomp/libomp.dylib > On Jan 31,

Re: [R-SIG-Mac] R package

Can you check if the command line tools are installed by running: xcode-select --install in terminal. Keith > On Oct 26, 2016, at 5:28 PM, Kodalore Vijayan, Vineetha W > wrote: > > Hello, > > I removed gfortran 6.1 and installed gfortran v4.8.2. > > Now i have another

Re: [R-SIG-Mac] R package

The R binaries are built using gfortran v4.8.2; can you not build your package using that instead? Keith > On Oct 24, 2016, at 6:25 PM, Kodalore Vijayan, Vineetha W > wrote: > > Hello, > > I have an issue on Mac OS ElCapitan ( just now upgraded to sierra) with > Xcode 7 and