[R-sig-phylo] Displaying branch support after rooting

2011-05-21 Thread Brian Bourke
Dear All I am using ape to draw trees output from mrbayes and I am having problems with the way branch support values are being displayed on my trees. Support values change after rooting, and vary depending on the root. Below is an example of a tree, and the way in which branch support

Re: [R-sig-phylo] Displaying branch support after rooting

2011-05-21 Thread Emmanuel Paradis
Hi Brian, You are plotting a tree and adding the node labels from another tree. You'd better do something like: a - root(tree, plot(a, nodelabels(a$node.label, best, Emmanuel -Original Message- From: Brian Bourke brianbou...@hotmail.com Sender: